MC01g_new0146 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0146
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 5138669 .. 5140025 (+)
RNA-Seq ExpressionMC01g_new0146
SyntenyMC01g_new0146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTCCCAGTCATGAGTGCACGTGTCTAGGAGTTGCTGTGTTAACCTTGGGGGGCGAACAGTTGATTTTCGATTGCACCACGGTCGAGCCGGATTTTCGCTTTCAAGGCAGTGGTTTTTTCACGGCACAGCATAATTTCAATTCATATTTTCTGATTTTTCCAACAAAAATTACAAGGAGATGCATACAAAGAACTGCAACAAAGGTTTTTCAAAGTCGTTACTACTGGCCCTCAGTATTCAAGGATGCCCACGCCTTTGTGAAGAGCTGTGATAGATGTCAACATATGGGATATATTTCCAATAAGTCGTAAATGCCTTTAAATTTCATCTTAGAAATTGGACTGTTCGATGTTTGGGGAATAGACTTTATGGGGCCTTCCCATCGTGCAATGGCAACTTATTCATTCTTCTAGCAGTAGACTATAGTAGAGGCCAAAACTTGTGCCACTAGTGATGCCAAGGTGGTTCTCAAATTTTTACACAAGAACATCTTTATGAGGTTTGGAACACCGAGAGTATTGATAAGTGATGAAGGATCTCACTTTGTTAACAGAGCTATGACTGTGTTGCGTTGCTTGAAGGGTATAGTTTTGCTCGTGGACAAGCAAGGTCTTCAGTTTTCGTAGTCTTATTTTGAGTTTATATGGTTATAATTGTGAGTGTGCTTTCCTTATATTACTTTAATGCATAATTAATAGGAGAAGTATGAAAAAGAATCCCTTTGTATACTTGTTTTGAAAGATTTGAAAGATTCGGCTTAGTACTTGCTTCTTTTGATCTCTCGTGCAGAAATTGTTGGAGCATCAGAAGCAGAGCAACAAAGATGGATAGATAAGGCCAGGACAACATCGAAAGTACGAAAAAATAGGGCAACGCAGTAACTTACTTTCATGTGGATTTTTACCAAATTTCCACACACCTGTTATCCGTTGCCCTAAAATTAGAAGATGGTCCAAAAGCAAGAAGAATCGCAGCTGACAACATCGATCTCAAAGAGAATTATTCGAAAAAGGACCAAAAAGAGAGGAGAGAACTTACCTTCAATAGCAGGAGACCTTCGAATTTCTACGAAGACTAGAGGAAGCTTTTAGTTCTTTGTTATTTTCGCAGAAATTGATTGTTCTCTTTTATTTTCTTTTATGTTTTCCTCAACCCTGGTGAGTTAAATTCCATTTTGGGGGAGGTTGTAAACTTTTGCTGTAAACAATAGTTGCTATAGCTCGATTTTGTAAGCTGTTAAGTATAGTTGTTAGTATTTCTTAACTCTTTGAATTTGTTGGTCATCATTTTTGGATTGCTTGCTCTTACATGATTTGGAAAAATATATGAGATGCCTGATTGGCTCTACTTGAT

mRNA sequence

ATGAGGTTTGGAACACCGAGAGTATTGATAAGTGATGAAGGATCTCACTTTGTTAACAGAGCTATGACTGTGTTGCGTTGCTTGAAGGGTATAGTTTTGCTCGTGGACAAGCAAGAAATTGTTGGAGCATCAGAAGCAGAGCAACAAAGATGGATAGATAAGGCCAGGACAACATCGAAAGTACGAAAAAATAGGGCAACGCAGTAA

Coding sequence (CDS)

ATGAGGTTTGGAACACCGAGAGTATTGATAAGTGATGAAGGATCTCACTTTGTTAACAGAGCTATGACTGTGTTGCGTTGCTTGAAGGGTATAGTTTTGCTCGTGGACAAGCAAGAAATTGTTGGAGCATCAGAAGCAGAGCAACAAAGATGGATAGATAAGGCCAGGACAACATCGAAAGTACGAAAAAATAGGGCAACGCAGTAA

Protein sequence

MRFGTPRVLISDEGSHFVNRAMTVLRCLKGIVLLVDKQEIVGASEAEQQRWIDKARTTSKVRKNRATQ
Homology
[Close]
BLAST of MC01g_new0146 vs. NCBI nr
Match: RDX78157.1 (hypothetical protein CR513_41613, partial [Mucuna pruriens])

HSP 1 Score: 44.3 bits (103), Expect = 8.16e-04
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 2  RFGTPRVLISDEGSHFVNRAMTVLRCLKGIV 32
          +FG P+VLISD+GSHF NRAM  L    G+V
Sbjct: 24 KFGVPKVLISDQGSHFYNRAMATLLKKYGVV 54

[Close]
BLAST of MC01g_new0146 vs. NCBI nr
Match: RDY11541.1 (Gag-Pol polyprotein, partial [Mucuna pruriens])

HSP 1 Score: 45.4 bits (106), Expect = 9.05e-04
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 2  RFGTPRVLISDEGSHFVNRAMTVLRCLKGIVLLV 35
          RFG  +VLISD+GSHF NRAM+ LR   G+V ++
Sbjct: 60 RFGVSKVLISDQGSHFYNRAMSSLRNKYGVVHII 93

[Close]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match: A0A371FIL7 (Integrase catalytic domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_41613 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 3.95e-04
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 2  RFGTPRVLISDEGSHFVNRAMTVLRCLKGIV 32
          +FG P+VLISD+GSHF NRAM  L    G+V
Sbjct: 24 KFGVPKVLISDQGSHFYNRAMATLLKKYGVV 54

[Close]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match: A0A371I922 (Gag-Pol polyprotein (Fragment) OS=Mucuna pruriens OX=157652 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.38e-04
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 2  RFGTPRVLISDEGSHFVNRAMTVLRCLKGIVLLV 35
          RFG  +VLISD+GSHF NRAM+ LR   G+V ++
Sbjct: 60 RFGVSKVLISDQGSHFYNRAMSSLRNKYGVVHII 93

[Close]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match: A0A371HDE5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_15932 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.07e-04
Identity = 19/40 (47.50%), Postives = 27/40 (67.50%), Query Frame = 0 

Query: 3  FGTPRVLISDEGSHFVNRAMTVLRCLKGIVLLVDKQEIVG 42
          FG P+ LI+D+GSHF NR+M +L    G++ L   + IVG
Sbjct: 28 FGVPKALINDQGSHFYNRSMAMLLEKYGMITLAHYKPIVG 67

[Close]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match: A0A371I4Q9 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_05573 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.46e-04
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0 

Query: 2   RFGTPRVLISDEGSHFVNRAMTVLRCLKGIVLLVDK------------QEIVGASEAEQQ 58
           RFG  +VLISD+GSHF NRAM +   LK I    +             + ++G S +  +
Sbjct: 67  RFGVSKVLISDQGSHFYNRAMAIY--LKNIEWCTESPLHITLKPVAKMKSLIGKSRSYYR 126

[Close]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match: A0A5A7VHS5 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00490 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.66e-04
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 2   RFGTPRVLISDEGSHFVNRAMTVL 25
           RFGTPR LISDEGSHF+NR M  L
Sbjct: 128 RFGTPRTLISDEGSHFINRIMAKL 151

The following BLAST results are available for this feature:
BLAST of MC01g_new0146 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g_new0146 vs. NCBI nr
Match NameE-valueIdentityDescription
RDX78157.18.16e-0461.29hypothetical protein CR513_41613, partial [Mucuna pruriens][more]
RDY11541.19.05e-0458.82Gag-Pol polyprotein, partial [Mucuna pruriens][more]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371FIL73.95e-0461.29Integrase catalytic domain-containing protein (Fragment) OS=Mucuna pruriens OX=1... [more]
A0A371I9224.38e-0458.82Gag-Pol polyprotein (Fragment) OS=Mucuna pruriens OX=157652 GN=gag-pol PE=4 SV=1[more]
A0A371HDE56.07e-0447.50Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_15932 P... [more]
A0A371I4Q96.46e-0437.68Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_05573 P... [more]
A0A5A7VHS57.66e-0479.17Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MC01g_new0146 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0146.1MC01g_new0146.1mRNA