Lsi10G008520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ferroxidase
Location	chr10: 12529589 .. 12533894 (-)
RNA-Seq Expression	Lsi10G008520
Synteny	Lsi10G008520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGCATGCTCTGCAGTTTGAACTTGAAGCCGGTGGGTGCAACGATGGCTACCAAACTGCTTTACCTGCGTAAGCTTTCAAGGATACTGAAACTGCCATCTTCTTCTTCTTCCTCTTTCAGGAAGTGTTCATATCTTCTTGAAGCTTCAAGACCTCTCCTCGATCTTTCCAATAATGTTAAAAAATTTCATCCTCCGTCTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCCACCATTGATTATAGGTAATTTGTTCCTTTCTTTTCCTTCATTTTCTTGTTTTTTAATCTTATTGTAAGAGAAACTGTGTATTTGATTCCAAATCTTGTAGAAGAAATGGAAGTTGTAAGTTCCAGACCTTTTCCCCAAATTTTGTTTTAGCAATTTTGAAGCATTTTCAATTTGCTGATTGTTTTTGGTCTACTTGATTTATTTGCGAAAATGGCTTGTGTTCCTTCAATAAAGTGTTGTGGATGTCTTACCATCATTTCAATTTTCTTTGATTGTACAAATTAAAAATGCAATTGATGGGGTTTTCTTTGAGCTCCGATATAATAGTCGAATGTATTTGATAGAGAGGAGCTCAAGTGATCTTGGCTAATGTTTGCTGCAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGCCTAGCTGATTCCACAATACAGGGACTGCAAGAGAAATTAGAGGTAATTTTATATCATTGAAGTTTATTGTATCTTATAAGCCAAAGGTAACTAATAGCTTATATTTTTCGTTTACATAATTTGGAGTTGCTGTTGAAATTTTGTGAACTTTATTTCATTGCGTGCCAGGAATATGGCGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGGTGAGAATGACTAAGCAGTTCTAAAGTTGTTAAATTCATTTCATATGAATAGATGATGTTTAAATTTATCCGATTTTTATCAAGCAGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGGTATGAATTATGCTTCACGAATGATTAGAATATTGTTTATCCTTTCCATTTGCTTCAAAGCTCATTTCAGACCTTGTGTTTCCATTTCATAGCGAAGTCCAGTGCTCGTCTTTTTAATGACTTAGTAAAAAATCGAATTTGTTTTGTCCATATAACATTTACCCATTGATATGAGCATGCCTCATATTTCCTAAGTGTCTTTTAACTTATATTAGCGTTAAAAAGACACCTTGATCATATCCTTAGAAGTTGTGATTTCGCTTGGGTTGGTGTGGTTTTTTTTCAAGGTGTTTGGCTTTAGTTTCACCAATTCTTAGGGTGTAGAGAGACGATTGAGGAGTTGCTCCTCCATCTGCCTTTTCATGAGAAAGGTTTGTTTTTTGAGTAGGGTATGGTGTGTGCTATTTTGTGGGGTGGGGAAACAATAGAATCTTTAGGGGGTGGGAAAGTTCCTTGGTCCACCATCGATGTGTTAGGCGACCAATCCTATTTCTTTGACCATCTTAGCGTTCCCCACATTTGCTGCAATGGGTTCTTCTGCAAGCCATTGCAGCTAGGGATCAATGAGTAGAGAGTAAGGGATTTCTTTTGTTAGGGAGGGGTATTTAAATAGTTGTTTGTAGGCTTGAGAGGTTAGGTTGTTTTTGAAGTAATTCTCGAGAGAGAGAACAGTAAAGTTGTGTAATCGCCTTCGGGTATTTTGTTTTTGAATATCAATACCATAGTAAGGGAATACCTTAGACATTGGTATCAAAGCACTCAATATGGAGAGATTAGGCAAAATAGTGCAGAAGAAAATTGAAGAACGTCCAGATGTTACAGATCGAGAACATGGAAAATTAAGAAGGAAATGAAACAGATACTTGTGATTGAAGAGATGCTTGCAATGTTGGCAAAGAGCGTGGAAAGCTTAATGTGCAAATGAAAAAGCAACATTGAAGTTCTGATAAGACTCAAAAACTTCTGATGCCAATGGTCACGAATCGCTCCACAAGGTCAACACTCGCAGAAGAATCGAGTGGTGTTGTGAGGTCGATGGAAAAAATAGGTGAATCGCCAACATTGGTCATAGAAATTTTGTGCACGGACAATAGAGGGAAGGGTGAGGATGGCAGCTGTGATCGAAAAGTTCAAGAAGGTTGAAATGCCGGTGTTCAATGGAAATGACCTTGATTCTTGGTTGTTTAGAGCTGATCATTACTTCCAAATCCATAAGTTGACGGCATCAGAGAAGAAGACCATGGTGGTGATTGGTTTTGAAGGTGTAGCGTTGGATTGGTATCAAGCGAAAGAAGAATGCGAGCTGTTCAAGGATTGGGAAGAGCATAAGAAGATGCGTTTGCTAGAGCGGTTTAGATCCATCTCTGAAGGGGACATTGTGTGGTCAACTTCTAGCGATCAAACTAGAAACAATGGTGGAGGCCTGTCAGAACTTATTTGATAAATTGGTGGCCGCACTGTCTCAATTGACAGACGAGGTATTAGAAAATACATTCATGAACGGGCTAGAACCATGAATCAAGGCTAAAGTTGAACGTTGGGAACCCATTGGGGTGGCTAGTATGATGTCTAGATCAATTAGTTGAGAATTGCGTACTGACCTGTTCAGAGGCAGGCCTCAGTGGCCTAATGGGAGCTAAGGCCCAAACCCCTATTTCTAAAGTGATTATTCCATCTTCAGGGAAGAAAACGGTGAAAGGCTATTTAAATTCAAGATTCTTTAACATTTTGCTCTTTCTATTAGTATGGTTGGAAAGAACACAAAATAAACATATGAAAACGTGTGATCATTAACCTATGAAAACAAAAAAACACAAAAGGACATGCATACTTTTTTGTTGCGCAATTGTGTGATTGCTCTCATTGTGCGATTTTGTTTTGGTCATAGCTCCATCGATGACTCGATACAACTTCATTTTAGCTAAATGACTACTTGTTTTCATACTTTTTTTGTGTTCTTTCCAACCGTGCTGATAAATTTAGCAAAATGTTAAAGCATCTTGACTTTTAAATGACCTTATAAAGTTTAAAATTAGATCATTTCTGGTATTTGATGTTTTGGTAATATAAGGGTAAAATGATAATTTCACTCCTCAAAAAGGTCAAAAATATGTTTTTTTTATTATTTTAAAAATGTCATTTGTATAGGTTTTTGAGTTTTGGGTCATTTTGAGCCGTTTTCTAGAGAAGAGAGGAGTTGTGTAATTGCCTCGGGACATGTTATTCTTGAATATCAATACCATAGCAAGGGAAATACCTTACACAATGTTTGATCTCTTGTAAGATTCTCTGGTTCTCTCTAGGCCTTAGTTTCTAGACTTTGTTGTAATTAATCTCTAGGTGCCTTTTACTTGATTAGAGCCCCTTTTGGTTGTTGGCTCTCCTTTTTGTGGTGTATGTCTATGTATTCTTTCATCTTTTCTCAATGAAAGTAACTTTTCATTATTGTTATTATTAGTTTTTTTTTTTAAAAAACTTAAAACTTAAAACTTATATTAAAGCAGAAAAAAATGGATGGGACTAAATTAGTCCTGAGACAACGTAAACCTCAAACATTGGTTGGTTATTTATATACTTAAGGCATTGTACACAACTTTATGACACCCTATAATATAGTGTAGCTCATTTTTTGTGGGCTTTGTTTGTGTATGCTCTTGTATTCTTTTATTGTTTCTTGATGAAAGTTTAGATTCTTTTTTAGAAAACGAAACTCTGTGACAACCCAGGTTATGTACTATCTTGCAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAGCCTGTTGAGCCTTTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGATCTTTCTTGAGCCGTTTCAAATAACTGGGGCAGGTTAACTGAATCACTTAGACGCATATTTATGTAGCTCGTTCAGTTTGGTTCACGTTCTTAATTATGACCAGAGCTCCATTTTTCTTATTTTCGTTCTACCTGTTCCATATTATATCATGTTCTAATTTCTAGTGTTTCAACTATATCATTTAATAATTAACCTATACTTAACCGATCGTAGATCAATTACTCATGATATAAAACACTCTTTTGAAATGTCAGAAATTTAAGTTACCACCCTTGGTTAGAACTCAAATTTCTGTATGTGTATGGATATATACACGGTATTACAATCTATGAGAATTTGGGTGAAGGGAGTAGTTATGTTATTCAA

mRNA sequence

CGAGCATGCTCTGCAGTTTGAACTTGAAGCCGGTGGGTGCAACGATGGCTACCAAACTGCTTTACCTGCGTAAGCTTTCAAGGATACTGAAACTGCCATCTTCTTCTTCTTCCTCTTTCAGGAAGTGTTCATATCTTCTTGAAGCTTCAAGACCTCTCCTCGATCTTTCCAATAATGTTAAAAAATTTCATCCTCCGTCTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCCACCATTGATTATAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGCCTAGCTGATTCCACAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGCGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAGCCTGTTGAGCCTTTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGATCTTTCTTGAGCCGTTTCAAATAACTGGGGCAGGTTAACTGAATCACTTAGACGCATATTTATGTAGCTCGTTCAGTTTGGTTCACGTTCTTAATTATGACCAGAGCTCCATTTTTCTTATTTTCGTTCTACCTGTTCCATATTATATCATGTTCTAATTTCTAGTGTTTCAACTATATCATTTAATAATTAACCTATACTTAACCGATCGTAGATCAATTACTCATGATATAAAACACTCTTTTGAAATGTCAGAAATTTAAGTTACCACCCTTGGTTAGAACTCAAATTTCTGTATGTGTATGGATATATACACGGTATTACAATCTATGAGAATTTGGGTGAAGGGAGTAGTTATGTTATTCAA

Coding sequence (CDS)

ATGCTCTGCAGTTTGAACTTGAAGCCGGTGGGTGCAACGATGGCTACCAAACTGCTTTACCTGCGTAAGCTTTCAAGGATACTGAAACTGCCATCTTCTTCTTCTTCCTCTTTCAGGAAGTGTTCATATCTTCTTGAAGCTTCAAGACCTCTCCTCGATCTTTCCAATAATGTTAAAAAATTTCATCCTCCGTCTTTTTCTCGAAGCTTCTGCTCCCGCCCTCTGGATTTCGTCGGCGATGATTCTCGAGGCCCTGCCACCATTGATTATAGTTCTCTGATGCAGGAGGGAGAGTTTCATAGCCTAGCTGATTCCACAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGCGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAGCCTGTTGAGCCTTTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGATCTTTCTTGA

Protein sequence

MLCSLNLKPVGATMATKLLYLRKLSRILKLPSSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRSFCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETELAQLCGEPIDLS

Homology

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BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot
Match: Q9ZR07 (Frataxin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FH PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-51
Identity = 109/191 (57.07%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 21  LRKLSRILKLPSS--SSSSFRKCSYLLEASRPLLD----LSNNVKKFHPPSFSRSFCSRP 80
           LRKL R LKL  +   S+  R  S L++ S   LD    + + ++  H    +RSF    
Sbjct: 9   LRKLPRFLKLSPTLLRSNGVRVSSNLIQDSIEPLDSFWRIGSRIR--HDSLTTRSF---- 68

Query: 81  LDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNEV 140
                  S+GPA++DYSS++QE EFH LA+ TI  L EK+E+YGDN+QIDGFD+DYGNEV
Sbjct: 69  ------SSQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEV 128

Query: 141 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETEL 200
           LTL+LG+LGTYVLNKQTPNRQIW+SSP+SGPSRFDWD+++  WIYRR +A L  LLE EL
Sbjct: 129 LTLKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEEL 187

Query: 201 AQLCGEPIDLS 206
             LCGEPI LS
Sbjct: 189 ENLCGEPIQLS 187

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BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot
Match: O35943 (Frataxin, mitochondrial OS=Mus musculus OX=10090 GN=Fxn PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 83  RGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 142
           R   T+D  S + E  +  LA+ T+  L E  E+  D    ++ +DV +G+ VLT++L G
Sbjct: 76  RNLGTLDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTIKLGG 135

Query: 143 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETELAQLCGE 202
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  SL  LL  EL +    
Sbjct: 136 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLARELTKALNT 195

Query: 203 PIDLS 206
            +DLS
Sbjct: 196 KLDLS 198

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BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot
Match: Q05B87 (Frataxin, mitochondrial OS=Bos taurus OX=9913 GN=FXN PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 83  RGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 142
           R   T+  +  + +  +  LA+ T+  L E  E+  D     + +DV +G+ VLT++L G
Sbjct: 80  RTAGTLGDAGTLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGG 139

Query: 143 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETELAQLCGE 202
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  SL  LL TEL Q    
Sbjct: 140 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGRNWVYSHDGVSLHELLATELTQALKT 199

Query: 203 PIDLS 206
            +DLS
Sbjct: 200 KLDLS 202

[Close]

BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot
Match: Q16595 (Frataxin, mitochondrial OS=Homo sapiens OX=9606 GN=FXN PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-21
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 83  RGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 142
           R   T+ +   + E  +  LA+ T+  L E  E+  D     + +DV +G+ VLT++L G
Sbjct: 79  RKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGG 138

Query: 143 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETELAQLCGE 202
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  SL  LL  EL +    
Sbjct: 139 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKT 198

Query: 203 PIDLS 206
            +DLS
Sbjct: 199 KLDLS 201

[Close]

BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot
Match: Q54C45 (Frataxin, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=fxn PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-20
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 99  FHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWL 158
           FH + D   +   ++LE   +    +GF+V+  + VLT+ +GN GTYV+NKQTPNRQIW 
Sbjct: 88  FHDIVDEEFELFVDRLEILSEANTCEGFEVEGNDGVLTIIVGNKGTYVINKQTPNRQIWW 147

Query: 159 SSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETELAQLC 199
           SSPLSGP RFD+D   + W+  R+   L  LL +E+  LC
Sbjct: 148 SSPLSGPKRFDYDSVEKRWVDNRDGTPLRQLLNSEINTLC 187

[Close]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL
Match: A0A0A0KAC6 (Ferroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G121430 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92
Identity = 178/205 (86.83%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MLCSLNLKPVGATMATKLLYLRKLSRILKLPSSSSSSFRKCSYLLEASRPLLDLSNNVKK 60
           +L SLN KPV   MA KLL LRKLSRILKLPS SS SFRK  +LLEAS PL+ + NNV +
Sbjct: 20  VLRSLNFKPVDVAMA-KLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQ 79

Query: 61  FHPPSFSRSFCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDN 120
           FHPPSF RSFCSRPLD VGDDSRGPATIDYSSLMQEGEFH LAD  IQGLQEKLEEYGDN
Sbjct: 80  FHPPSFLRSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDN 139

Query: 121 LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR 180
           LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR
Sbjct: 140 LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR 199

Query: 181 RNKASLLSLLETELAQLCGEPIDLS 206
           RNKA+LLSLLETEL QLCGEPIDLS
Sbjct: 200 RNKANLLSLLETELTQLCGEPIDLS 223

[Close]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL
Match: A0A1S3BJ48 (Ferroxidase OS=Cucumis melo OX=3656 GN=LOC103490464 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.2e-91
Identity = 172/192 (89.58%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLPSSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRSFCSR 73
           MATKLL L KLSRILKLPSSSS SFRKC YLLEAS PL+ +SNNV +F PPSFS+SFCSR
Sbjct: 1   MATKLLPLHKLSRILKLPSSSSCSFRKCPYLLEASIPLIHISNNVHQFQPPSFSQSFCSR 60

Query: 74  PLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNE 133
           PLD VGDDSRGPATIDYSSLMQEGEFH LAD TIQGLQEKLEEYGDNLQIDGFDVDYGNE
Sbjct: 61  PLDIVGDDSRGPATIDYSSLMQEGEFHRLADFTIQGLQEKLEEYGDNLQIDGFDVDYGNE 120

Query: 134 VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETE 193
           VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNS+ WIYRRNKA+LLSLLETE
Sbjct: 121 VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSRAWIYRRNKANLLSLLETE 180

Query: 194 LAQLCGEPIDLS 206
           L QLCGEPI+LS
Sbjct: 181 LMQLCGEPINLS 192

[Close]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL
Match: A0A6J1I2E7 (Ferroxidase OS=Cucurbita maxima OX=3661 GN=LOC111469879 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 173/196 (88.27%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLP----SSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRS 73
           MATKLL LRKLSRILK+P    SSSSSSFRK SYLLE +RPLLDLS+NV +FHPPSFSRS
Sbjct: 1   MATKLLPLRKLSRILKVPSFLSSSSSSSFRKYSYLLEPTRPLLDLSDNVHQFHPPSFSRS 60

Query: 74  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVD 133
           FCSRPLDFVGDDSRGPATIDYSSLMQEGEFH L DSTI GLQEKLEEYGD+LQIDGFDVD
Sbjct: 61  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHRLVDSTIHGLQEKLEEYGDDLQIDGFDVD 120

Query: 134 YGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSL 193
           YGNEVLTLRLG+LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ+SQ WIYRRNKA+LL L
Sbjct: 121 YGNEVLTLRLGDLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDSQAWIYRRNKANLLRL 180

Query: 194 LETELAQLCGEPIDLS 206
           LETELAQLCGEPI+LS
Sbjct: 181 LETELAQLCGEPINLS 196

[Close]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL
Match: A0A6J1G6C8 (Ferroxidase OS=Cucurbita moschata OX=3662 GN=LOC111451278 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.7e-90
Identity = 172/196 (87.76%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLP----SSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRS 73
           MATKLL LRKLSRILK+P    SSSSSSFRK SYLLE++RPLLDLS+NV +FHPPSFSRS
Sbjct: 1   MATKLLPLRKLSRILKVPSFLSSSSSSSFRKYSYLLESTRPLLDLSDNVHQFHPPSFSRS 60

Query: 74  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVD 133
           FCSRPLDFVGDDSRGPATIDYSSLMQEGEFH LADSTI GLQEKLEEYGD+LQIDGFDVD
Sbjct: 61  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHRLADSTIHGLQEKLEEYGDDLQIDGFDVD 120

Query: 134 YGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSL 193
           YGNEVLTLRLG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ+SQ WIYRR+KA+LL L
Sbjct: 121 YGNEVLTLRLGYLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDSQAWIYRRSKANLLRL 180

Query: 194 LETELAQLCGEPIDLS 206
           LETEL QLCGEPI+LS
Sbjct: 181 LETELTQLCGEPINLS 196

[Close]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL
Match: A0A6J1CG34 (Ferroxidase OS=Momordica charantia OX=3673 GN=LOC111011350 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.7e-88
Identity = 168/195 (86.15%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLPSSSSSS---FRKCSYLLEASRPLLDLSNNVKKFHPPSFSRSF 73
           MATKLL LRKLSRILK+PSSSS S   FR+ SYLLEASRPLL +S+NV +FHPPSFSRSF
Sbjct: 1   MATKLLPLRKLSRILKVPSSSSYSSPCFRRYSYLLEASRPLLGISDNVHQFHPPSFSRSF 60

Query: 74  CSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDY 133
           CSRPLDFV DDSRGPA+IDYSSLMQEG+FH LADSTI GLQEKLEEYGD+LQIDGFDVDY
Sbjct: 61  CSRPLDFVDDDSRGPASIDYSSLMQEGDFHRLADSTIHGLQEKLEEYGDDLQIDGFDVDY 120

Query: 134 GNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLL 193
           GNEVLTL+LG+LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQNSQ WIYRRNKA+LL LL
Sbjct: 121 GNEVLTLKLGDLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQNSQAWIYRRNKANLLRLL 180

Query: 194 ETELAQLCGEPIDLS 206
           ETELA+LCGEPI LS
Sbjct: 181 ETELAELCGEPIGLS 195

[Close]

BLAST of Lsi10G008520 vs. NCBI nr
Match: XP_004139965.2 (frataxin, mitochondrial [Cucumis sativus] >KGN46675.1 hypothetical protein Csa_020912 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 2.8e-92
Identity = 178/205 (86.83%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MLCSLNLKPVGATMATKLLYLRKLSRILKLPSSSSSSFRKCSYLLEASRPLLDLSNNVKK 60
           +L SLN KPV   MA KLL LRKLSRILKLPS SS SFRK  +LLEAS PL+ + NNV +
Sbjct: 20  VLRSLNFKPVDVAMA-KLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQ 79

Query: 61  FHPPSFSRSFCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDN 120
           FHPPSF RSFCSRPLD VGDDSRGPATIDYSSLMQEGEFH LAD  IQGLQEKLEEYGDN
Sbjct: 80  FHPPSFLRSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDN 139

Query: 121 LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR 180
           LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR
Sbjct: 140 LQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYR 199

Query: 181 RNKASLLSLLETELAQLCGEPIDLS 206
           RNKA+LLSLLETEL QLCGEPIDLS
Sbjct: 200 RNKANLLSLLETELTQLCGEPIDLS 223

[Close]

BLAST of Lsi10G008520 vs. NCBI nr
Match: XP_008448200.2 (PREDICTED: frataxin, mitochondrial [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 2.4e-91
Identity = 172/192 (89.58%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLPSSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRSFCSR 73
           MATKLL L KLSRILKLPSSSS SFRKC YLLEAS PL+ +SNNV +F PPSFS+SFCSR
Sbjct: 1   MATKLLPLHKLSRILKLPSSSSCSFRKCPYLLEASIPLIHISNNVHQFQPPSFSQSFCSR 60

Query: 74  PLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNE 133
           PLD VGDDSRGPATIDYSSLMQEGEFH LAD TIQGLQEKLEEYGDNLQIDGFDVDYGNE
Sbjct: 61  PLDIVGDDSRGPATIDYSSLMQEGEFHRLADFTIQGLQEKLEEYGDNLQIDGFDVDYGNE 120

Query: 134 VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETE 193
           VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNS+ WIYRRNKA+LLSLLETE
Sbjct: 121 VLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSRAWIYRRNKANLLSLLETE 180

Query: 194 LAQLCGEPIDLS 206
           L QLCGEPI+LS
Sbjct: 181 LMQLCGEPINLS 192

[Close]

BLAST of Lsi10G008520 vs. NCBI nr
Match: XP_022971111.1 (frataxin, mitochondrial [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 173/196 (88.27%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLP----SSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRS 73
           MATKLL LRKLSRILK+P    SSSSSSFRK SYLLE +RPLLDLS+NV +FHPPSFSRS
Sbjct: 1   MATKLLPLRKLSRILKVPSFLSSSSSSSFRKYSYLLEPTRPLLDLSDNVHQFHPPSFSRS 60

Query: 74  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVD 133
           FCSRPLDFVGDDSRGPATIDYSSLMQEGEFH L DSTI GLQEKLEEYGD+LQIDGFDVD
Sbjct: 61  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHRLVDSTIHGLQEKLEEYGDDLQIDGFDVD 120

Query: 134 YGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSL 193
           YGNEVLTLRLG+LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ+SQ WIYRRNKA+LL L
Sbjct: 121 YGNEVLTLRLGDLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDSQAWIYRRNKANLLRL 180

Query: 194 LETELAQLCGEPIDLS 206
           LETELAQLCGEPI+LS
Sbjct: 181 LETELAQLCGEPINLS 196

[Close]

BLAST of Lsi10G008520 vs. NCBI nr
Match: KAG6604827.1 (Frataxin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.8 bits (878), Expect = 2.0e-90
Identity = 173/197 (87.82%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 13  TMATKLLYLRKLSRILKLP----SSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSR 72
           TMATKLL LRKLSRILK+P    SSSSSSFRK SYLLE++RPLLDLS+NV +FHPPSFSR
Sbjct: 28  TMATKLLPLRKLSRILKVPSFLSSSSSSSFRKYSYLLESTRPLLDLSDNVHQFHPPSFSR 87

Query: 73  SFCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDV 132
           SFCSRPLDFVGDDSRGPATIDYSSLMQEGEFH LADSTI GLQEKLEEYGD+LQIDGFDV
Sbjct: 88  SFCSRPLDFVGDDSRGPATIDYSSLMQEGEFHRLADSTIHGLQEKLEEYGDDLQIDGFDV 147

Query: 133 DYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLS 192
           DYGNEVLTLRLG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ+SQ WIYRR+KA+LL 
Sbjct: 148 DYGNEVLTLRLGYLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDSQAWIYRRSKANLLR 207

Query: 193 LLETELAQLCGEPIDLS 206
           LLETEL QLCGEPI+LS
Sbjct: 208 LLETELTQLCGEPINLS 224

[Close]

BLAST of Lsi10G008520 vs. NCBI nr
Match: XP_022947402.1 (frataxin, mitochondrial [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 7.7e-90
Identity = 172/196 (87.76%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 14  MATKLLYLRKLSRILKLP----SSSSSSFRKCSYLLEASRPLLDLSNNVKKFHPPSFSRS 73
           MATKLL LRKLSRILK+P    SSSSSSFRK SYLLE++RPLLDLS+NV +FHPPSFSRS
Sbjct: 1   MATKLLPLRKLSRILKVPSFLSSSSSSSFRKYSYLLESTRPLLDLSDNVHQFHPPSFSRS 60

Query: 74  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVD 133
           FCSRPLDFVGDDSRGPATIDYSSLMQEGEFH LADSTI GLQEKLEEYGD+LQIDGFDVD
Sbjct: 61  FCSRPLDFVGDDSRGPATIDYSSLMQEGEFHRLADSTIHGLQEKLEEYGDDLQIDGFDVD 120

Query: 134 YGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSL 193
           YGNEVLTLRLG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ+SQ WIYRR+KA+LL L
Sbjct: 121 YGNEVLTLRLGYLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDSQAWIYRRSKANLLRL 180

Query: 194 LETELAQLCGEPIDLS 206
           LETEL QLCGEPI+LS
Sbjct: 181 LETELTQLCGEPINLS 196

[Close]

BLAST of Lsi10G008520 vs. TAIR 10
Match: AT4G03240.1 (frataxin homolog )

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-52
Identity = 109/191 (57.07%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 21  LRKLSRILKLPSS--SSSSFRKCSYLLEASRPLLD----LSNNVKKFHPPSFSRSFCSRP 80
           LRKL R LKL  +   S+  R  S L++ S   LD    + + ++  H    +RSF    
Sbjct: 9   LRKLPRFLKLSPTLLRSNGVRVSSNLIQDSIEPLDSFWRIGSRIR--HDSLTTRSF---- 68

Query: 81  LDFVGDDSRGPATIDYSSLMQEGEFHSLADSTIQGLQEKLEEYGDNLQIDGFDVDYGNEV 140
                  S+GPA++DYSS++QE EFH LA+ TI  L EK+E+YGDN+QIDGFD+DYGNEV
Sbjct: 69  ------SSQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEV 128

Query: 141 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKASLLSLLETEL 200
           LTL+LG+LGTYVLNKQTPNRQIW+SSP+SGPSRFDWD+++  WIYRR +A L  LLE EL
Sbjct: 129 LTLKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEEL 187

Query: 201 AQLCGEPIDLS 206
             LCGEPI LS
Sbjct: 189 ENLCGEPIQLS 187

The following BLAST results are available for this feature:

BLAST of Lsi10G008520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR07	2.5e-51	57.07	Frataxin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FH PE=1 SV=2	[more]
O35943	2.5e-22	44.00	Frataxin, mitochondrial OS=Mus musculus OX=10090 GN=Fxn PE=1 SV=1	[more]
Q05B87	1.6e-21	43.20	Frataxin, mitochondrial OS=Bos taurus OX=9913 GN=FXN PE=2 SV=1	[more]
Q16595	4.6e-21	42.40	Frataxin, mitochondrial OS=Homo sapiens OX=9606 GN=FXN PE=1 SV=2	[more]
Q54C45	6.7e-20	46.00	Frataxin, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=fxn PE=3 SV=1	[more]

BLAST of Lsi10G008520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAC6	1.4e-92	86.83	Ferroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G121430 PE=3 SV=1	[more]
A0A1S3BJ48	1.2e-91	89.58	Ferroxidase OS=Cucumis melo OX=3656 GN=LOC103490464 PE=3 SV=1	[more]
A0A6J1I2E7	7.5e-91	88.27	Ferroxidase OS=Cucurbita maxima OX=3661 GN=LOC111469879 PE=3 SV=1	[more]
A0A6J1G6C8	3.7e-90	87.76	Ferroxidase OS=Cucurbita moschata OX=3662 GN=LOC111451278 PE=3 SV=1	[more]
A0A6J1CG34	2.7e-88	86.15	Ferroxidase OS=Momordica charantia OX=3673 GN=LOC111011350 PE=3 SV=1	[more]

BLAST of Lsi10G008520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139965.2	2.8e-92	86.83	frataxin, mitochondrial [Cucumis sativus] >KGN46675.1 hypothetical protein Csa_0...	[more]
XP_008448200.2	2.4e-91	89.58	PREDICTED: frataxin, mitochondrial [Cucumis melo]	[more]
XP_022971111.1	1.5e-90	88.27	frataxin, mitochondrial [Cucurbita maxima]	[more]
KAG6604827.1	2.0e-90	87.82	Frataxin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947402.1	7.7e-90	87.76	frataxin, mitochondrial [Cucurbita moschata]	[more]

BLAST of Lsi10G008520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03240.1	1.8e-52	57.07	frataxin homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002908	Frataxin/CyaY	PRINTS	PR00904	FRATAXIN	coord: 147..162 score: 81.25 coord: 94..112 score: 31.58 coord: 132..147 score: 37.5
IPR002908	Frataxin/CyaY	SMART	SM01219	Frataxin_Cyay_2	coord: 94..205 e-value: 1.0E-49 score: 181.1
IPR002908	Frataxin/CyaY	PFAM	PF01491	Frataxin_Cyay	coord: 94..201 e-value: 2.8E-37 score: 127.1
IPR002908	Frataxin/CyaY	TIGRFAM	TIGR03421	TIGR03421	coord: 96..203 e-value: 4.3E-24 score: 82.4
IPR002908	Frataxin/CyaY	PANTHER	PTHR16821	FRATAXIN	coord: 34..204
IPR002908	Frataxin/CyaY	PROSITE	PS50810	FRATAXIN_2	coord: 94..202 score: 29.405598
IPR017789	Frataxin	TIGRFAM	TIGR03422	TIGR03422	coord: 98..195 e-value: 2.7E-35 score: 118.6
IPR036524	Frataxin/CyaY superfamily	GENE3D	3.30.920.10	Frataxin/CyaY	coord: 86..205 e-value: 5.6E-42 score: 144.5
IPR036524	Frataxin/CyaY superfamily	SUPERFAMILY	55387	Frataxin/Nqo15-like	coord: 85..202
IPR020895	Frataxin conserved site	PROSITE	PS01344	FRATAXIN_1	coord: 146..160
None	No IPR available	CDD	cd00503	Frataxin	coord: 94..204 e-value: 3.18121E-36 score: 120.834

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008520.1	Lsi10G008520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006879	cellular iron ion homeostasis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006783	heme biosynthetic process
biological_process	GO:0006811	ion transport
biological_process	GO:0018283	iron incorporation into metallo-sulfur cluster
biological_process	GO:1903329	regulation of iron-sulfur cluster assembly
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0008199	ferric iron binding
molecular_function	GO:0008198	ferrous iron binding
molecular_function	GO:0004322	ferroxidase activity
molecular_function	GO:0034986	iron chaperone activity