Lsi11G017240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G017240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-CH-type domain-containing protein
Location	chr11: 25314337 .. 25315839 (-)
RNA-Seq Expression	Lsi11G017240
Synteny	Lsi11G017240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGATTCTCGCCCATTTAATCTTTTTAACTCTTTTATCATTCATTCCATACTTGTTTCTTCGAACCGATCTGAAATTACCTGAAGCTGACTGGAGCATTTGAAGCAGCAATTCAATTACCTTACAACGCCCTTCATTTTCATTATTTTGTTCTGATGGTGGTATGGGGCTTTGAAATTCCATGATAGGTAAACTTATTCGTGGAGACGAACCATCGATATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAATTCCTCTGATCTTCATCTCTCCGCTCTTTGCCATTTTCGATATCAGATATGGTGCGCTTAATAGAACTCCAATTCAATATCATCCCTTTCTAATGATAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGATGAGCGATAGTCTTTCTCGAACATCCTATCATCACATTAACCAGTAATAAAGTTTCCACACCTGCAATCCCGAACCTCGGAATAAGGAAAAACAACAGTTTCACATAGAGAGGAATTGACAAACATGTGTATATAATATATATAGTTCTCATCTCACATTTCATGCCTAAATAAACCAGCAGAAGAGAGATCAAGATCATACAGACTAGTTATATAGAACAGTGCAAATGAAAAAGGATACTCAATAATTTTATGCCAAGAATAAGAAAATTCAAAATAGTTAGCCAGAGAGAGAGAAATGCAATGCAAACTACAGAAATGGTTATAATTCACTAAACTATTTACCCTTTCCATATTAAAATTTATTTTCTCAGGCACGTCTTTGTCGAGCCATCGAACAAAGAAGGCATGCACTAAGCGTAGAGATCACAAATAGATCTTTATATGGTCGTTCCTGCTTTCTAGTTTCTAAACATAATTACCTTGCATCTTAAATGAATAGCCATGTAACAATTCTAATAAATTAGTCCATTT

mRNA sequence

TCTGATTCTCGCCCATTTAATCTTTTTAACTCTTTTATCATTCATTCCATACTTGTTTCTTCGAACCGATCTGAAATTACCTGAAGCTGACTGGAGCATTTGAAGCAGCAATTCAATTACCTTACAACGCCCTTCATTTTCATTATTTTGTTCTGATGGTGGTATGGGGCTTTGAAATTCCATGATAGGTAAACTTATTCGTGGAGACGAACCATCGATATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGATGAGCGATAGTCTTTCTCGAACATCCTATCATCACATTAACCAGTAATAAAGTTTCCACACCTGCAATCCCGAACCTCGGAATAAGGAAAAACAACAGTTTCACATAGAGAGGAATTGACAAACATGTGTATATAATATATATAGTTCTCATCTCACATTTCATGCCTAAATAAACCAGCAGAAGAGAGATCAAGATCATACAGACTAGTTATATAGAACAGTGCAAATGAAAAAGGATACTCAATAATTTTATGCCAAGAATAAGAAAATTCAAAATAGTTAGCCAGAGAGAGAGAAATGCAATGCAAACTACAGAAATGGTTATAATTCACTAAACTATTTACCCTTTCCATATTAAAATTTATTTTCTCAGGCACGTCTTTGTCGAGCCATCGAACAAAGAAGGCATGCACTAAGCGTAGAGATCACAAATAGATCTTTATATGGTCGTTCCTGCTTTCTAGTTTCTAAACATAATTACCTTGCATCTTAAATGAATAGCCATGTAACAATTCTAATAAATTAGTCCATTT

Coding sequence (CDS)

ATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGA

Protein sequence

MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESSRQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG

Homology

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BLAST of Lsi11G017240 vs. ExPASy Swiss-Prot
Match: F4JKK0 (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05
Identity = 30/115 (26.09%), Postives = 46/115 (40.00%), Query Frame = 0


Query: 27  PHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESSRQPESHQNCIIDIKSNGESVDDEDSN 86
           P +   + G      V E             ++S  P S+ +  +   +    VDD D +
Sbjct: 5   PADSLSISGAAASEVVSEPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGSRYVDD-DED 64

Query: 87  EEKVCRICHLGYEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEIC 142
           EE VCRIC     +     + +   C+C   +   H+DC   W  H   RQCE+C
Sbjct: 65  EEDVCRIC----RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 114

[Close]

BLAST of Lsi11G017240 vs. ExPASy Swiss-Prot
Match: Q32L65 (E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-04
Identity = 24/71 (33.80%), Postives = 31/71 (43.66%), Query Frame = 0


Query: 83  EDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICG 142
           E  ++   CRICH G   ES+ S      C C   LG  H+ C E W        CE+C 
Sbjct: 56  ETPSDGPFCRICHEGANGESLLSP-----CGCSGTLGAVHKSCLERWLSSSNTSYCELCH 115

Query: 143 QTATNVRRNRS 154
                 +R+RS
Sbjct: 116 TEFAVEKRSRS 121

[Close]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A1S3CJ88 (probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.9e-102
Identity = 187/214 (87.38%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSSG  SP+EPETI  SPSRP E KGVIGGEG  YV E+E + KRHG+EMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
            QPES QNCIIDIKSNGESVDDEDS+EEKVCRICHLG EHESITSDLIHLGCSCKDELGI
Sbjct: 61  -QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSS F I RNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF ADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A0A0LUV6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.9e-101
Identity = 184/214 (85.98%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSSG  SPDEP+TI+ SPSRP E KGVIGGEG   V E+E + KRHG EMLE+S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
            QPESHQNCIIDIK+NGESVDDEDS+EEKVCRICHLG E+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSS F I RNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF ADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1D2I2 (uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016745 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82
Identity = 161/214 (75.23%), Postives = 172/214 (80.37%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MIKQDEGSSGT + DE  T++  P RP E K V GG  +N  H     GKRHG+E     
Sbjct: 1   MIKQDEGSSGTPNRDESVTVLALPPRPQEAKEVTGGVVQN--HNENEAGKRHGEE----- 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
              ESH NCIIDIKS+GESVD EDS+EEKVCRICHL  EH+SI SDLI LGC CKDELGI
Sbjct: 61  -SKESHHNCIIDIKSSGESVDGEDSSEEKVCRICHLSSEHQSIASDLIQLGCRCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVR  RS GF IQRNERRLVASSTVSTVSLD++ 
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRGIRSGGFMIQRNERRLVASSTVSTVSLDSDD 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF  DFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRLDFFG 206

[Close]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1ESF7 (uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437147 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 153/213 (71.83%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSS T SPDEPE +I SP+RP E K V+      + HE EG GK        SS
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSEHEHEHEHEGAGK--------SS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
           RQPESH  CIIDIKS GES+DD +S+ EKVCRICHL  + ES++SDL++LGC CK ELG+
Sbjct: 61  RQPESHHTCIIDIKSTGESMDDANSSNEKVCRICHLSSD-ESVSSDLVNLGCRCKGELGM 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVR NRSS F IQRNERR+VASS+VS VSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFF 214
            LSCCWGQRFCNFLLTCT+LAFLLPWFF  +FF
Sbjct: 181 PLSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1JNU4 (uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486158 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.9e-79
Identity = 152/213 (71.36%), Postives = 173/213 (81.22%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSS T SPDEPE +I  P+RP E K V+    R++ HE EG GK        SS
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGK--------SS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
           RQPES   CIIDIKS GES+DD +S++EKVCRICHL  + +S+TSDL++LGC CK ELG+
Sbjct: 61  RQPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSD-QSVTSDLVNLGCRCKGELGM 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWF HRGNRQCEICGQTATNVR NRSS F IQRNERR+VASS+VS VSLDNEV
Sbjct: 121 SHRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFF 214
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF  +FF
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_038887762.1 (probable E3 ubiquitin ligase SUD1 [Benincasa hispida])

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102
Identity = 187/214 (87.38%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MIKQDEGSSG  SP+E  TI  SPSRPHE KGVIGGE  N VHE+E DGKRHG+EM ESS
Sbjct: 1   MIKQDEGSSGITSPNESGTIAASPSRPHEAKGVIGGESENRVHENEEDGKRHGEEMQESS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
           RQPES+QNCIIDIKSNG S+D EDS+EEKVCRICHL  EHESITSDLIHLGCSCKDELGI
Sbjct: 61  RQPESNQNCIIDIKSNGGSMDGEDSSEEKVCRICHLSSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGF IQ+NERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFAIQQNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF  DFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRVDFFG 214

[Close]

BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_008463280.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 187/214 (87.38%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSSG  SP+EPETI  SPSRP E KGVIGGEG  YV E+E + KRHG+EMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
            QPES QNCIIDIKSNGESVDDEDS+EEKVCRICHLG EHESITSDLIHLGCSCKDELGI
Sbjct: 61  -QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSS F I RNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF ADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_011653704.1 (probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypothetical protein Csa_013679 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 184/214 (85.98%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSSG  SPDEP+TI+ SPSRP E KGVIGGEG   V E+E + KRHG EMLE+S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
            QPESHQNCIIDIK+NGESVDDEDS+EEKVCRICHLG E+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSS F I RNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF ADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_022147939.1 (uncharacterized protein LOC111016745 [Momordica charantia])

HSP 1 Score: 316.2 bits (809), Expect = 2.1e-82
Identity = 161/214 (75.23%), Postives = 172/214 (80.37%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MIKQDEGSSGT + DE  T++  P RP E K V GG  +N  H     GKRHG+E     
Sbjct: 1   MIKQDEGSSGTPNRDESVTVLALPPRPQEAKEVTGGVVQN--HNENEAGKRHGEE----- 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
              ESH NCIIDIKS+GESVD EDS+EEKVCRICHL  EH+SI SDLI LGC CKDELGI
Sbjct: 61  -SKESHHNCIIDIKSSGESVDGEDSSEEKVCRICHLSSEHQSIASDLIQLGCRCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVR  RS GF IQRNERRLVASSTVSTVSLD++ 
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRGIRSGGFMIQRNERRLVASSTVSTVSLDSDD 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG 215
           SLSCCWGQRFCNFLLTCT+LAFLLPWFF  DFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRLDFFG 206

[Close]

BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_022930769.1 (uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata])

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-79
Identity = 153/213 (71.83%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 1   MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESS 60
           MI+Q+EGSS T SPDEPE +I SP+RP E K V+      + HE EG GK        SS
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSEHEHEHEHEGAGK--------SS 60

Query: 61  RQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGI 120
           RQPESH  CIIDIKS GES+DD +S+ EKVCRICHL  + ES++SDL++LGC CK ELG+
Sbjct: 61  RQPESHHTCIIDIKSTGESMDDANSSNEKVCRICHLSSD-ESVSSDLVNLGCRCKGELGM 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVR NRSS F IQRNERR+VASS+VS VSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTILAFLLPWFFHADFF 214
            LSCCWGQRFCNFLLTCT+LAFLLPWFF  +FF
Sbjct: 181 PLSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-23
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 71  IDIKSNGESVDDED--SNEEKVCRICHLGYE---HESITSDLIHLGCSCKDELGISHRDC 130
           +D +++ ESV       + EK CRICHLG E   HE    D + LGCSCKD+LG  H+ C
Sbjct: 56  LDDETDTESVASGSIRGSPEKDCRICHLGLESSRHE--CGDPMVLGCSCKDDLGYVHKQC 115

Query: 131 AEIWFMHRGNRQCEICGQTATNVRR--NRSSGFTIQRNERRLVASSTVSTVSLDNEVSLS 190
           A+ WF  +GN+ CEIC   A N  +  N     T++ N   + A +T + V+  +     
Sbjct: 116 ADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRR 175

Query: 191 CCWGQRFCNFLLTCTILAFLLPWFFH 210
            C G RF NFLLTC + AF++ WFFH
Sbjct: 176 LCRGNRFLNFLLTCMVCAFVISWFFH 199

[Close]

BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 3.2e-20
Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 85  SNEEKVCRICHLGYEHESITSDL-IHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQ 144
           S  E+ CRICH+  +  ++ S + I LGCSCK +L  +H+ CAE WF  +GN+ CE+CG 
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

Query: 145 TATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTILAFL 204
            A NV  +        RNE   V + T+ T         S   G RF NFLL C + AF+
Sbjct: 133 IAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 192

Query: 205 LPWFFH 210
           + W FH
Sbjct: 193 ISWLFH 198

[Close]

BLAST of Lsi11G017240 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-19
Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 76  NGESVDDEDSN--EEKVCRICHLGYEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHR 135
           +   +DD+D+    EK CRICHLG E        I LGCSCKD+L ++HR CAE WF  +
Sbjct: 67  SSSEIDDDDATAPPEKDCRICHLGVETSG--GGAIELGCSCKDDLAVAHRQCAETWFKIK 126

Query: 136 GNRQCEICGQTATNV-RRNRSSGFTIQ----RNERRLVASSTVSTVSLDNEVSLSCCW-G 195
           G++ CEIC   A NV   N   G T++    RN     A        ++N       W  
Sbjct: 127 GDKTCEICQSVARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENR------WQP 186

Query: 196 QRFCNFLLTCTILAFLLPWFFH 210
           QR  N +L C +  F + W FH
Sbjct: 187 QRVVNLVLACMVFGFFISWIFH 200

[Close]

BLAST of Lsi11G017240 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-15
Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 88  EKVCRICHLGYEH--------ESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCE 147
           E++CRICH G +         +S++ +LI +GC CK+ELG++H  CAE WF  RGN  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 148 ICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNE----VSLSCCWGQRFCNFLL 207
           ICG TA NV       ++ +R+             +LD         SCC    F  FLL
Sbjct: 159 ICGCTAKNVTVRLMEDWSGERDN------------TLDGRRRRGRGQSCC---IFMVFLL 212

Query: 208 TCTILAFLLPWFF 209
           T      LL WFF
Sbjct: 219 T----ILLLHWFF 212

[Close]

BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-14
Identity = 49/153 (32.03%), Postives = 70/153 (45.75%), Query Frame = 0


Query: 57  LESSRQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKD 116
           LE++++ E       D   + E  +DE+  EE+         E E      + LGCSCK 
Sbjct: 88  LETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEE---------EEEEYYGLPLQLGCSCKG 147

Query: 117 ELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSL 176
           +LG++H  CAE WF  +GN  CEICG  A NV   +S+  +      +  A       SL
Sbjct: 148 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQ-----SL 207

Query: 177 DNEVSLSCCWGQRFCNFLLTCTILAFLLPWFFH 210
                     G+   NFLL   + AF++ W FH
Sbjct: 208 TQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFH 226

The following BLAST results are available for this feature:

BLAST of Lsi11G017240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JKK0	4.8e-05	26.09	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 S...	[more]
Q32L65	2.4e-04	33.80	E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1	[more]

BLAST of Lsi11G017240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJ88	9.9e-102	87.38	probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 S...	[more]
A0A0A0LUV6	4.9e-101	85.98	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G09661...	[more]
A0A6J1D2I2	1.0e-82	75.23	uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1ESF7	1.4e-79	71.83	uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JNU4	6.9e-79	71.36	uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi11G017240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887762.1	1.1e-102	87.38	probable E3 ubiquitin ligase SUD1 [Benincasa hispida]	[more]
XP_008463280.1	2.0e-101	87.38	PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo]	[more]
XP_011653704.1	1.0e-100	85.98	probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypot...	[more]
XP_022147939.1	2.1e-82	75.23	uncharacterized protein LOC111016745 [Momordica charantia]	[more]
XP_022930769.1	2.9e-79	71.83	uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lsi11G017240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01070.2	2.4e-23	41.78	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	3.2e-20	40.48	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	7.9e-19	38.03	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	5.3e-15	38.35	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.0e-14	32.03	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 90..142 e-value: 1.3E-11 score: 54.5
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 91..141 e-value: 3.0E-8 score: 33.7
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 83..148 score: 19.134903
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 74..154 e-value: 1.9E-15 score: 58.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..61
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 9..212
None	No IPR available	PANTHER	PTHR46214:SF8	OS01G0731800 PROTEIN	coord: 9..212
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 85..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G017240.1	Lsi11G017240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding