Lsi11G006050 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G006050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L18
Location	chr11: 6403796 .. 6406332 (+)
RNA-Seq Expression	Lsi11G006050
Synteny	Lsi11G006050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTACACCACTTTGGCCTTCGTCTTCGATAAAAAGGGTCTTCAAAAACCCTAAAGCCATTTTCCTTCACTCATAGCAGTCGCCGTTGCAGAAGGGAAGGGCTTCTCCACCAAAAGCTCCAATGGTCCGTCTCTTTATGTTCCTCTTTCTCTCTTCCGTTCTGTTTCTCTGCATTCAGTGGCGTAGATCAATGTATGAGATGCGTTTTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGGTTGGTTTTTCTAATCATCATTGGTTCCGCTCTGCTCACGAGCTCTTGCTTTCATGTGGCTTTTTCTTAGAGTATGGAGATAAATTCTTAGGGCTTCCTTTTTTCTTAATGAAAAAGTACGTTGTGATTTAAATTATGATATAGTGAATGGAGAATGTAGTTTCAAATTTAATTCTGCAAGCATTATTTTGAACTTCCTTTTTCTTGCGTTTGAAATCTCGTTGTTTGATTTGAAAGTAGAGGAACATTTATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGAACTATTTCCACATTTATCTGAGTCCAGGTTTAAACTTAAATGTTCTTGTTCAATTTGAACTCTGAAGCAGACTATATCGTTCAGGCCATTAGTAAACCGTGATTTCAAAAGCTTAGTTTTGGAACCTCTTTGTTTGATTTGAAAGTAGAGGAACATTTATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGGACTATTTCCACATTTATCTGAGCCCAGGTTTAGATTTAAATGTTCTTGTTCAATTTGAACTATGAAGCAGAATATATCGTTCATCATAGGCCGTTAATAAACCTTGATTTCAAAAGTTTAGTTTTGGAACCTCTTTTGTACATATGGGGTCAATATTTGAATTTCTTTATTTATATTTTGATTGGAATTCGATTGTTATCTAAGTTGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTTTGTAGGTCAAGGACTGGACTAAATCCACATATTTATCTGAGCTCACCATATTCTACCCTAAAAGTTTCTTTCATTTCTTTTTGAATTTGAAAGTAAAATAAAGATAAAAAATTTGGGTCATGTATTAATTACTGAACCCTCGGCCCATCCTTTTGATGTTTCCGTCAGTTGCTATATTTTCTCTTCATTTTTGAAACGATGTCTGGACTTTTCAATATCAAATTAAGGCTACCTTTCATCCTTATGGAGAGATAGGTTATTTTTCCCTGTGATGCTTCAAAAACCATGCTAATACTGATCACACAATGATTGATCTTCATTTTCAACTCTCTGAGGGAACTAGCCTACAGTCCTAAATCAATTATTTCCAGAGGAGTTTTGTGTTTGTTTGCATATCGATTATTGTAACCTTTTCCCCCAAGCTCAGTAGTGTGTTATTTGGATTGCTTAAATGACCGATCTTTAATCTTGTTTACTGAATTCAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGTTTGTGCTTCTATTATGCATTACACGTCCTTTACATTTTGATATCAGCTTTGCAGGATTGTTATTTTCCGTTGTCTAAATTCTCTGGTGGTTAACATGGTGTAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTACGATTGCAAGCCCCATCTTTCACACTCAAACACAACCTCTGTTATGCCGAAGCAACTGTGATGCTTATAAAATGCTCCTGAATGTTATATCTGCCTATTTTATTTAGCTATGTCCTATATTTTATCAGTTCATGCTTATCTTAGAAGCATCAGTCTGTCAAACAACATGAATGAATGCTTAGATTCAAACTTAATGTTCTGTTAATTCTGCTTTTGAAGGTTCTTCTTCGTGGACCGAAGAACTCTCGGGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAATCAGCAGGGGATTCAGAGTTTAATTTCAGTATATGTTCAACCCTTTTTGTGAGACAAAAAATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGTGAGACTCAGTCATGTCTTAGTACAAGTTTTCCTTGTTATAAAACCAAAATCGGATTCAGTGAAAGATATTGTTTCAGGACTAA

mRNA sequence

TGGTACACCACTTTGGCCTTCGTCTTCGATAAAAAGGGTCTTCAAAAACCCTAAAGCCATTTTCCTTCACTCATAGCAGTCGCCGTTGCAGAAGGGAAGGGCTTCTCCACCAAAAGCTCCAATGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAACTCTCGGGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAATCAGCAGGGGATTCAGAGTTTAATTTCAGTATATGTTCAACCCTTTTTGTGAGACAAAAAATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGTGAGACTCAGTCATGTCTTAGTACAAGTTTTCCTTGTTATAAAACCAAAATCGGATTCAGTGAAAGATATTGTTTCAGGACTAA

Coding sequence (CDS)

ATGGGGATCGATCTTGTAGCAGGAGGCAAGAGTAAGAAGACCAAAAGGACCGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTCAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGGTCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCGATTTCACTATCCAGACTTATCAAGTACATGAAGGGCAAGGAAGGAAAAATTGCCGTCCTTGTTGGAACCGTGACAGATGACATTCGCGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGATCAGCTTGCATTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAACTCTCGGGAAGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTACGTTAGGTCGAAGGGAAGAAAATTTGAGAGAGCAAGAGGAAAGAGAATCAGCAGGGGATTCAGAGTTTAA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRISRGFRV

Homology

[Close]

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.6e-89
Identity = 163/187 (87.17%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAV+LKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 ISRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 328.9 bits (842), Expect = 3.6e-89
Identity = 162/187 (86.63%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN V+LKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 ISRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.4e-85
Identity = 159/184 (86.41%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAV+LKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIKYM+GKEGKI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRISR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GFRV 188
           GFRV
Sbjct: 181 GFRV 183

[Close]

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 298.1 bits (762), Expect = 6.8e-80
Identity = 150/188 (79.79%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAV+LKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RISRGFRV 188
           R SRGF+V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot
Match: Q5E973 (60S ribosomal protein L18 OS=Bos taurus OX=9913 GN=RPL18 PE=2 SV=3)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 127/188 (67.55%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN VVLKRLFMS+ N+P
Sbjct: 1   MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 60

Query: 61  PISLSRLIKYMK--GKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
           P+SLSR+I+ MK  G+EGK AV+VGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+
Sbjct: 61  PLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGK 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct: 121 ILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRISRGFR 187
           +R SRG++
Sbjct: 181 RRASRGYK 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.6e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL
Match: A0A1S3BYV3 (60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.6e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL
Match: A0A0A0LFX7 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G032220 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.0e-95
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYM GKEG+IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL
Match: A0A6J1DTG6 (60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRGFRV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Lsi11G006050 vs. NCBI nr
Match: XP_038891230.1 (60S ribosomal protein L18-3 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 7.2e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRGFRV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Lsi11G006050 vs. NCBI nr
Match: XP_008454015.1 (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa] >TYJ96497.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 9.5e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. NCBI nr
Match: XP_004144773.1 (60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetical protein Csa_021179 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYM GKEG+IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.1e-94
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 2.8e-94
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 ISRGFRV 188
            SRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Lsi11G006050 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-90
Identity = 163/187 (87.17%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAV+LKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 ISRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Lsi11G006050 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-90
Identity = 162/187 (86.63%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN V+LKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE KIAVLVGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 ISRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Lsi11G006050 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRISRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Lsi11G006050 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-55
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEGKIAVLVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+GKIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRISRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of Lsi11G006050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	1.6e-89	87.17	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	3.6e-89	86.63	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	2.4e-85	86.41	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	6.8e-80	79.79	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q5E973	1.1e-64	67.55	60S ribosomal protein L18 OS=Bos taurus OX=9913 GN=RPL18 PE=2 SV=3	[more]

BLAST of Lsi11G006050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3L4	4.6e-95	97.33	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BYV3	4.6e-95	97.33	60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1	[more]
A0A0A0LFX7	6.0e-95	96.79	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1HQ85	1.3e-94	96.79	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1DTG6	2.3e-94	96.26	60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 ...	[more]

BLAST of Lsi11G006050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891230.1	7.2e-95	97.33	60S ribosomal protein L18-3 [Benincasa hispida]	[more]
XP_008454015.1	9.5e-95	97.33	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosoma...	[more]
XP_004144773.1	1.2e-94	96.79	60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetical protein C...	[more]
KAG7021075.1	2.1e-94	96.79	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965965.1	2.8e-94	96.79	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]

BLAST of Lsi11G006050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	1.2e-90	87.17	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	2.6e-90	86.63	ribosomal protein L18	[more]
AT2G47570.1	2.1e-55	78.52	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	2.1e-55	78.52	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 6.8E-100 score: 334.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 2.0E-94 score: 314.3
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006050.1	Lsi11G006050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome