Lsi11G000030 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCCAACCACGGAGGAGAGGGAGCCGGTCGGAATTGAACTGCCGGAGATCGGAAGAATAAGAAGCTTTAGTTTGTCATTCCGCCAACAGAATTCGAGTTTTCGAAGCAACTCAGCTGCAGCGGTAGTGGACGAGGACGAGAGGGATACTGTAGATGCTTCTCTTTGGGCAGCGGTCGAGAGATTACCGACGCTTGAACGGTTGAGATCATCGTTGTTCGACGATATTGGAGGAGTAGAAGTTGAGGAGAAAGGTGGGAGAAGAGTTGTTGATGTTACTAAGCTTGGAGATGTGGAGCGCCATCTCTTTATTCAAAAACTCATCAAACACATTGAAAATGATAATCTCAAGCTCTTAACGAAAATTAAAGAGAGAATCCACGAGTAAGCAATTATCTCTCTCTATAGACACTATAGATCATCTATCACAGTCTATCACTGATAGGTACTATAGATTGTCTATCACTGATAGACATGACATTTTGCTACATTTACAAATATTTCCAATAGCTTTGTCATTAAAACAATTATTCTTATTATTTTATTTTTGGTTTAATTGTATTCAATTTAAGTGAAAAAGAGACATGTTTTTTAATTATAAATTTGGTCTCAATGATTTGGAGAAAGTTAAAATTTAATTTCTATAATTTTAGAAATTAGAATTTAGTCTTTATGGTTTGGTAAAACCTTAATTATAAATAATTTCCAAGGTTGTTTTCAAATATAGAAAAATGAGTCAAATTATTTATAAATATAAAAAAATTTCACTGTCTATGAACTATAGACTTCAACTTCTATAGTAGTCTATTGTTGATAGACAGTGAAATTTTTCTATATTTGTAAATAGTTTGATACTTTTTCTATTTATAATAATTTTCCTAATCCCCATTGTCTGATAAAATTTTTATAAAACAGTTCCTACCGTAAACAGTTCCTACCGTAGGGAGTATCTGTAAGAATTTTATTAAAATAGAGAGACTAAATTCTAATTATAAATTATAGAGATTAAATTTTTTTTTTTTAGTATACAAACCAAATTTGTAATTTAACTTTTTTTTAATTTTATATATGAAGGTATTTAAATTTCACTGTACAAGTTTTCTTTTAATTATATTAAATTTGATCGGATGGGGCCAACAATGGAGGGTTGACCAATAAAATAAAACAAAAAAGATTGAATGTCACTTAATTTATATTTTATTTCTCAAACTTTCAACGATTGTTAGATAGAGATTGCCTCAATTTTGATCGACGAGATTGGATAACCACATTGAAATCGTTATAAATTTAGTCATTCATTTTTTTATTTTACTTGTTTTTCTTTTCATTTAGTCTTCTTCGTGAATTATTGTTAGGAGTCATTTGTTTCGTGAGGATCTAAAATTCCTATAGATTGGACATCTAAATTACCATATTTATTTTGTGATAACGTAAGATGTCTTGGTGCACTTACTGATCCCTCATGCTTTGTGAATACTTTTAAAAAAAAAAAAAAGATGCTCAGATATCTAGAGATTCTCAGGTATCCTAGAATATCCACACAGAGGCATCCCAAAGTTGGGATGCGTTCCAGGTAAAATTAATTCCAACTCGTCTCTAACAAGTGTACATTCGAAGTGGATGTTAAGTGTATTAATCTTGGACAGACTTAACGATTTGCACAATCTAGATTGTGTTGGATTTTCTTTTAAGGTAGTGGTATTCTCCGACATAACAATTCATTTTCGGCATCGTTGACGATTAAAATATAGCTACTTCATCTTATTAACTTGGTTTTGCACTTAGCAAAATTGACTCCAAGTATGGGTTGTTCTAAACTAATGGACCATTGTTGGTTTGGTTGGTTAGACTAATTTTAAAGAAATTGGCATACTCTGATGACAAGAAAATACAAATCAGATAATGGACAATCCAAATCAATATTTTGTTAGTCGTATGAATCCATTTCGATTTTTGTTTTTGAAAATTAAGTCTATTTCCTCTCTTTTTTTTTTAACCATAGTTTGCATCTTTCTTAAGTATAAGAATTGAATTCTTAGTCAAATTCCTAAAACAAAAACTACTTGTTTTAGTTTTCAAATTTTGACTTGGTTTTTTCAAAATATTGATAAAAAATAGATAACAAAACAAAAAAAATTTAGAGATGGAGTGGGTGTTTGTATGTGTAATTTTTAAAAACTAGAAATTAACGCCCCGTTTGGTAACAATTTCGTTTTTAGTTTTTGATTTTTGAAAATTAAGCCTATAAATATTTCTTCCACCTCTAAATCTGTTGTTTTAATATCTACTTTTGAAAACTAAAAAAAGTACGTAGTTTTTTTTTAAAAAAAAAAACTTGCTATTTGTTTTTAAAATTTGGTTAAGAATGCAATTCTTCTACTTAAGATTGATACAAAAATAAAAAACGAAATAATTACCTAATAAGATTTAAAAAAATCAAATAGTTATTGAATGAGACGTTAAAATTTAAAATATGAGACACTATGAAATTGTTAATAAAAGGTAATTGTGGTAGGGTTGGTGTGAAATTTCCAACCGTGGAAGTGAAATACAAAAATGTGCATATTGAGGCAGAGTATGAGATTGTTCGTGGGAAAGCCCTTCCAACAGTTTGGAATTCTTTCCAAACCAAGCTTTTTGTAAGTCTATTTTTTTTTTTTTTCTTTTCTTGGATTTCTTTAGTTCTTTTCTATTTGCAATGTAAAAAATAGCTTAAATTAAACGATAAAAGACACTATAATATCCTTTAAAATTATATGATTTCTAGTTTTTTTAATATTACTTTTAAAAGATAATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAACCAATAAGATAGATGGACCTCACAGCTCCGAGAAAAAGCACAACAAAGATAAACCAACTATCCAAAATAATCAAACTACAAAATGACCACACAACCACAGACTAAAACCCCTATTACCAAAATATCTCCAACCTAATTTTTATTCATACTTGTGGTGAAAGGTATGTAACTATGAGCAAGAATAATGAACTAGGATACAAGCTCACTTCTTAGGTTAACCTATCATGCAAAGGCCATACACGAGTGTCATGCCAGCCCTTAGCTACACAGCCAAACCCAAAAAGGAGGAGTCCCTCAACTAGCGTTTAGAAAGAAAAATAGACCAAAAAGACCCCATAACCCGAGGACAAAGCACAAACTCATAAAAACAAACAAACAACGAACCCAAAAACCAAATGGAAGAACACATCCAACAAATGAATCCAAAATAAAGATCCTATAGCCTAGAGACCGAGCACAAACCAAACAAACAAATAAAATTAACACAATAATCATCCTAGCAATTATTGAACTAAAAAAAACTTTATGAATTATAATTTATATTGAATTAGTAATTTTTTATCATCTCAAAAGTTGATAGTTTTATTGATCTCTTACGTTATTTGTTGAACAAAAAAAAATTGTGAGTTCTAATTATATTCACTATGTAATTCTTTAAAATATTACTAATTTTGTAAATTTTGTGGGTAAGTATGAACTTAAATTATTTCAATGCCCCCACACTTGGTTTAAAGATATTTTCCATTGTCGAGATGTGTTATCAATTCATTGAATTGCATATTTGGAAGTCTCTAAATTGCAATAGTTAGTCCAAAATATTACAAAATTCAAAATTTTGCACTTGTTTTATTTAGGACATTATCAAATTTTGTGGTTCGAAGTCTCATGAAGCTAAAATTAACATAATTGAAGATGTGAGTGGTGTCATAAAGCCCGGAAGGTAA ATGGCTCCAACCACGGAGGAGAGGGAGCCGGTCGGAATTGAACTGCCGGAGATCGGAAGAATAAGAAGCTTTAGTTTGTCATTCCGCCAACAGAATTCGAGTTTTCGAAGCAACTCAGCTGCAGCGGTAGTGGACGAGGACGAGAGGGATACTGTAGATGCTTCTCTTTGGGCAGCGGTCGAGAGATTACCGACGCTTGAACGGTTGAGATCATCGTTGTTCGACGATATTGGAGGAGTAGAAGTTGAGGAGAAAGGTAATTGTGGTAGGGTTGGTGTGAAATTTCCAACCGTGGAAGTGAAATACAAAAATGTGCATATTGAGGCAGAGTATGAGATTGTTCGTGGGAAAGCCCTTCCAACAGTTTGGAATTCTTTCCAAACCAAGCTTTTTGACATTATCAAATTTTGTGGTTCGAAGTCTCATGAAGCTAAAATTAACATAATTGAAGATGTGAGTGGTGTCATAAAGCCCGGAAGGTAA ATGGCTCCAACCACGGAGGAGAGGGAGCCGGTCGGAATTGAACTGCCGGAGATCGGAAGAATAAGAAGCTTTAGTTTGTCATTCCGCCAACAGAATTCGAGTTTTCGAAGCAACTCAGCTGCAGCGGTAGTGGACGAGGACGAGAGGGATACTGTAGATGCTTCTCTTTGGGCAGCGGTCGAGAGATTACCGACGCTTGAACGGTTGAGATCATCGTTGTTCGACGATATTGGAGGAGTAGAAGTTGAGGAGAAAGGTAATTGTGGTAGGGTTGGTGTGAAATTTCCAACCGTGGAAGTGAAATACAAAAATGTGCATATTGAGGCAGAGTATGAGATTGTTCGTGGGAAAGCCCTTCCAACAGTTTGGAATTCTTTCCAAACCAAGCTTTTTGACATTATCAAATTTTGTGGTTCGAAGTCTCATGAAGCTAAAATTAACATAATTGAAGATGTGAGTGGTGTCATAAAGCCCGGAAGGTAA MAPTTEEREPVGIELPEIGRIRSFSLSFRQQNSSFRSNSAAAVVDEDERDTVDASLWAAVERLPTLERLRSSLFDDIGGVEVEEKGNCGRVGVKFPTVEVKYKNVHIEAEYEIVRGKALPTVWNSFQTKLFDIIKFCGSKSHEAKINIIEDVSGVIKPGR Homology
BLAST of Lsi11G000030 vs. ExPASy Swiss-Prot
Match: Q9LFH0 (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=1 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 5.6e-30 Identity = 78/197 (39.59%), Postives = 112/197 (56.85%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy Swiss-Prot
Match: Q5W274 (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 7.3e-30 Identity = 81/195 (41.54%), Postives = 108/195 (55.38%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy Swiss-Prot
Match: Q9ZUT8 (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22 Identity = 62/166 (37.35%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy Swiss-Prot
Match: B9GDE5 (ABC transporter G family member 50 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG50 PE=2 SV=2) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16 Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy Swiss-Prot
Match: Q2QV81 (ABC transporter G family member 49 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG49 PE=2 SV=3) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14 Identity = 49/148 (33.11%), Postives = 79/148 (53.38%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy TrEMBL
Match: A0A1S3C5F9 (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like OS=Cucumis melo OX=3656 GN=LOC103496678 PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 8.0e-56 Identity = 124/196 (63.27%), Postives = 138/196 (70.41%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy TrEMBL
Match: A0A0A0KMI3 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G292220 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55 Identity = 121/194 (62.37%), Postives = 135/194 (69.59%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy TrEMBL
Match: A0A6J1DJT5 (pleiotropic drug resistance protein 3-like OS=Momordica charantia OX=3673 GN=LOC111021552 PE=3 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 8.0e-48 Identity = 118/200 (59.00%), Postives = 133/200 (66.50%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy TrEMBL
Match: A0A1S3B6X0 (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40 Identity = 107/194 (55.15%), Postives = 124/194 (63.92%), Query Frame = 0
BLAST of Lsi11G000030 vs. ExPASy TrEMBL
Match: A0A6J1DL52 (pleiotropic drug resistance protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021539 PE=3 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37 Identity = 91/185 (49.19%), Postives = 113/185 (61.08%), Query Frame = 0
BLAST of Lsi11G000030 vs. NCBI nr
Match: XP_038892176.1 (pleiotropic drug resistance protein 3-like [Benincasa hispida]) HSP 1 Score: 237.7 bits (605), Expect = 7.2e-59 Identity = 131/200 (65.50%), Postives = 141/200 (70.50%), Query Frame = 0
BLAST of Lsi11G000030 vs. NCBI nr
Match: XP_008456863.1 (PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like [Cucumis melo]) HSP 1 Score: 226.5 bits (576), Expect = 1.7e-55 Identity = 124/196 (63.27%), Postives = 138/196 (70.41%), Query Frame = 0
BLAST of Lsi11G000030 vs. NCBI nr
Match: XP_031741892.1 (pleiotropic drug resistance protein 3 isoform X2 [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55 Identity = 121/194 (62.37%), Postives = 135/194 (69.59%), Query Frame = 0
BLAST of Lsi11G000030 vs. NCBI nr
Match: XP_031745924.1 (ABC transporter G family member 37-like [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55 Identity = 121/194 (62.37%), Postives = 135/194 (69.59%), Query Frame = 0
BLAST of Lsi11G000030 vs. NCBI nr
Match: XP_004140460.1 (pleiotropic drug resistance protein 3 isoform X1 [Cucumis sativus] >KGN50690.2 hypothetical protein Csa_004732 [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55 Identity = 121/194 (62.37%), Postives = 135/194 (69.59%), Query Frame = 0
BLAST of Lsi11G000030 vs. TAIR 10
Match: AT3G53480.1 (pleiotropic drug resistance 9 ) HSP 1 Score: 132.1 bits (331), Expect = 3.9e-31 Identity = 78/197 (39.59%), Postives = 112/197 (56.85%), Query Frame = 0
BLAST of Lsi11G000030 vs. TAIR 10
Match: AT2G37280.1 (pleiotropic drug resistance 5 ) HSP 1 Score: 105.9 bits (263), Expect = 3.0e-23 Identity = 62/166 (37.35%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Lsi11G000030 vs. TAIR 10
Match: AT4G15230.1 (pleiotropic drug resistance 2 ) HSP 1 Score: 79.0 bits (193), Expect = 4.0e-15 Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = 0
BLAST of Lsi11G000030 vs. TAIR 10
Match: AT4G15215.1 (pleiotropic drug resistance 13 ) HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14 Identity = 42/125 (33.60%), Postives = 70/125 (56.00%), Query Frame = 0
BLAST of Lsi11G000030 vs. TAIR 10
Match: AT1G15520.1 (pleiotropic drug resistance 12 ) HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12 Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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