MC01g_new0157 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0157
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 5546355 .. 5547446 (-)
RNA-Seq ExpressionMC01g_new0157
SyntenyMC01g_new0157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGAGACCAAAATTATAATTTCAATTTTAACTTTTTAATTATAATTATTAATATAAAAACAATGGCTTTTCATAGACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATGTTAATTTTTTTTCCAATTAAATAAAGGATAATTAATTTAATTATTATTTTTTATTTCAGTCGATAATTTCGACGAAATGTGACAAATTCAGCTCCAGATCCCCATCACCGTGGCGCTCTCGCCATTTTTATCTAATCCTTCTACTTCTTCGCAATTCTTGATTCAAAATTCATTGTTCTAACAACGCAATTCAAGTTCTCACCGAACCACCTCGCCGAATCCGAGTGGATTTCGAAGTGAAGAAGAACCGGAAGCCGAGCAAATTCGTAGTCAATCCAGGAATTTGCAGTTCGATTTCAAATGCGAAACGCGAAAAGGTGAAGTGTTTGATGAGATATATGCGAGGACTGTACTGATCATATAAGAAATTGCTATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAACGAGAAACGGCCTCCAACAAAAGGATTCTGATAGCAGACAAGAGGAGCTGAGCAAATGCTTCCCGAGCACGAATTGCAGAGGCTCAGGAATGGGAGAGAGATTTTGTTATTAATTACACGTGTTTTTCTTTTCCTCAAATTTTCAAAAAGTACATGTACAAAAGTTGAGATTTAGAGGTTTTTCCCTTCAAATTTTGCTGCTCACGAGTGATAAAAAAACTTGATATCTCGATCAAGAACTAATACCATTACC

mRNA sequence

ATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAA

Coding sequence (CDS)

ATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAA

Protein sequence

MQVRNLLAMDLAVVENRMEKLTKLLMKFQWNYEEEINPVGLKVRRRGKHSISSGNDYSDPVDLPWKREPGRVFDPKIDQARNPRSSVPGTCNYSKRCGVMSTRD
Homology
[Close]
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022147610.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 1.15e-05
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 71
           E   ++L++F  + EEEINPV L V                S+SSGND SDPVDLPWKRE
Sbjct: 217 ESTDEILVEFSED-EEEINPVRLNVLPAIEERSASSENFVQSVSSGNDCSDPVDLPWKRE 276

[Close]
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022987603.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 49.7 bits (117), Expect = 3.52e-04
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S+SS ND + PVDLPWKRE
Sbjct: 206 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 265

[Close]
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022960925.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 49.7 bits (117), Expect = 3.52e-04
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S+SS ND + PVDLPWKRE
Sbjct: 208 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 267

[Close]
BLAST of MC01g_new0157 vs. NCBI nr
Match: KAG7023666.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.9 bits (115), Expect = 6.56e-04
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S++S ND + PVDLPWKRE
Sbjct: 207 ERIDEISLEFSED-EEEINPVDLNVLPITEKRSPSSKKFVRSVNSDNDSNGPVDLPWKRE 266

[Close]
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_023516378.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 48.9 bits (115), Expect = 6.57e-04
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S++S ND + PVDLPWKRE
Sbjct: 210 ERIDEISLEFSED-EEEINPVDLNVLPITEKRSPSSKKFVRSVNSDNDSNGPVDLPWKRE 269

[Close]
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1D0M1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016492 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.55e-06
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 71
           E   ++L++F  + EEEINPV L V                S+SSGND SDPVDLPWKRE
Sbjct: 217 ESTDEILVEFSED-EEEINPVRLNVLPAIEERSASSENFVQSVSSGNDCSDPVDLPWKRE 276

[Close]
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1JJX8 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485112 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.70e-04
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S+SS ND + PVDLPWKRE
Sbjct: 206 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 265

[Close]
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1HAH4 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461582 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.71e-04
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 19  EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78
           E++ ++ ++F  + EEEINPV L V           ++   S+SS ND + PVDLPWKRE
Sbjct: 208 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 267

The following BLAST results are available for this feature:
BLAST of MC01g_new0157 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g_new0157 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147610.11.15e-0549.21CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Momordica charan... [more]
XP_022987603.13.52e-0440.85CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita maxima... [more]
XP_022960925.13.52e-0440.85CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita moscha... [more]
KAG7023666.16.56e-0439.44CRM-domain containing factor CFM3, chloroplastic/mitochondrial, partial [Cucurbi... [more]
XP_023516378.16.57e-0439.44CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita pepo s... [more]
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D0M15.55e-0649.21CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Momordica char... [more]
A0A6J1JJX81.70e-0440.85CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita maxi... [more]
A0A6J1HAH41.71e-0440.85CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita mosc... [more]
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0157.1MC01g_new0157.1mRNA