Lsi11G017240 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTGATTCTCGCCCATTTAATCTTTTTAACTCTTTTATCATTCATTCCATACTTGTTTCTTCGAACCGATCTGAAATTACCTGAAGCTGACTGGAGCATTTGAAGCAGCAATTCAATTACCTTACAACGCCCTTCATTTTCATTATTTTGTTCTGATGGTGGTATGGGGCTTTGAAATTCCATGATAGGTAAACTTATTCGTGGAGACGAACCATCGATATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAATTCCTCTGATCTTCATCTCTCCGCTCTTTGCCATTTTCGATATCAGATATGGTGCGCTTAATAGAACTCCAATTCAATATCATCCCTTTCTAATGATAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGATGAGCGATAGTCTTTCTCGAACATCCTATCATCACATTAACCAGTAATAAAGTTTCCACACCTGCAATCCCGAACCTCGGAATAAGGAAAAACAACAGTTTCACATAGAGAGGAATTGACAAACATGTGTATATAATATATATAGTTCTCATCTCACATTTCATGCCTAAATAAACCAGCAGAAGAGAGATCAAGATCATACAGACTAGTTATATAGAACAGTGCAAATGAAAAAGGATACTCAATAATTTTATGCCAAGAATAAGAAAATTCAAAATAGTTAGCCAGAGAGAGAGAAATGCAATGCAAACTACAGAAATGGTTATAATTCACTAAACTATTTACCCTTTCCATATTAAAATTTATTTTCTCAGGCACGTCTTTGTCGAGCCATCGAACAAAGAAGGCATGCACTAAGCGTAGAGATCACAAATAGATCTTTATATGGTCGTTCCTGCTTTCTAGTTTCTAAACATAATTACCTTGCATCTTAAATGAATAGCCATGTAACAATTCTAATAAATTAGTCCATTT TCTGATTCTCGCCCATTTAATCTTTTTAACTCTTTTATCATTCATTCCATACTTGTTTCTTCGAACCGATCTGAAATTACCTGAAGCTGACTGGAGCATTTGAAGCAGCAATTCAATTACCTTACAACGCCCTTCATTTTCATTATTTTGTTCTGATGGTGGTATGGGGCTTTGAAATTCCATGATAGGTAAACTTATTCGTGGAGACGAACCATCGATATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGATGAGCGATAGTCTTTCTCGAACATCCTATCATCACATTAACCAGTAATAAAGTTTCCACACCTGCAATCCCGAACCTCGGAATAAGGAAAAACAACAGTTTCACATAGAGAGGAATTGACAAACATGTGTATATAATATATATAGTTCTCATCTCACATTTCATGCCTAAATAAACCAGCAGAAGAGAGATCAAGATCATACAGACTAGTTATATAGAACAGTGCAAATGAAAAAGGATACTCAATAATTTTATGCCAAGAATAAGAAAATTCAAAATAGTTAGCCAGAGAGAGAGAAATGCAATGCAAACTACAGAAATGGTTATAATTCACTAAACTATTTACCCTTTCCATATTAAAATTTATTTTCTCAGGCACGTCTTTGTCGAGCCATCGAACAAAGAAGGCATGCACTAAGCGTAGAGATCACAAATAGATCTTTATATGGTCGTTCCTGCTTTCTAGTTTCTAAACATAATTACCTTGCATCTTAAATGAATAGCCATGTAACAATTCTAATAAATTAGTCCATTT ATGATCAAACAAGATGAAGGATCAAGTGGAACAAGAAGTCCAGATGAACCTGAGACAATCATCACATCGCCATCAAGACCTCATGAAGTGAAAGGGGTGATTGGAGGGGAAGGCCGGAACTATGTGCACGAGAGTGAAGGGGATGGCAAGAGGCACGGAGATGAAATGCTAGAGAGCTCAAGACAGCCAGAGAGCCATCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGACGATGAAGATTCAAATGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTACGAACACGAGTCAATAACTTCAGATCTCATACACCTTGGATGTAGCTGCAAAGACGAGCTTGGAATATCCCACCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAGTGTGAGATTTGTGGTCAGACCGCAACAAATGTAAGGAGAAACAGGAGTAGCGGTTTCACGATACAGCGGAATGAGAGGAGGTTGGTCGCAAGCTCAACCGTGTCTACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGCCAGCGCTTCTGTAATTTCCTATTAACATGCACAATTTTAGCCTTCCTCCTCCCATGGTTTTTTCATGCCGATTTCTTCGGATGA MIKQDEGSSGTRSPDEPETIITSPSRPHEVKGVIGGEGRNYVHESEGDGKRHGDEMLESSRQPESHQNCIIDIKSNGESVDDEDSNEEKVCRICHLGYEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFTIQRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTILAFLLPWFFHADFFG Homology
BLAST of Lsi11G017240 vs. ExPASy Swiss-Prot
Match: F4JKK0 (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05 Identity = 30/115 (26.09%), Postives = 46/115 (40.00%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy Swiss-Prot
Match: Q32L65 (E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 2.4e-04 Identity = 24/71 (33.80%), Postives = 31/71 (43.66%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A1S3CJ88 (probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 9.9e-102 Identity = 187/214 (87.38%), Postives = 196/214 (91.59%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A0A0LUV6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G096610 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 4.9e-101 Identity = 184/214 (85.98%), Postives = 196/214 (91.59%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1D2I2 (uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016745 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82 Identity = 161/214 (75.23%), Postives = 172/214 (80.37%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1ESF7 (uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437147 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79 Identity = 153/213 (71.83%), Postives = 172/213 (80.75%), Query Frame = 0
BLAST of Lsi11G017240 vs. ExPASy TrEMBL
Match: A0A6J1JNU4 (uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486158 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 6.9e-79 Identity = 152/213 (71.36%), Postives = 173/213 (81.22%), Query Frame = 0
BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_038887762.1 (probable E3 ubiquitin ligase SUD1 [Benincasa hispida]) HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102 Identity = 187/214 (87.38%), Postives = 195/214 (91.12%), Query Frame = 0
BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_008463280.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo]) HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101 Identity = 187/214 (87.38%), Postives = 196/214 (91.59%), Query Frame = 0
BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_011653704.1 (probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypothetical protein Csa_013679 [Cucumis sativus]) HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100 Identity = 184/214 (85.98%), Postives = 196/214 (91.59%), Query Frame = 0
BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_022147939.1 (uncharacterized protein LOC111016745 [Momordica charantia]) HSP 1 Score: 316.2 bits (809), Expect = 2.1e-82 Identity = 161/214 (75.23%), Postives = 172/214 (80.37%), Query Frame = 0
BLAST of Lsi11G017240 vs. NCBI nr
Match: XP_022930769.1 (uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata]) HSP 1 Score: 305.8 bits (782), Expect = 2.9e-79 Identity = 153/213 (71.83%), Postives = 172/213 (80.75%), Query Frame = 0
BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 106.7 bits (265), Expect = 2.4e-23 Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0
BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 96.3 bits (238), Expect = 3.2e-20 Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 0
BLAST of Lsi11G017240 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 91.7 bits (226), Expect = 7.9e-19 Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = 0
BLAST of Lsi11G017240 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 79.0 bits (193), Expect = 5.3e-15 Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0
BLAST of Lsi11G017240 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 77.0 bits (188), Expect = 2.0e-14 Identity = 49/153 (32.03%), Postives = 70/153 (45.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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