Lsi10G012040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G012040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr10: 16335324 .. 16339311 (-)
RNA-Seq Expression	Lsi10G012040
Synteny	Lsi10G012040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACATTACCTCTATTTTACTCTTCAATCTGCTCAGGGCTCTGTCTCTAACCTGCGTGATTTCTCAGTTCAACTATGGCAAACCCAATGAAGAGATGATATATATATATGATTGCAAGAAGAAGACTGTTTCGGGTCACATACCTCTGTATTTTGGAAGGCGATCCTCCAATCATATGCAGCCATGTGCAAGTTCTTTCCATCATAACCAATTTTAGCCAGATTTTCAATGAGAACAGCCCAAACGAAGTAGCCTTGGGCGAAATAATCAGCAGCCACAAGGCCTTCAACTGGCCGGACCCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCTAGAGACAGGTGCTCCAACCAGCATAGTGGTCTGAAAATTTGAATTCAAATTTTCAAATGGGTACTTCCAAAATCAATTCAAAAGCTTCAGAAATGTCAAATTGATCTGGAATTTGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAAGAGGCCCTCGGCGCAGGGCTTGCCGTCCCAGAGCTCCAGCCCGCCGGTGACAATTCCAGGCACTAAAACGACTGGGTGAAGACCTGATATGCCTTCTCGCTTTAGAACAGCTCCCGGAGAATCAATCGCCCGAAAGCCAGGTAGTGTAAGAGGCAAATAATGGTAGAGAAAAAACATCAGCCACCAAAATGTACACATGTATCCAATAATCCAACAGCAGTTATCTAAGCATTTCCATTCTCCTGATTGCCCCTTCTTGATGTTCTTGTTCCTTTTCTTCTTCTTGTCCTTGTCTTGCTTCATTTGCATCAATTTCTTCACATATGCGACAATGACATTATGTTTATCCTCTGATTTATGTGCTTCAATGGGTTGAACCCCCATAGAAGAGCTCTTAACAGGGTTGACGAAGTATAATTTGCGGAGACGAAGAACAGAGGCCATTGATTAAGGAGTGAAGAAGTTGAAATCAAGAAAATTAAAGAAGAATGAGGAGAACCCATGAGTCATGGGGGATTTTAAAACAGAAAAAATATTTTAAAAACTTGAAGGAGCTGTCAAGAAGGCAATACACGTGGTGAAATGAAAAGGAGAAGAGAGAGTAAATGGCCTGGTGGCCATGGATGGCTGAAGGTGTGCAGTAGGAAAAAAACAGGGGATGTGAAAAGGAAAGAGAAAAAGAAGGGCTTCTGTTCTTCAACCCACAATGAGAAAGAAAAACGAAATGCTTTCTGCAAATTGATGAGGAAATGGGAATGGAGAATCCAAAGTAACACATTTTGTTTGATCAAAATGACACTTGGCTCTGTTTCTGCATGGGCGCTTCATCAGGTGTCATCCCCTCTGGACCTCTCTGTCTGTCTTGACTGCAAAATGCAAATTACAACTTGTGAGTAACACTCTTTTCCTTCATATTTTCTCATATTCTCTTATTTTCTTTTTATGTAAAGGAAACATTTTCGGAAGCATGAGATTTAGGTCCACCTAATTATTGGCCTGTCGTAAATGTGTTAAAAAATAACTAAAATTCTTTCTCTAAATATAAATCTCCAAAATATAATATTTAATGAGATGCTTACACCTCCTTCAATTATTAATAAAATATTATATAGCACGTAGTTTTATTTCAAAATGAATAAACAATAAGATGAATATCTAATTTATCTTATAAGGAGTTTAAAGTTTTTAATTTTTTAACGTGGGATCGTGAACTATATGAAATCTACTAATATTTATAAAGACAAAACTATTGTATAAATAAAAAGAATTATAACATTTCTCTAGTACTAAAACTTTGTGATCAGATTAGATTGAAATGTACACAGATTTGTACATTTTAAAAATACATCTAAGTGTTATTCATATTATATTTGATAGAGATAGCTCAATAATTAAAGCTTTATGTTTTCGAAAAAAAACTGAGCACACACGATTTGACTAGAACTGTCACACTTGGGCACTGTGGGCGTTAAAAGATATAAAGCTAACAGAGCGGAATAAAGGGTTAGTTTCTCAATTTGTGTGCCTTTTTTTTTTTGTTTGTTTGTTTGGTTTGCTGTGATTTCTTTCTTTTGGGGATGCGTACTCTTCTGACTTTGTTAAGTTACACACTACTTATACACCATGCCGGTAAATATTTTGTACCTGATGGATAGAAAAATAGTTGGTGTATGTCGATAGAACCTATTTTTATGCCTCTCATTAAATTGTTAAATCATATTTTGATATGTGACAAATTCTTTTATTTATTTTTTATAATATTTTGATTATTTTTTGATATAAATGATAATAGTGGGATGCATAGAGATGAGTGCATCTTTATGCATTTTAAGATGCACCCAAGTATTGCCCACACACATACACACATATATACTAATTGAGAAACACGTAATACATGTGAAATCTCCTAGTTCTAGTTATTATTTTTTAAATAGTGATTTTTAGTATGTAATAAATAAAAAAATATTAGGTAGTTTTCAAATATAGAAAAATGAATCAAAATATTTATGAATATAGCAAAATTTTACAGTTTATCTACGATAGACTACTATCTGTGTCTATCTGTAGTCTATCACGACATAGATAGTAGTCTATCGCAGATAGACAATGAAATTTTACTATATTTGTAGATATTTTCAGCAGTTTTGTCATTTAAAATAATTTTCTTAAATATTATACAATTTTGTTTTAGTTACCATCAACTTTTAAAAGTTAGATAATGCAACATTTTTATCTTAATGTTCTTATATTATAGTTTTTTTTAAAAAAAAAAATATCTTATGATCTAGTACAAAGAGAGAAATTGTTCTAATAATTAGATTATCCAATTAAGATGTTAATATTCCAATATTGTAATATATATAATGCAATAATTTTTATTCTCATGTTATAATATATCTATAGTTAAGTCACATGAAATGATGCATTGTTTCACCTTTTTAAATACTACTTTCATTCATTAAATCTTCTAATTTTTCTTTTTTCTTTTTTTTTTGTATTTTCTCTAAATTTTGGATCTCACAAAGTATTGTAATATATAATGCAATAATTTTTATTCCATGTTATAATATATCTATAGTTAAGTCACATGGAATGATGCATTGTTTCACCTTTTTACATACTACTTTCATTCATTAAATCTTCTAATTTTTCTTTTTTCTTTTTTTTTGTATTTTCTCTAAATTTTGGATCTCACAAAGTATTGTAATATATAATGCAATAATTTTTATTCCATGTTATAATATATCTATAGTTAAGTCACATGAAATGATGCATTGTTTCACCTTTTTACATACTACTTTCATTCATTAAATCTTCTATTATTTTATTTTTTTTTTTTTGTATTTTCTCTAAATTTTGGATCTCATAAAATTGTTTTTTTAAGAATGTAAATGCAAGTATTCATTTTGTTTTTCTTTTACACTTGCATCTCACATATACATTGAAAAAATCAATGTACCAATTTTACGTGTAACCACCTCTACCTTGAATAGATGCATCCAATTGACATCTATTGCATCCTAACTCGAAGAGTCGCATTCTGTCAATATCATTTGCACCTATTCGACCTAAGACTTTATTTTTTAATCTAAAAATTGGAAAAGGCACCTACATTGTCTTTCAAACATACACCTACAGTTGAAAAGTCACAAGCACTCAACGAAAGGGTAATACGGGAATTTATGAAAAATGTAAAGGTAAAAAGAGCATGTAAAGATTCTTCCTACATAGCTAATATATAAATTTAACCTTCACTGTCTTTCAAACGGACATCCACACTCAAAAAATCATAACCACTCGACAAAGGATAAAAGGGCAGGTAAAGATTCTCCCAGCCAATCCCTTTTAACATAGTAGAGATATATATACAATTCAATCTCTACTCTCGAAATCCACCATACAAGTTTTATATGTTAATTACTAATATATATTTTTTAATGTTTGATAGACTATTTTTCAACGTTCGATAAACTCTATTTTTTAG

mRNA sequence

CATACATTACCTCTATTTTACTCTTCAATCTGCTCAGGGCTCTGTCTCTAACCTGCGTGATTTCTCAGTTCAACTATGGCAAACCCAATGAAGAGATGATATATATATATGATTGCAAGAAGAAGACTGTTTCGGGTCACATACCTCTGTATTTTGGAAGGCGATCCTCCAATCATATGCAGCCATGTGCAAGTTCTTTCCATCATAACCAATTTTAGCCAGATTTTCAATGAGAACAGCCCAAACGAAGTAGCCTTGGGCGAAATAATCAGCAGCCACAAGGCCTTCAACTGGCCGGACCCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCTAGAGACAGGTGCTCCAACCAGCATAGTGGTCTGAAAATTTGAATTCAAATTTTCAAATGGTGAAACTCCCACCCCACAGGCGCTTTCGAAAGAGGCCCTCGGCGCAGGGCTTGCCGTCCCAGAGCTCCAGCCCGCCGGTGACAATTCCAGGCACTAAAACGACTGGGAGCTGTCAAGAAGGCAATACACGTGGTGAAATGAAAAGGAGAAGAGAGAGTAAATGGCCTGGTGGCCATGGATGGCTGAAGGTGTGCAGTAGGAAAAAAACAGGGGATGTGAAAAGGAAAGAGAAAAAGAAGGGCTTCTGTTCTTCAACCCACAATGAGAAAGAAAAACGAAATGCTTTCTGCAAATTGATGAGGAAATGGGAATGGAGAATCCAAAGTAACACATTTTGTTTGATCAAAATGACACTTGGCTCTGTTTCTGCATGGGCGCTTCATCAGACTATTTTTCAACGTTCGATAAACTCTATTTTTTAG

Coding sequence (CDS)

ATGGTGAAACTCCCACCCCACAGGCGCTTTCGAAAGAGGCCCTCGGCGCAGGGCTTGCCGTCCCAGAGCTCCAGCCCGCCGGTGACAATTCCAGGCACTAAAACGACTGGGAGCTGTCAAGAAGGCAATACACGTGGTGAAATGAAAAGGAGAAGAGAGAGTAAATGGCCTGGTGGCCATGGATGGCTGAAGGTGTGCAGTAGGAAAAAAACAGGGGATGTGAAAAGGAAAGAGAAAAAGAAGGGCTTCTGTTCTTCAACCCACAATGAGAAAGAAAAACGAAATGCTTTCTGCAAATTGATGAGGAAATGGGAATGGAGAATCCAAAGTAACACATTTTGTTTGATCAAAATGACACTTGGCTCTGTTTCTGCATGGGCGCTTCATCAGACTATTTTTCAACGTTCGATAAACTCTATTTTTTAG

Protein sequence

MVKLPPHRRFRKRPSAQGLPSQSSSPPVTIPGTKTTGSCQEGNTRGEMKRRRESKWPGGHGWLKVCSRKKTGDVKRKEKKKGFCSSTHNEKEKRNAFCKLMRKWEWRIQSNTFCLIKMTLGSVSAWALHQTIFQRSINSIF

Homology

[Close]

BLAST of Lsi10G012040 vs. NCBI nr
Match: KAG7010680.1 (hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 2  VKLPPHRRFRKRPSAQGLPSQSSSPPVTIPGTKTTG 38
          VKLPPHRRFR  P AQGLPSQSSSPPVT+PGTKTTG
Sbjct: 27 VKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTG 62

The following BLAST results are available for this feature:

BLAST of Lsi10G012040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G012040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010680.1	1.5e-07	88.89	hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi10G012040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G012040.1	Lsi10G012040.1	mRNA