Lsi11G012570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G012570
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExpansin-like A2
Locationchr11: 21194039 .. 21195271 (+)
RNA-Seq ExpressionLsi11G012570
SyntenyLsi11G012570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAACCCTAAAGAATTTTCTTAATTAATTAGCAAAATTAATGGCTTGGTTATTTCTTGGTTTTCTCTTTCTCTTTTTAATTTCTTCTACTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATGTAAAAATAAATAAATAATATTTTTAGTTACCTTTCTTTGAATAATAATTGCATTAAGATTTTGTTATAATTAATATGGGTTGGTTTATCTTATCCATTTGGAACAGATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGGTCATTATTTCCTTTTCTTTTCATTTCTATTTCTTTTTATTTTATTTTTTAGTACGAAAGTGAAAGCGAAAGTGTAAATTGGAGATCGAACCTCCGACTTTAAGGAAAGTTATATAGATTTTTTTATGAAAAGTTGACAACTAATTACTAGCTATAGTGTATATTAAAGGGTAGTATATTAAATTTTCGTCGATATATCGGTATTTTCTTAAGTTCATAGATTCGACATTTACATAAGGGATGAATCGATATTTCTATTATATTGTGAAAAAATCAATGAAACATAATAATAATAATAATAATAATAATAACACCACCATATAACCAAATATAATATAAATAATAAACATTTTAATTTATAGCAAAGTATAAAAGATATTTACAAGTATAGAAATATTTTACTGTCTATCAACGATATACCACGACAGACTATAAATTTTTTCTATATTTGTAAATAGTTTGATATTTTTTATGTTTATAATAATTTCTCAAATATTTATTTAGTAATTTAAATAATTTTTAAAATTCCTTTTCGTTTTTATTAATTTTTCATAAATATTCATCAATATCGACATATTATATCAATATTTTTATCGATATTTTTATAAAATTGAAATCTCAATATTTTCATGGATATCGACATTTCAAACCTTATTATTAATTTTTTTTTTTAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

mRNA sequence

AATTAACCCTAAAGAATTTTCTTAATTAATTAGCAAAATTAATGGCTTGGTTATTTCTTGGTTTTCTCTTTCTCTTTTTAATTTCTTCTACTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

Coding sequence (CDS)

ATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

Protein sequence

MLVIVVFINLKLATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
Homology
[Close]
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match: A0A5D3DIX9 (Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003910 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 1  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA-- 60
          MLVIVVF NL+ L T  IH  HME HV M IWP   L A LQ LSL   +KE VV LA  
Sbjct: 1  MLVIVVFPNLRQLITTRIHQPHMEVHVGMEIWPWKCLKAILQPLSLLSIEKEWVVVLATR 60

Query: 61 ----ISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
              +S++AF  MAL+GKG  LL  G+VD+EYKR
Sbjct: 61 TDFVVSRKAFSAMALDGKGQQLLKTGIVDIEYKR 94

[Close]
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match: A0A6J1C4W7 (expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007952 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGV+DVEYKR
Sbjct: 84  CNTVGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVIDVEYKR 135

[Close]
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match: A0A6J1GKX8 (expansin-like A3 OS=Cucurbita moschata OX=3662 GN=LOC111455269 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN+L   + L      + +    L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 84  CNTLGTKVVLTD---QNNDNATDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 135

[Close]
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match: A0A5D3DJC4 (Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003900 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 56  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 72  LVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 103

[Close]
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match: A0A1S3BJD7 (expansin-like A2 OS=Cucumis melo OX=3656 GN=LOC103490240 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 56  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 104 LVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 135

[Close]
BLAST of Lsi11G012570 vs. NCBI nr
Match: TYK23330.1 (expansin-like A2 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-12
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 1  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA-- 60
          MLVIVVF NL+ L T  IH  HME HV M IWP   L A LQ LSL   +KE VV LA  
Sbjct: 1  MLVIVVFPNLRQLITTRIHQPHMEVHVGMEIWPWKCLKAILQPLSLLSIEKEWVVVLATR 60

Query: 61 ----ISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
              +S++AF  MAL+GKG  LL  G+VD+EYKR
Sbjct: 61 TDFVVSRKAFSAMALDGKGQQLLKTGIVDIEYKR 94

[Close]
BLAST of Lsi11G012570 vs. NCBI nr
Match: KAG6572153.1 (Expansin-like A2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 22  MEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAI 59
           M EHVVMA WPC+SLMASLQLL LPFTDKEL VALAI
Sbjct: 77  MGEHVVMATWPCSSLMASLQLLCLPFTDKELAVALAI 113

[Close]
BLAST of Lsi11G012570 vs. NCBI nr
Match: XP_031744987.1 (expansin-like A2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 84  CNTIGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 135

[Close]
BLAST of Lsi11G012570 vs. NCBI nr
Match: KAE8645685.1 (hypothetical protein Csa_020282 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 289 CNTIGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 340

[Close]
BLAST of Lsi11G012570 vs. NCBI nr
Match: XP_022136197.1 (expansin-like A2 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGV+DVEYKR
Sbjct: 84  CNTVGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVIDVEYKR 135

The following BLAST results are available for this feature:
BLAST of Lsi11G012570 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G012570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DIX93.9e-1256.38Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003... [more]
A0A6J1C4W74.9e-0760.00expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007952 PE=3 SV=1[more]
A0A6J1GKX84.9e-0761.82expansin-like A3 OS=Cucurbita moschata OX=3662 GN=LOC111455269 PE=3 SV=1[more]
A0A5D3DJC46.4e-0793.75Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003... [more]
A0A1S3BJD76.4e-0793.75expansin-like A2 OS=Cucumis melo OX=3656 GN=LOC103490240 PE=3 SV=1[more]
BLAST of Lsi11G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23330.18.0e-1256.38expansin-like A2 [Cucumis melo var. makuwa][more]
KAG6572153.15.9e-0786.49Expansin-like A2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031744987.15.9e-0761.82expansin-like A2 [Cucumis sativus][more]
KAE8645685.15.9e-0761.82hypothetical protein Csa_020282 [Cucumis sativus][more]
XP_022136197.11.0e-0660.00expansin-like A2 [Momordica charantia][more]
BLAST of Lsi11G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G012570.1Lsi11G012570.1mRNA