Lsi09G018010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G018010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II reaction center Psb28 protein
Location	chr09: 26750835 .. 26751990 (+)
RNA-Seq Expression	Lsi09G018010
Synteny	Lsi09G018010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGGTAACTCTATCACTTTCTCCATTGTATTCCCCCTTTTCCAACCCCTAATTCTCCCCCTCTTCAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

mRNA sequence

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-54
Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 2   ATLQSLASTSPASPHLHH---PSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 61
           A +++LA  SP S        P+ +    PS + H    S+F G SL        +L R 
Sbjct: 3   AVMKALAVASPISARAQPRRCPAGSSGG-PSQSLH----SSFGGVSLQCRRTKPASLHR- 62

Query: 62  RCEAYGRPWNPILMV--QPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDS 121
                 RP   ++M+  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDS
Sbjct: 63  -----SRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDS 122

Query: 122 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 181
           SAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS 
Sbjct: 123 SAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQ 180

Query: 182 ANGLQFVKK 186
           ANGLQFVKK
Sbjct: 183 ANGLQFVKK 180

[Close]

BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-51
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 59  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 118

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 119 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 178

Query: 185 FVKK 186
           FVKK
Sbjct: 179 FVKK 182

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BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-35
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.7e-35
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 77  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV-GDITGFYMIDEEGVI 136
           IQFIQG +E  +PDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 137 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL
Match: A0A6J1GN09 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 164/187 (87.70%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSS--TKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 60
           MATLQSLASTS +SPHLHHPSS  TKAA  SA  H S FSAFHGRSL +S G CQT+TRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC+ YGRP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 224 GLQFVKK 230

[Close]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.6e-84
Identity = 165/187 (88.24%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLAST    PHLHHPSSTK  F SAT HRS+FSAF+GRSL +S G CQTL RRRC
Sbjct: 40  MATLQSLAST----PHLHHPSSTK-VFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  EAYGRPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           EA+GRP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.0e-84
Identity = 163/187 (87.17%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSS--TKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 60
           MATLQSLASTS +SPHLHHPSS  TKAAF SA  H S+FSAFHGRSL +S G CQT+TRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC+ +GR  N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 217 GLQFVKK 223

[Close]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.8e-83
Identity = 162/186 (87.10%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKA-AFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MATLQSLASTS +SPHLHHPSST   A  SA  H S FSAFHGRSL +S G CQT+TRRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
           C+ YGRP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS E
Sbjct: 104 CQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGE 163

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 164 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 223

Query: 181 LQFVKK 186
           LQFVKK
Sbjct: 224 LQFVKK 229

[Close]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.8e-83
Identity = 161/186 (86.56%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKA-AFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MATLQSLASTS +SPHLHHPSST   AF SA  H S+FSAFHGRSL +S G CQT+TRRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRRR 96

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
           C+ +GR  N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS E
Sbjct: 97  CKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGE 156

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 157 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 216

Query: 181 LQFVKK 186
           LQFVKK
Sbjct: 217 LQFVKK 222

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: XP_038875127.1 (photosystem II reaction center Psb28 protein [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 2.3e-85
Identity = 164/185 (88.65%), Postives = 168/185 (90.81%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MA LQSL STS ASPH+HH   +   FPSAT HRS+FS+FHGRSL LSAGNCQTLT R  
Sbjct: 1   MAALQSLVSTSHASPHMHHHHPSTKVFPSATLHRSAFSSFHGRSLSLSAGNCQTLTHRN- 60

Query: 61  EAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120
              GRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV
Sbjct: 61  ---GRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120

Query: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180
           GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL
Sbjct: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180

Query: 181 QFVKK 186
           QFVKK
Sbjct: 181 QFVKK 181

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: KAG7014596.1 (Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.8 bits (826), Expect = 2.0e-84
Identity = 164/187 (87.70%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSS--TKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 60
           MATLQSLASTS +SPHLHHPSS  TKAAF SA  H S FSAFHGRSL +S G CQT+TRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC+ +GRP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 181 GLQFVKK 187

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: XP_022953298.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 4.4e-84
Identity = 164/187 (87.70%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSS--TKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 60
           MATLQSLASTS +SPHLHHPSS  TKAA  SA  H S FSAFHGRSL +S G CQT+TRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC+ YGRP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 224 GLQFVKK 230

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 7.4e-84
Identity = 165/187 (88.24%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLAST    PHLHHPSSTK  F SAT HRS+FSAF+GRSL +S G CQTL RRRC
Sbjct: 40  MATLQSLAST----PHLHHPSSTK-VFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  EAYGRPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           EA+GRP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 186
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: KAG6576078.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 162/186 (87.10%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MATLQSLASTSPASPHLHHPSSTKA-AFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MATLQSLASTS +SPHLHHPSST   AF SA  H S FSAFHGRSL +S G CQT+TRRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 60

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
           C+ +GRP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS E
Sbjct: 61  CQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180

Query: 181 LQFVKK 186
           LQFVKK
Sbjct: 181 LQFVKK 186

[Close]

BLAST of Lsi09G018010 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.6e-52
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 59  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 118

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 119 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 178

Query: 185 FVKK 186
           FVKK
Sbjct: 179 FVKK 182

[Close]

BLAST of Lsi09G018010 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.6e-52
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 185 FVKK 186
           FVKK
Sbjct: 194 FVKK 197

The following BLAST results are available for this feature:

BLAST of Lsi09G018010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	8.3e-54	63.49	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	5.1e-51	75.00	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	3.9e-35	59.29	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	8.7e-35	57.52	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	5.6e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of Lsi09G018010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GN09	2.1e-84	87.70	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KY50	3.6e-84	88.24	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JMC2	8.0e-84	87.17	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	1.8e-83	87.10	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JWT9	6.8e-83	86.56	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Lsi09G018010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875127.1	2.3e-85	88.65	photosystem II reaction center Psb28 protein [Benincasa hispida]	[more]
KAG7014596.1	2.0e-84	87.70	Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrospe...	[more]
XP_022953298.1	4.4e-84	87.70	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
XP_023005079.1	7.4e-84	88.24	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]
KAG6576078.1	1.7e-83	87.10	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]

BLAST of Lsi09G018010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	3.6e-52	75.00	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	3.6e-52	75.00	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 77..183 e-value: 2.5E-45 score: 151.2
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 77..182 e-value: 5.6E-43 score: 145.5
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..185
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 74..183 score: 30.461342
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 75..185 e-value: 1.7E-45 score: 155.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018010.1	Lsi09G018010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II