MC00g_new0837 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0837
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold247: 23036 .. 24624 (+)
RNA-Seq ExpressionMC00g_new0837
SyntenyMC00g_new0837
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTTATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGGTACTTCTACCGCATCAAAAAGGTACCTTCGAGCTCAGCTTTGTCATCTAGCTCGGGCTGTTCAAAAAGAAAAAGAGGTTCCAACTAAGAAGAACCGAACCTGAAGGGGAGCCACATAAAAAGAGATTATAAACAAAATGTGAGCTGCAGTCGAACTCGTTGCAAGAAAAGGTAGTTGAATGTGTTAGGCGAAGAGAATATAGCACGTAGAAGCAACTAGAGTCGGCAGTTCGACGGCTTAATGCTTGCCAGAGATAGTTCTATAGCCCTTAGGATAAAGACATGAGCATAGGATTTCAGAGGAGCCCAAAGGCGGAGGTTTCACGATCCGATCTCTCACTTGAAGAAAGATAGCCTAGCTCTAGAAAAAGGATGCAATGATGAGAAAGTTCTTTTTTCATTGTAACGCTAAGGTGGACAAGACCTTACAACTAGAAAAAGGGGCAAAATCACAAGTTATCTTTAGAAAATTGGGATCTCCTTGATGATCCTCCTTTCATCACAGAGGGGCAGAAGATGAGTTGGGAGTTTCATCGAGATTACTATCACTCGTCCTAACCTCTCATATGTTGTGGGGATTGGTTGTCAATGTATGTTATGCTATCTCCGCAGAAGTTAAATTTGGATGAACTAAAAAAGATCCTCAGGTATATAAAGAAAGACCCACCCTAAAAAAAAGGCATTCTTTTATCGGTAAGCAAAAGGATCCTTGCTTCGGGCAACTTAGGGCCTATTCAGATGCAGCCCCTACCTCTTAAAGCTGAAGGAAGGTATTAATGCTGGCTTTCTCTCTGATAGAAAATCAACCATAGGCAAATTGATTCCCTGGAAAAGCAAAAAGAAAGGGGACTTCTTCTTCCCAGCCAGAAGCAAGCATAGCTTAGGCATAGGATTCCACATCCGTATCAGAAGTGCAAAAAAAAATTATTCGCACACCCCCCTGAATTAAAAAAAAAGAAGATGAGGCTTTTGCTATGCCACCAGAATTGTGTAGTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGGTCTGGATCTTGAATCGGATGATGAATTCTCTTCTGGAAAAGGAACTACAACCTATGCCCACTAAAACCCACCGCCCTTATACCGCGCCGTGCATATAGAAAGAAAGAATAGACTCTATTCCCCAAAAAAGGTTATACTAAGTTCAATTCCTTAGCTATTTCGTTTGGTCTTCTTTCCATTCCTCTAGAAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGTCGAAATGAAAGCAAGGCCTAATTGCTTGCTGCACTTCGCGCGCAGGAACGGATCTTAG

mRNA sequence

ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTTATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGGTACTTCTACCGCATCAAAAAGTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGAAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGTCGAAATGAAAGCAAGGCCTAATTGCTTGCTGCACTTCGCGCGCAGGAACGGATCTTAG

Coding sequence (CDS)

ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTTATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGGTACTTCTACCGCATCAAAAAGTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGAAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGTCGAAATGAAAGCAAGGCCTAATTGCTTGCTGCACTTCGCGCGCAGGAACGGATCTTAG

Protein sequence

MAVIQYEKASTHSSENIEMHVIIKVFIPESDWGDNSFKALTYIPRKTFPATEEKIARYFYRIKKLELSPYTGSAAQAHRRVLASKRGPNAPGTMAPKRVCGPATRPAKSNSKLEEEYDITKATVEMKARPNCLLHFARRNGS
Homology
[Close]
BLAST of MC00g_new0837 vs. NCBI nr
Match: XP_038904276.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120090630 [Benincasa hispida])

HSP 1 Score: 119 bits (299), Expect = 3.23e-28
Identity = 62/69 (89.86%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 1  MAVIQYEKASTHSSENIEMHVIIKVFIPESDWGDNSFKALTYIPRKTFPATEEKIARYFY 60
          M VIQYEKAS  SSENIEMHVIIKV IPESDWGDNSFKALTYIPRKTFPATEEKIARYFY
Sbjct: 1  MVVIQYEKASM-SSENIEMHVIIKVLIPESDWGDNSFKALTYIPRKTFPATEEKIARYFY 60

Query: 61 RIKKLELSP 69
          RIKK E  P
Sbjct: 61 RIKKGEGVP 68

[Close]
BLAST of MC00g_new0837 vs. NCBI nr
Match: XP_030925259.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC115952294 [Quercus lobata])

HSP 1 Score: 100 bits (250), Expect = 6.49e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 1  MAVIQYEKASTHSSENIEM-----HVIIKVFIPESDWGDNSFKALTYIPRKTFPATEEKI 60
          MAVIQYEK    + + I +     +VI KVFIPESDWGDNSFKALTYIPRKTFPATEEKI
Sbjct: 1  MAVIQYEKRPALTLQKISICRQGHNVITKVFIPESDWGDNSFKALTYIPRKTFPATEEKI 60

Query: 61 ARYFYRIKKLELSPYTGSAAQAHRRVLASKRGPN 89
          ARYF  IKK+  S    S++ + +R    KRG N
Sbjct: 61 ARYFDSIKKVPSSSALSSSSGSSKR----KRGSN 90

[Close]
BLAST of MC00g_new0837 vs. NCBI nr
Match: YP_009045714.1 (orf158 [Batis maritima] >AIC83317.1 orf158 [Batis maritima])

HSP 1 Score: 87.0 bits (214), Expect = 1.77e-18
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 1   MAVIQYEKASTHSSENIEM---HVIIKVFIPESDW--GDNSFKALTYIPRKTFPATEEKI 60
           MAVI    ASTHSS+NI     +VI KVF+PESDW   DNSFKALTYIPRKTFPATEEKI
Sbjct: 57  MAVIP---ASTHSSDNIYPQGHNVIRKVFLPESDWVGEDNSFKALTYIPRKTFPATEEKI 116

Query: 61  ARYFYRIKKLE----LSPYTGSAAQAHRRV 81
           AR F  IKK+     LS  +GS+ +  +RV
Sbjct: 117 ARCFDSIKKVPSSSALSSSSGSSKRKKKRV 143

[Close]
BLAST of MC00g_new0837 vs. NCBI nr
Match: KAF3452176.1 (hypothetical protein FNV43_RR08274 [Rhamnella rubrinervis])

HSP 1 Score: 83.6 bits (205), Expect = 7.92e-16
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1   MAVIQYEKASTHSSENIEMHVIIK-----VFIPESDWGDNSFKALTYIPRKTFPATEEKI 58
           MAVIQYEKASTHSS+NI +    +        PESDWGDNSFKALTYIPRKTFP TEEKI
Sbjct: 146 MAVIQYEKASTHSSDNIYLPSRPQCNNQGASPPESDWGDNSFKALTYIPRKTFPTTEEKI 205

[Close]
BLAST of MC00g_new0837 vs. NCBI nr
Match: KAF3439136.1 (hypothetical protein FNV43_RR17411 [Rhamnella rubrinervis])

HSP 1 Score: 68.2 bits (165), Expect = 3.56e-10
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 28 PESDWGDNSFKALTYIPRKTFPATEEKIARYFYRIKKLELS 68
          PESDWGDNSFKALTYIPRKTFP TEEKIA Y  R++++E S
Sbjct: 18 PESDWGDNSFKALTYIPRKTFPTTEEKIASYV-RVEEIENS 57

[Close]
BLAST of MC00g_new0837 vs. ExPASy TrEMBL
Match: A0A068BCZ4 (Orf158 OS=Batis maritima OX=4436 GN=orf158 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.55e-19
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 1   MAVIQYEKASTHSSENIEM---HVIIKVFIPESDW--GDNSFKALTYIPRKTFPATEEKI 60
           MAVI    ASTHSS+NI     +VI KVF+PESDW   DNSFKALTYIPRKTFPATEEKI
Sbjct: 57  MAVIP---ASTHSSDNIYPQGHNVIRKVFLPESDWVGEDNSFKALTYIPRKTFPATEEKI 116

Query: 61  ARYFYRIKKLE----LSPYTGSAAQAHRRV 81
           AR F  IKK+     LS  +GS+ +  +RV
Sbjct: 117 ARCFDSIKKVPSSSALSSSSGSSKRKKKRV 143

[Close]
BLAST of MC00g_new0837 vs. ExPASy TrEMBL
Match: A0A1R3KV79 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04092 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.05e-04
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 99  VCGPATRPAKSNSKLEEEYDITK 121
           VCGPATRPAKS+SKLEEEYD+TK
Sbjct: 11  VCGPATRPAKSHSKLEEEYDLTK 33

The following BLAST results are available for this feature:
BLAST of MC00g_new0837 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0837 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904276.13.23e-2889.86LOW QUALITY PROTEIN: uncharacterized protein LOC120090630 [Benincasa hispida][more]
XP_030925259.16.49e-2260.64LOW QUALITY PROTEIN: uncharacterized protein LOC115952294 [Quercus lobata][more]
YP_009045714.11.77e-1862.22orf158 [Batis maritima] >AIC83317.1 orf158 [Batis maritima][more]
KAF3452176.17.92e-1669.84hypothetical protein FNV43_RR08274 [Rhamnella rubrinervis][more]
KAF3439136.13.56e-1078.05hypothetical protein FNV43_RR17411 [Rhamnella rubrinervis][more]
BLAST of MC00g_new0837 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A068BCZ48.55e-1962.22Orf158 OS=Batis maritima OX=4436 GN=orf158 PE=4 SV=1[more]
A0A1R3KV791.05e-0491.30Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_04092 PE=4 SV=1[more]
BLAST of MC00g_new0837 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0837.1MC00g_new0837.1mRNA