MC00g0343 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0343
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein SDE2 homolog
Location	scaffold7: 28986 .. 29811 (-)
RNA-Seq Expression	MC00g0343
Synteny	MC00g0343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGATGAGGACAACACTGATAATGAAGAGGAAAGCGAGAAATCAGTCATCTTGAACAGTGGTTGTCAATCTGATTTGAAGGACACCGAAGGGAGCTCAGACTCTGTTAGCTGTGGTAAACAAGGCGATGTTTCTGGTGAAGCCTCGTGCGAAAGCCGTTTCGAGGAAGAAAAGGACATGGCAATGCAGGAAAGCATGGCATTAGTTGGATGCTCCAGTGAAAAAGCTCCTCATTCTGAATGGATTGATGTGGTTGAAATGAACAACCATACTACTCAGGGTGCAGATGTACCTTTTGCAAAGGCTGTTGTTGTTTCTGTCGATCAAGAAATCGAGGCTGTAAAACAGGATGCTGACAAGGTTGCGATTGTAAACTCAGAAAGCCGTCAAGACACGTCAGGTCCAAATAATGGTGAAACTATTGAAGATTTATCCACACTTCTTGAACCAAATGGCTCTCCAGTGTCCAAGTTGAGTGCTCCCAAAGAAACAGCTGCAAGTAGATGCAATTCAGAAGAAGCAACACTGAATTTTGATGATTTTAGTTCTGCAGCAGAAATGGAGGTATGTATGCTCAACAAGTCCAATTATAATTTTCCCATACCCCCAACGGTTTTAACGTCTTTGTAGCATTATAGTTCTCATAATAAAATAGTAAAAATTTTGGCTTAATTATCAACAGGTTCTTGGATTGGAAAGGCTAAAGAGTGAACTGCAAGCAAGAGGGTTAAAATGTGGAGGGACCTTGCAAGAGAGGGCAGCCAAGTTTTCCTTTCTCAAGTCTACCCCTTTAGACAAGCTTCCAAAGAAGCTTCTTGCCGCAAAG

mRNA sequence

TCGGATGAGGACAACACTGATAATGAAGAGGAAAGCGAGAAATCAGTCATCTTGAACAGTGGTTGTCAATCTGATTTGAAGGACACCGAAGGGAGCTCAGACTCTGTTAGCTGTGGTAAACAAGGCGATGTTTCTGGTGAAGCCTCGTGCGAAAGCCGTTTCGAGGAAGAAAAGGACATGGCAATGCAGGAAAGCATGGCATTAGTTGGATGCTCCAGTGAAAAAGCTCCTCATTCTGAATGGATTGATGTGGTTGAAATGAACAACCATACTACTCAGGGTGCAGATGTACCTTTTGCAAAGGCTGTTGTTGTTTCTGTCGATCAAGAAATCGAGGCTGTAAAACAGGATGCTGACAAGGTTGCGATTGTAAACTCAGAAAGCCGTCAAGACACGTCAGGTCCAAATAATGGTGAAACTATTGAAGATTTATCCACACTTCTTGAACCAAATGGCTCTCCAGTGTCCAAGTTGAGTGCTCCCAAAGAAACAGCTGCAAGTAGATGCAATTCAGAAGAAGCAACACTGAATTTTGATGATTTTAGTTCTGCAGCAGAAATGGAGGTTCTTGGATTGGAAAGGCTAAAGAGTGAACTGCAAGCAAGAGGGTTAAAATGTGGAGGGACCTTGCAAGAGAGGGCAGCCAAGTTTTCCTTTCTCAAGTCTACCCCTTTAGACAAGCTTCCAAAGAAGCTTCTTGCCGCAAAG

Coding sequence (CDS)

TCGGATGAGGACAACACTGATAATGAAGAGGAAAGCGAGAAATCAGTCATCTTGAACAGTGGTTGTCAATCTGATTTGAAGGACACCGAAGGGAGCTCAGACTCTGTTAGCTGTGGTAAACAAGGCGATGTTTCTGGTGAAGCCTCGTGCGAAAGCCGTTTCGAGGAAGAAAAGGACATGGCAATGCAGGAAAGCATGGCATTAGTTGGATGCTCCAGTGAAAAAGCTCCTCATTCTGAATGGATTGATGTGGTTGAAATGAACAACCATACTACTCAGGGTGCAGATGTACCTTTTGCAAAGGCTGTTGTTGTTTCTGTCGATCAAGAAATCGAGGCTGTAAAACAGGATGCTGACAAGGTTGCGATTGTAAACTCAGAAAGCCGTCAAGACACGTCAGGTCCAAATAATGGTGAAACTATTGAAGATTTATCCACACTTCTTGAACCAAATGGCTCTCCAGTGTCCAAGTTGAGTGCTCCCAAAGAAACAGCTGCAAGTAGATGCAATTCAGAAGAAGCAACACTGAATTTTGATGATTTTAGTTCTGCAGCAGAAATGGAGGTTCTTGGATTGGAAAGGCTAAAGAGTGAACTGCAAGCAAGAGGGTTAAAATGTGGAGGGACCTTGCAAGAGAGGGCAGCCAAGTTTTCCTTTCTCAAGTCTACCCCTTTAGACAAGCTTCCAAAGAAGCTTCTTGCCGCAAAG

Protein sequence

SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDMAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADKVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK

Homology

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BLAST of MC00g0343 vs. ExPASy Swiss-Prot
Match: Q7T293 (Replication stress response regulator SDE2 OS=Danio rerio OX=7955 GN=sde2 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 53/187 (28.34%), Postives = 87/187 (46.52%), Query Frame = 0


Query: 48  ASCESRFEEEKDMAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSV 107
           +S  S     + +  +E+  +   SS  AP    ++  EM       A +  + +     
Sbjct: 284 SSSSSPAANNEKLNQEETNEISSSSSSPAPKPTEVNQQEMETEMECTAQISSSSS--SPA 343

Query: 108 DQEIEAVKQDADKVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAAS 167
           +   E V+Q A++V  +  E +         +T E++    E + + +S  S+  E  + 
Sbjct: 344 EHSEEEVQQTAERVEKMAEEVQ---------KTAEEVQKKTEESTAEISPSSSIPEEKSQ 403

Query: 168 RCNSEEATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDK 227
             +  E  L+    S   ++E LGLERLK EL  RG+KCGGTLQERAA+   +K    D+
Sbjct: 404 VLSQVEDPLDLLSVSGPEQLEALGLERLKKELMERGMKCGGTLQERAARLFSVKGLTPDQ 459

Query: 228 LPKKLLA 235
           +   LLA
Sbjct: 464 IDPSLLA 459

[Close]

BLAST of MC00g0343 vs. ExPASy Swiss-Prot
Match: Q8K1J5 (Replication stress response regulator SDE2 OS=Mus musculus OX=10090 GN=Sde2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 181 FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLA 235
           FSSAAE+E LGLERLK EL   GLKCGGTLQERAA+   ++    + +   L A
Sbjct: 387 FSSAAELESLGLERLKCELMVLGLKCGGTLQERAARLFSVRGLTKELIDPALFA 440

[Close]

BLAST of MC00g0343 vs. ExPASy Swiss-Prot
Match: Q5RET9 (Replication stress response regulator SDE2 OS=Pongo abelii OX=9601 GN=SDE2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 130 QDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDDFSSAAEMEV 189
           ++T    +GE + +++   E     V+KL   +E+       ++ T++   F+S AE+E+
Sbjct: 343 KETEERTDGERVAEVA-CEERENVAVAKL---QESQPGNAVIDKETIDLLAFTSVAELEL 402

Query: 190 LGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLA 235
           LGLE+LK EL A GLKCGGTLQERAA+   ++    +++   L A
Sbjct: 403 LGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFA 443

[Close]

BLAST of MC00g0343 vs. ExPASy Swiss-Prot
Match: Q6IQ49 (Replication stress response regulator SDE2 OS=Homo sapiens OX=9606 GN=SDE2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 130 QDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDDFSSAAEMEV 189
           ++T    +GE + +++   E     V+KL   +E+       ++ T++   F+S AE+E+
Sbjct: 343 KETEERTDGERVAEVAP-EERENVAVAKL---QESQPGNAVIDKETIDLLAFTSVAELEL 402

Query: 190 LGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLA 235
           LGLE+LK EL A GLKCGGTLQERAA+   ++    +++   L A
Sbjct: 403 LGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFA 443

[Close]

BLAST of MC00g0343 vs. ExPASy Swiss-Prot
Match: Q12874 (Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.7e-07
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 161 PKETAASRCNSEEATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFL 220
           PKET+++  ++  A L+   FSS  E+  LGL+RLKS L A GLKCGGTL+ERA +    
Sbjct: 230 PKETSSALTHA-GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFST 289

Query: 221 KSTPLDKLPKKLLA 235
           K   L+ L   L A
Sbjct: 290 KGKSLESLDTSLFA 302

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BLAST of MC00g0343 vs. NCBI nr
Match: XP_022156565.1 (protein SDE2 homolog [Momordica charantia])

HSP 1 Score: 442 bits (1136), Expect = 9.66e-156
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 60
           SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM
Sbjct: 10  SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 69

Query: 61  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 120
           AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK
Sbjct: 70  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 129

Query: 121 VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD 180
           VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD
Sbjct: 130 VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD 189

Query: 181 FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK
Sbjct: 190 FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 245

[Close]

BLAST of MC00g0343 vs. NCBI nr
Match: XP_022154619.1 (protein SDE2 homolog [Momordica charantia])

HSP 1 Score: 390 bits (1003), Expect = 3.18e-132
Identity = 213/237 (89.87%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDL-KDTEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDEDNTDNEEES+KSVILNSGC+ DL KDTEGSSDSVSCGKQGDVSGEASCES  EEEKD
Sbjct: 228 SDEDNTDNEEESKKSVILNSGCKPDLNKDTEGSSDSVSCGKQGDVSGEASCESGSEEEKD 287

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA+QE MALVGCSSEKAPHSE IDVVEMNNHTTQGADVP A+AV +S DQEIEAVKQDAD
Sbjct: 288 MAIQEIMALVGCSSEKAPHSERIDVVEMNNHTTQGADVPCAEAVAISADQEIEAVKQDAD 347

Query: 121 KVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFD 180
           +VAIVNSE+RQDTSGPNNGETIEDLSTL EPNGSPVSKLSAPKETAASRCNSEEATLNFD
Sbjct: 348 EVAIVNSENRQDTSGPNNGETIEDLSTLPEPNGSPVSKLSAPKETAASRCNSEEATLNFD 407

Query: 181 DFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           DFSSAAEMEV+GLERLKSELQARGLKCGGTLQERAA+   LKSTPLD LPKKLLA K
Sbjct: 408 DFSSAAEMEVVGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDNLPKKLLARK 464

[Close]

BLAST of MC00g0343 vs. NCBI nr
Match: XP_022156550.1 (protein SDE2 homolog [Momordica charantia])

HSP 1 Score: 279 bits (714), Expect = 5.11e-89
Identity = 171/237 (72.15%), Postives = 178/237 (75.11%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKD-TEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDED+ DNEEESEKSVILNSGCQ DL + TEGSSDSVSCGKQGDVSG ASCES  EEEKD
Sbjct: 229 SDEDDIDNEEESEKSVILNSGCQPDLNNGTEGSSDSVSCGKQGDVSGGASCESGSEEEKD 288

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA                                  DVP A+AV VS DQEIEAVKQDAD
Sbjct: 289 MA----------------------------------DVPCAEAVAVSADQEIEAVKQDAD 348

Query: 121 KVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFD 180
           +VAIVNSE+RQDTSGPN GETIEDLS     NGSPVSKL   KETAASRCNSEEATLNFD
Sbjct: 349 EVAIVNSENRQDTSGPNIGETIEDLS-----NGSPVSKLIDTKETAASRCNSEEATLNFD 408

Query: 181 DFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           DFSSAAEMEV+GLERLK ELQARGLKCGGTLQERAA+   LKSTPLD LPKKLLA K
Sbjct: 409 DFSSAAEMEVVGLERLKRELQARGLKCGGTLQERAARLFLLKSTPLDNLPKKLLARK 426

[Close]

BLAST of MC00g0343 vs. NCBI nr
Match: XP_038875299.1 (replication stress response regulator SDE2 [Benincasa hispida])

HSP 1 Score: 275 bits (704), Expect = 5.77e-87
Identity = 167/240 (69.58%), Postives = 188/240 (78.33%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 60
           SDED+T+NEE SEKSVILN G QSDLKDTEGSSDSV+ GK G+ SG +SCES  EEEKD+
Sbjct: 233 SDEDDTENEEGSEKSVILNVG-QSDLKDTEGSSDSVNFGKSGNGSGGSSCESGSEEEKDV 292

Query: 61  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 120
           A++E+M LVG SSEKA  SE +D+VEMN+ TTQ A VP ++ V  S  QE E VKQDA +
Sbjct: 293 AVRETMELVGSSSEKALQSEEVDMVEMNDQTTQSAVVPCSEGVAGSAHQEDEVVKQDARE 352

Query: 121 VAIVNSES----RQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATL 180
           V I NSE+     QD S PNNGE IEDLST  EPNG PVSKL   ++T A+  +S EA L
Sbjct: 353 VEIANSENVSANHQDISDPNNGEIIEDLSTRPEPNGPPVSKLCDHEDTTAT-ASSSEAPL 412

Query: 181 NFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           NFDDFSSAAEMEVLGLERLKSELQ RGLKCGGTLQERAA+   LKSTPLDKLPKKLLA K
Sbjct: 413 NFDDFSSAAEMEVLGLERLKSELQVRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLARK 470

[Close]

BLAST of MC00g0343 vs. NCBI nr
Match: XP_004140590.1 (replication stress response regulator SDE2 [Cucumis sativus] >KGN46346.1 hypothetical protein Csa_005291 [Cucumis sativus])

HSP 1 Score: 271 bits (694), Expect = 1.69e-85
Identity = 169/241 (70.12%), Postives = 185/241 (76.76%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDL-KDTEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDED+ +NEEESEKSVILN G +SDL KD EGSSDSV+ GK GD SG +SCES  EEEKD
Sbjct: 229 SDEDDAENEEESEKSVILNVG-RSDLNKDAEGSSDSVNYGKAGDGSGGSSCESGSEEEKD 288

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA QE+M LVG SSEK   SE +D VEMN+ TTQ A +   +AV +S  QE E VKQDA 
Sbjct: 289 MAAQETMELVGSSSEKTLQSERVDAVEMNDQTTQSAVLSCPEAVAISAHQEDEVVKQDAL 348

Query: 121 KVAIVNSES----RQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEAT 180
           +V IVNSE+     QDTS PN+GE IEDLST  EPNGSPVSKLS   ET A+  N  E  
Sbjct: 349 EVEIVNSENVSANHQDTSNPNSGEIIEDLSTRPEPNGSPVSKLSDHDETTATVSN-PEIP 408

Query: 181 LNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAA 236
           LNFDDFSSA EMEVLGLERLKSELQARGLKCGGTLQERAA+   LKSTPLDKLPKKLLA 
Sbjct: 409 LNFDDFSSATEMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAR 467

[Close]

BLAST of MC00g0343 vs. ExPASy TrEMBL
Match: A0A6J1DQN2 (protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111023440 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 4.68e-156
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 60
           SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM
Sbjct: 10  SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 69

Query: 61  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 120
           AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK
Sbjct: 70  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 129

Query: 121 VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD 180
           VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD
Sbjct: 130 VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFDD 189

Query: 181 FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK
Sbjct: 190 FSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 245

[Close]

BLAST of MC00g0343 vs. ExPASy TrEMBL
Match: A0A6J1DMN6 (protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111021840 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 1.54e-132
Identity = 213/237 (89.87%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDL-KDTEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDEDNTDNEEES+KSVILNSGC+ DL KDTEGSSDSVSCGKQGDVSGEASCES  EEEKD
Sbjct: 228 SDEDNTDNEEESKKSVILNSGCKPDLNKDTEGSSDSVSCGKQGDVSGEASCESGSEEEKD 287

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA+QE MALVGCSSEKAPHSE IDVVEMNNHTTQGADVP A+AV +S DQEIEAVKQDAD
Sbjct: 288 MAIQEIMALVGCSSEKAPHSERIDVVEMNNHTTQGADVPCAEAVAISADQEIEAVKQDAD 347

Query: 121 KVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFD 180
           +VAIVNSE+RQDTSGPNNGETIEDLSTL EPNGSPVSKLSAPKETAASRCNSEEATLNFD
Sbjct: 348 EVAIVNSENRQDTSGPNNGETIEDLSTLPEPNGSPVSKLSAPKETAASRCNSEEATLNFD 407

Query: 181 DFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           DFSSAAEMEV+GLERLKSELQARGLKCGGTLQERAA+   LKSTPLD LPKKLLA K
Sbjct: 408 DFSSAAEMEVVGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDNLPKKLLARK 464

[Close]

BLAST of MC00g0343 vs. ExPASy TrEMBL
Match: A0A6J1DQL5 (protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111023428 PE=3 SV=1)

HSP 1 Score: 279 bits (714), Expect = 2.47e-89
Identity = 171/237 (72.15%), Postives = 178/237 (75.11%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKD-TEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDED+ DNEEESEKSVILNSGCQ DL + TEGSSDSVSCGKQGDVSG ASCES  EEEKD
Sbjct: 229 SDEDDIDNEEESEKSVILNSGCQPDLNNGTEGSSDSVSCGKQGDVSGGASCESGSEEEKD 288

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA                                  DVP A+AV VS DQEIEAVKQDAD
Sbjct: 289 MA----------------------------------DVPCAEAVAVSADQEIEAVKQDAD 348

Query: 121 KVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEATLNFD 180
           +VAIVNSE+RQDTSGPN GETIEDLS     NGSPVSKL   KETAASRCNSEEATLNFD
Sbjct: 349 EVAIVNSENRQDTSGPNIGETIEDLS-----NGSPVSKLIDTKETAASRCNSEEATLNFD 408

Query: 181 DFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 236
           DFSSAAEMEV+GLERLK ELQARGLKCGGTLQERAA+   LKSTPLD LPKKLLA K
Sbjct: 409 DFSSAAEMEVVGLERLKRELQARGLKCGGTLQERAARLFLLKSTPLDNLPKKLLARK 426

[Close]

BLAST of MC00g0343 vs. ExPASy TrEMBL
Match: A0A0A0KEZ6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087750 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.19e-86
Identity = 169/241 (70.12%), Postives = 185/241 (76.76%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDL-KDTEGSSDSVSCGKQGDVSGEASCESRFEEEKD 60
           SDED+ +NEEESEKSVILN G +SDL KD EGSSDSV+ GK GD SG +SCES  EEEKD
Sbjct: 229 SDEDDAENEEESEKSVILNVG-RSDLNKDAEGSSDSVNYGKAGDGSGGSSCESGSEEEKD 288

Query: 61  MAMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDAD 120
           MA QE+M LVG SSEK   SE +D VEMN+ TTQ A +   +AV +S  QE E VKQDA 
Sbjct: 289 MAAQETMELVGSSSEKTLQSERVDAVEMNDQTTQSAVLSCPEAVAISAHQEDEVVKQDAL 348

Query: 121 KVAIVNSES----RQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSEEAT 180
           +V IVNSE+     QDTS PN+GE IEDLST  EPNGSPVSKLS   ET A+  N  E  
Sbjct: 349 EVEIVNSENVSANHQDTSNPNSGEIIEDLSTRPEPNGSPVSKLSDHDETTATVSN-PEIP 408

Query: 181 LNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAA 236
           LNFDDFSSA EMEVLGLERLKSELQARGLKCGGTLQERAA+   LKSTPLDKLPKKLLA 
Sbjct: 409 LNFDDFSSATEMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAR 467

[Close]

BLAST of MC00g0343 vs. ExPASy TrEMBL
Match: A0A6J1H6Y8 (protein SDE2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461065 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 1.57e-83
Identity = 167/244 (68.44%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 2   DEDNTDNEEESEKSVILNSGCQSDL-KDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 61
           D D++D+EEE+EKSVILN GCQSDL KD EGSSDSV+ GK G  SGEAS ES  EEEK++
Sbjct: 240 DSDDSDSEEENEKSVILNDGCQSDLNKDAEGSSDSVNFGKHGYGSGEASSESGSEEEKNV 299

Query: 62  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPF----AKAVVVSVDQEIEAVKQ 121
           A+QE+M LVG SSEKA  SE  + VE+NN TTQGA V      A+AV VS DQE E  +Q
Sbjct: 300 AVQETMELVGSSSEKALCSEQFNEVEINNQTTQGAVVRCSEAEAEAVAVSTDQEDEVGEQ 359

Query: 122 DADKVAIVNSE----SRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAASRCNSE 181
            A  V I N E    + QD S PNNGET+EDLS+L EPNGSPV+KLS  +ET+AS+ NSE
Sbjct: 360 GAHGVDITNIEDVAANPQDISVPNNGETVEDLSSLPEPNGSPVTKLSDHEETSASKINSE 419

Query: 182 EATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKL 236
            A LNF+DFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAA+   LKSTPLDK+PKKL
Sbjct: 420 -APLNFEDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKVPKKL 479

[Close]

BLAST of MC00g0343 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-27
Identity = 96/238 (40.34%), Postives = 131/238 (55.04%), Query Frame = 0


Query: 1   SDEDNTDNEEESEKSVILNSGCQSDLKDTEGSSDSVSCGKQGDVSGEASCESRFEEEKDM 60
           SD D++D+EE+ EKSV+LN+G                 G  GD SG++SC S  EEE D 
Sbjct: 217 SDSDDSDDEED-EKSVVLNNG-----------------GHDGDSSGKSSCNSGSEEENDA 276

Query: 61  AMQESMALVGCSSEKAPHSEWIDVVEMNNHTTQGADVPFAKAVVVSVDQEIEAVKQDADK 120
            M  S  +V    E+    + I   EMN       D+P + AV      +   V  + D+
Sbjct: 277 VMHRSFDVV---KEEITGVQGIIEEEMN-------DLPVSVAV-----DDANTVADEMDQ 336

Query: 121 VAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAA--SRCNSEEATLNF 180
           +       + + S  + G+ + D++       + V +    KET +  + C      LNF
Sbjct: 337 L------EKVEKSSGDAGKNLVDVACETLITSAAVKREGTAKETVSVDAVCCKPVEPLNF 396

Query: 181 DDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPKKLLAAK 237
           DDF+S A+MEVLG+ERLK+ELQ+RGLKCGGTL+ERAA+   LKSTPLDKLPKKLLA K
Sbjct: 397 DDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAKK 415

[Close]

BLAST of MC00g0343 vs. TAIR 10
Match: AT3G06455.1 (ubiquitin family protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-18
Identity = 58/130 (44.62%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 107 VDQEIEAVKQDADKVAIVNSESRQDTSGPNNGETIEDLSTLLEPNGSPVSKLSAPKETAA 166
           V Q  + VK +   V  +N E   D +  +  + +E +      +   V +    KE   
Sbjct: 219 VHQSSDVVKGEITVVQRINEEKMDDFAVADAMDQLEKVEKSSGNDDFVVKRGGTAKERV- 278

Query: 167 SRCNSEEATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLD 226
             C      LNF +F +A +MEVLG+ERLK+ELQ+RGLKC GTL+ERAA+   LKSTPLD
Sbjct: 279 --CCKPVEPLNFAEFKAATDMEVLGMERLKTELQSRGLKCRGTLRERAARLFLLKSTPLD 338

Query: 227 KLPKKLLAAK 237
           KLPKKLLA K
Sbjct: 339 KLPKKLLAKK 345

[Close]

BLAST of MC00g0343 vs. TAIR 10
Match: AT5G06160.1 (splicing factor-related )

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 171 SEEATLNFDDFSSAAEMEVLGLERLKSELQARGLKCGGTLQERAAKFSFLKSTPLDKLPK 230
           S+   ++ D +S+  E+  +G E+LK  L A GLK GGT Q+RA +    K TPL+KL K
Sbjct: 235 SQHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDK 294

Query: 231 KLLA 235
           K  A
Sbjct: 295 KHFA 298

The following BLAST results are available for this feature:

BLAST of MC00g0343 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7T293	1.4e-08	28.34	Replication stress response regulator SDE2 OS=Danio rerio OX=7955 GN=sde2 PE=2 S...	[more]
Q8K1J5	2.0e-07	57.41	Replication stress response regulator SDE2 OS=Mus musculus OX=10090 GN=Sde2 PE=1...	[more]
Q5RET9	3.3e-07	36.19	Replication stress response regulator SDE2 OS=Pongo abelii OX=9601 GN=SDE2 PE=2 ...	[more]
Q6IQ49	4.4e-07	36.19	Replication stress response regulator SDE2 OS=Homo sapiens OX=9606 GN=SDE2 PE=1 ...	[more]
Q12874	9.7e-07	47.30	Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1	[more]

BLAST of MC00g0343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156565.1	9.66e-156	100.00	protein SDE2 homolog [Momordica charantia]	[more]
XP_022154619.1	3.18e-132	89.87	protein SDE2 homolog [Momordica charantia]	[more]
XP_022156550.1	5.11e-89	72.15	protein SDE2 homolog [Momordica charantia]	[more]
XP_038875299.1	5.77e-87	69.58	replication stress response regulator SDE2 [Benincasa hispida]	[more]
XP_004140590.1	1.69e-85	70.12	replication stress response regulator SDE2 [Cucumis sativus] >KGN46346.1 hypothe...	[more]

BLAST of MC00g0343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQN2	4.68e-156	100.00	protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111023440 PE=4 SV=1	[more]
A0A6J1DMN6	1.54e-132	89.87	protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111021840 PE=3 SV=1	[more]
A0A6J1DQL5	2.47e-89	72.15	protein SDE2 homolog OS=Momordica charantia OX=3673 GN=LOC111023428 PE=3 SV=1	[more]
A0A0A0KEZ6	8.19e-86	70.12	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087...	[more]
A0A6J1H6Y8	1.57e-83	68.44	protein SDE2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461065 PE=3 SV=1	[more]

BLAST of MC00g0343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01000.1	1.3e-27	40.34	Ubiquitin-like superfamily protein	[more]
AT3G06455.1	5.7e-18	44.62	ubiquitin family protein	[more]
AT5G06160.1	1.7e-06	43.75	splicing factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 176..234 e-value: 6.3E-23 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR12786:SF1	REPLICATION STRESS RESPONSE REGULATOR SDE2	coord: 2..235
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 2..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0343.1	MC00g0343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
cellular_component	GO:0005634	nucleus