MC01g0118 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0118
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L12
Location	MC01: 6207605 .. 6207754 (-)
RNA-Seq Expression	MC01g0118
Synteny	MC01g0118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCTCTCATCGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGGGATTTCGAAGGAAGAGGCGAAGGAGCTCATTGAAAGGTTA

mRNA sequence

AATCTCTCTCATCGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGGGATTTCGAAGGAAGAGGCGAAGGAGCTCATTGAAAGGTTA

Coding sequence (CDS)

AATCTCTCTCATCGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGGGATTTCGAAGGAAGAGGCGAAGGAGCTCATTGAAAGGTTA

Protein sequence

NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

Homology

[Close]

BLAST of MC01g0118 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3   SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 46
           S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Sbjct: 134 SSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 176

[Close]

BLAST of MC01g0118 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3   SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 46
           S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Sbjct: 130 SSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 172

[Close]

BLAST of MC01g0118 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-08
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL 51
           R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Sbjct: 131 RIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 176

[Close]

BLAST of MC01g0118 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-08
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL 51
           R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Sbjct: 131 RIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 176

[Close]

BLAST of MC01g0118 vs. ExPASy Swiss-Prot
Match: O22386 (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL12-2 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-07
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 3   SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL 51
           S R+A IK V ALT+LALKEAK+LIE LPKK +EG+SK+EA++  ++L
Sbjct: 128 SARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAEDAKKQL 175

[Close]

BLAST of MC01g0118 vs. NCBI nr
Match: KAG7632826.1 (Ribosomal protein L7/L12 C-terminal/adaptor protein ClpS-like, partial [Arabidopsis suecica])

HSP 1 Score: 60.5 bits (145), Expect = 1.09e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEA 43
          S R+AVIK V ALTSLALKEAKELIE LPKK++EG++K+EA
Sbjct: 9  SSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVTKDEA 49

[Close]

BLAST of MC01g0118 vs. NCBI nr
Match: TKY67758.1 (50S ribosomal protein L12-1 [Spatholobus suberectus])

HSP 1 Score: 63.5 bits (153), Expect = 1.28e-10
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIKTV ALTSLALKEAKELIE LPKK++EG+SKEEA++
Sbjct: 130 RIAVIKTVRALTSLALKEAKELIEGLPKKFKEGVSKEEAED 170

[Close]

BLAST of MC01g0118 vs. NCBI nr
Match: RXH89406.1 (hypothetical protein DVH24_031763 [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 1.89e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. NCBI nr
Match: XP_008341453.2 (50S ribosomal protein L12-1, chloroplastic [Malus domestica] >RXH69453.1 hypothetical protein DVH24_037237 [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 1.89e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. NCBI nr
Match: TQD98087.1 (hypothetical protein C1H46_016352 [Malus baccata])

HSP 1 Score: 63.2 bits (152), Expect = 1.89e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. ExPASy TrEMBL
Match: A0A498J2K9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031763 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.15e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. ExPASy TrEMBL
Match: A0A498HKH5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037237 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.15e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. ExPASy TrEMBL
Match: A0A5N5G8Z0 (50S ribosomal protein L12-1 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_018263 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.15e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. ExPASy TrEMBL
Match: A0A540MH53 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_016352 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.15e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. ExPASy TrEMBL
Match: A0A540MW00 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011338 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.15e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 5   RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 45
           R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Sbjct: 133 RIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEAEE 173

[Close]

BLAST of MC01g0118 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-10
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3   SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 46
           S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Sbjct: 130 SSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 172

[Close]

BLAST of MC01g0118 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-10
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3   SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 46
           S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Sbjct: 134 SSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 176

[Close]

BLAST of MC01g0118 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-07
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 4   HRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE 46
           +R+AVI  + A+TSL+L E+KELIE  PKK++EG++K+EA+E
Sbjct: 137 NRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEE 178

[Close]

BLAST of MC01g0118 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL 51
           N S ++ VIK V   TSL LKEAKEL+E +P   ++G++KEEA E+I ++
Sbjct: 127 NASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176

[Close]

BLAST of MC01g0118 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL 51
           N S ++ VIK V   TSL LKEAKEL+E +P   ++G++KEEA E+I ++
Sbjct: 127 NASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176

The following BLAST results are available for this feature:

BLAST of MC01g0118 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36210	2.9e-09	76.74	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	2.9e-09	76.74	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36688	2.4e-08	67.39	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	2.4e-08	67.39	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
O22386	2.7e-07	62.50	50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of MC01g0118 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7632826.1	1.09e-10	75.61	Ribosomal protein L7/L12 C-terminal/adaptor protein ClpS-like, partial [Arabidop...	[more]
TKY67758.1	1.28e-10	80.49	50S ribosomal protein L12-1 [Spatholobus suberectus]	[more]
RXH89406.1	1.89e-10	82.93	hypothetical protein DVH24_031763 [Malus domestica]	[more]
XP_008341453.2	1.89e-10	82.93	50S ribosomal protein L12-1, chloroplastic [Malus domestica] >RXH69453.1 hypothe...	[more]
TQD98087.1	1.89e-10	82.93	hypothetical protein C1H46_016352 [Malus baccata]	[more]

BLAST of MC01g0118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498J2K9	9.15e-11	82.93	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031763 PE=3 SV=1	[more]
A0A498HKH5	9.15e-11	82.93	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037237 PE=3 SV=1	[more]
A0A5N5G8Z0	9.15e-11	82.93	50S ribosomal protein L12-1 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=...	[more]
A0A540MH53	9.15e-11	82.93	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_016352 PE=3 SV=1	[more]
A0A540MW00	9.15e-11	82.93	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011338 PE=3 SV=1	[more]

BLAST of MC01g0118 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	2.0e-10	76.74	ribosomal protein L12-C	[more]
AT3G27830.1	2.0e-10	76.74	ribosomal protein L12-A	[more]
AT3G27840.1	2.8e-07	57.14	ribosomal protein L12-B	[more]
AT3G06040.1	1.1e-06	50.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	1.1e-06	50.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 2..50 e-value: 6.4E-13 score: 50.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 4..50
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 5..50 e-value: 1.1E-12 score: 48.1
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 4..46
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 4..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0118.1	MC01g0118.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000311	plastid large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome