MC00g0202 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0202
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein LHCP TRANSLOCATION DEFECT
Location	scaffold18: 1084426 .. 1084566 (-)
RNA-Seq Expression	MC00g0202
Synteny	MC00g0202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAACTACATGGGAATGCTAGCTGTGGAAGGGACATATGAAGAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGTACAGTTTTCTGACAAACCAAAACTTGAAAGAACTATTGAGAGCTGGAGCTAATTCTGAT

mRNA sequence

TTTAACTACATGGGAATGCTAGCTGTGGAAGGGACATATGAAGAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGTACAGTTTTCTGACAAACCAAAACTTGAAAGAACTATTGAGAGCTGGAGCTAATTCTGAT

Coding sequence (CDS)

TTTAACTACATGGGAATGCTAGCTGTGGAAGGGACATATGAAGAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGTACAGTTTTCTGACAAACCAAAACTTGAAAGAACTATTGAGAGCTGGAGCTAATTCTGAT

Protein sequence

FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLTNQNLKELLRAGANSD

Homology

[Close]

BLAST of MC00g0202 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.3e-10
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFL-------TNQNLKELLRAGANSD 48
           FNYMGMLAVEGTY++MEALL+QDIHPV   L           L+ELLRAGA  D
Sbjct: 89  FNYMGMLAVEGTYDKMEALLNQDIHPVDILLMLAASEGDKPKLEELLRAGAKYD 142

[Close]

BLAST of MC00g0202 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.3e-10
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFL-------TNQNLKELLRAGANSD 48
           FNYMGMLAVEGTY++MEALL+QDIHPV   L           L+ELLRAGA  D
Sbjct: 89  FNYMGMLAVEGTYDKMEALLNQDIHPVDILLMLAASEGDKPKLEELLRAGAKYD 142

[Close]

BLAST of MC00g0202 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-07
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFL-------TNQNLKELLRAGAN 46
           FNYMGMLAVEGTY +MEALL+ +IHPV   L           ++ELL+AGA+
Sbjct: 92  FNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGAD 143

[Close]

BLAST of MC00g0202 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 7.65e-12
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGAN D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYD 138

[Close]

BLAST of MC00g0202 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 4.25e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA+ D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYD 138

[Close]

BLAST of MC00g0202 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.25e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA+ D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYD 138

[Close]

BLAST of MC00g0202 vs. NCBI nr
Match: XP_022150983.1 (protein LHCP TRANSLOCATION DEFECT [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 5.99e-11
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA  D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGATYD 138

[Close]

BLAST of MC00g0202 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 63.9 bits (154), Expect = 6.10e-11
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA  D
Sbjct: 86  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYD 139

[Close]

BLAST of MC00g0202 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.06e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA+ D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYD 138

[Close]

BLAST of MC00g0202 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.06e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA+ D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYD 138

[Close]

BLAST of MC00g0202 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.06e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA+ D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYD 138

[Close]

BLAST of MC00g0202 vs. ExPASy TrEMBL
Match: A0A6J1DAX7 (protein LHCP TRANSLOCATION DEFECT OS=Momordica charantia OX=3673 GN=LOC111019010 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.90e-11
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA  D
Sbjct: 85  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGATYD 138

[Close]

BLAST of MC00g0202 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.95e-11
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFLT-------NQNLKELLRAGANSD 47
           FNYMGMLAVEGTY++MEALLSQDIHPV   L           L+ELLRAGA  D
Sbjct: 86  FNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYD 139

[Close]

BLAST of MC00g0202 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-08
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1   FNYMGMLAVEGTYEEMEALLSQDIHPVYSFL-------TNQNLKELLRAGAN 46
           FNYMGMLAVEGTY +MEALL+ +IHPV   L           ++ELL+AGA+
Sbjct: 92  FNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGAD 143

The following BLAST results are available for this feature:

BLAST of MC00g0202 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YLX7	9.3e-10	62.96	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	9.3e-10	62.96	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]
Q8VY88	4.3e-07	55.77	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]

BLAST of MC00g0202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903413.1	7.65e-12	66.67	protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]	[more]
XP_008463435.1	4.25e-11	64.81	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei...	[more]
XP_004152919.1	4.25e-11	64.81	protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro...	[more]
XP_022150983.1	5.99e-11	64.81	protein LHCP TRANSLOCATION DEFECT [Momordica charantia]	[more]
XP_022985270.1	6.10e-11	64.81	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]

BLAST of MC00g0202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BT07	2.06e-11	64.81	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0L309	2.06e-11	64.81	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A1S3CJ75	2.06e-11	64.81	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]
A0A6J1DAX7	2.90e-11	64.81	protein LHCP TRANSLOCATION DEFECT OS=Momordica charantia OX=3673 GN=LOC111019010...	[more]
A0A6J1JAV9	2.95e-11	64.81	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]

BLAST of MC00g0202 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	3.1e-08	55.77	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0202.1	MC00g0202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma