Lsi09G003260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G003260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Expansin
Location	chr09: 3404485 .. 3407388 (-)
RNA-Seq Expression	Lsi09G003260
Synteny	Lsi09G003260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATATAGGGTTCCACTCAAAGAACTCATTGGCCTGAGAATAATTCGGCAACAATGGCTTCTTCTTCAGGCTTCAATATCTTCTTGGTGGCATTGGTTTTGGCCATTTTCAACAGATCAACGCTCGCTGTGTTCCAACCAAGCTCTTGGAAACTCGCTCACGCCACCTTTTATGGCGATGAAACTGCCTCTGAAACCATGGGTACGTAATTGCTCTTTATAGATTTAAATCTTATTTTGGTCCCTTCATGTAGTGTTGTTTTTGTCTGTTTTTTAAGTTTTGTCTTATAACTATTTGATTTTTTGTTTTAGTTATCCACTCCGTACTGATACTTTCAAAAATTAAAGTTAAATAATAAAATATGTTATTTATTTTTAGAATTTGACTAGAAATAGAAGTATTTCCTTGACAAAGGTAAAAATAAGAATTGAAAAATTGAGAGAACAAATAGAAATTTCAAAAAAAAAAAAAAAAAAAAAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAATTATTGTTCACTACAACAATTTTGGCTTTAAATGTCAATTCTAAACTGACATATTATACATATGATGACAGATTACAAACCATCATTGTATTGCAAAAAATAACTATGTTTATTTTTATTTTATTTTATTTGAGTTTAAATTTAAATATTTTATATCAGTTCATCTATGCTCATGTTTGACAACTATTTTAGTTTTTTAATTTTATTTTTATATCACTTTTTCAATTACAATTAGAGCATAAACTAAAAAGATGATTTATTTTGTTTTGTTTTGTTTTCAGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCGACACTGTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGTGTGCAGTCAAAGGCATGCTATGCGAACGTTCCGTTCACCACCGTGACGGCGACCAACCTCTGCCCGCCAAATTGGTCGCAGGACTCGAACGCCGGCGGCTGGTGCAACCCACCAAGAGTTCATTTTGACATGGCCAAGCCTGCCTTCATGAAGATCGCCTGGTGGAAGGCCGGCATTGTCCCCGTTCAGTACCGCAGGTCAGTTGAGTTTAATTTTTTAGTTCATGTGTTCTAAATATGAAAGAGATTACACATACCCTAGCCTTCTTTAAAAATTTTGGGCTTAATGGGAATAGTTATATATATATTCTCGACCACTAGTCTAACTCAACTAGTTAAGACATTATATCAACGACCACAACGGTAGAAGTTTTTATTTTTGTCCCATGTTATTTAAAGGAAAATTTTCATAAATAGAAAAAAATGTCAAAATATTTACAGAAAATAGCAAAAAAGAACACTGATAAACATTGATAGACTTCTATCAGCATCTATTAGTGATAAACTTCTATTATTTCTATCACTGATAGACTCTGATAGACTTCTATTAGCGTCTATCACAACTATCTAAAAATTTTACTATTTTGTGTAAATAATTTTCCTTATTTTTCTATTTTTTAAAAAAAAATTCCTTTATTTAAAACTAAAATTAGAATCAAAACAAAACAAGCAACTATCGCTCTTCTAAAGGTTGAAAGTTCAATCTCTTACTCCCACATTTTTTTAGGTAAAAAAAAAAAGTTAAATTATAAAGTTAGTCCATATGATTTGGAGAAAAGTTATAATTTAGTCCCTATAGTTTAAAAATTAGAATTGGTATATGCGATTTAGAACTTATGATGTTTATCAAACCATTTAAAAATAATGGGACTAAAATTTAACTTTCTCCAAACCTATAGGGATCAAATTTATAATTTAACTAAATAATAATAATAACAATACTAGACCGCGAGATCTTGATTTTGAATTATTGCATGCAATGTGTTTTAAGTGTAGTCACATAACATAGTCTTGAATTAAGAATACGCTTTCTTGAATTCACATCCAACAGATATTACGAGACAACTAAATTATATGGTAAAATGTAGGGTTCCATGTGTGAAAAAAGGAGGAGTTCGATTGAGCTTACAAGGAAATGGATATTGGTTATTGGTGTATGTGATGAACGTAGGAGGAGGAGGAGATGTGTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGTCATAA

mRNA sequence

AAAAATATAGGGTTCCACTCAAAGAACTCATTGGCCTGAGAATAATTCGGCAACAATGGCTTCTTCTTCAGGCTTCAATATCTTCTTGGTGGCATTGGTTTTGGCCATTTTCAACAGATCAACGCTCGCTGTGTTCCAACCAAGCTCTTGGAAACTCGCTCACGCCACCTTTTATGGCGATGAAACTGCCTCTGAAACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCGACACTGTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGTGTGCAGTCAAAGGCATGCTATGCGAACGTTCCGTTCACCACCGTGACGGCGACCAACCTCTGCCCGCCAAATTGGTCGCAGGACTCGAACGCCGGCGGCTGGTGCAACCCACCAAGAGTTCATTTTGACATGGCCAAGCCTGCCTTCATGAAGATCGCCTGGTGGAAGGCCGGCATTGTCCCCGTTCAGTACCGCAGGAGGAGGAGGAGATGTGTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGTCATAA

Coding sequence (CDS)

ATGGCTTCTTCTTCAGGCTTCAATATCTTCTTGGTGGCATTGGTTTTGGCCATTTTCAACAGATCAACGCTCGCTGTGTTCCAACCAAGCTCTTGGAAACTCGCTCACGCCACCTTTTATGGCGATGAAACTGCCTCTGAAACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCGACACTGTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGTGTGCAGTCAAAGGCATGCTATGCGAACGTTCCGTTCACCACCGTGACGGCGACCAACCTCTGCCCGCCAAATTGGTCGCAGGACTCGAACGCCGGCGGCTGGTGCAACCCACCAAGAGTTCATTTTGACATGGCCAAGCCTGCCTTCATGAAGATCGCCTGGTGGAAGGCCGGCATTGTCCCCGTTCAGTACCGCAGGAGGAGGAGGAGATGTGTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGTCATAA

Protein sequence

MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSERKQNRMDNNES

Homology

[Close]

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot
Match: Q9LN94 (Expansin-A7 OS=Arabidopsis thaliana OX=3702 GN=EXPA7 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.9e-57
Identity = 104/157 (66.24%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 1   MASSSGFNIF--LVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           ++SS  FN F  +V +V AI        ++P  W+ AHATFYGDET  ETMGGACGYGNL
Sbjct: 4   ISSSWSFNKFFSIVFVVFAISGEFVAGYYRPGPWRYAHATFYGDETGGETMGGACGYGNL 63

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           F +GYG  TAALS+TLFN+GY CG CFQI C +S  CY+    T VTATNLCPPNW QDS
Sbjct: 64  FNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSG-KSTVVTATNLCPPNWYQDS 123

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NAGGWCNPPR HFDMAKPAFMK+A+W+AGI+PV YRR
Sbjct: 124 NAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRR 159

[Close]

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot
Match: Q8W2X8 (Putative expansin-A30 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.0e-54
Identity = 96/158 (60.76%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 2   ASSSGFNIFLVALVLAIFNRSTL--AVFQPSSWKLAHATFYGDETASETMGGACGYGNLF 61
           +S++     L A+++++   +T   A F+   W  AHATFYGDETASETMGGACGYGNL+
Sbjct: 5   SSTTATTAILAAVIISLAGAATTVDAKFRAMQWTPAHATFYGDETASETMGGACGYGNLY 64

Query: 62  TNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSN 121
            +GYGTDTAALS+TLF +GY CGTC+Q++CV + +CY   P  TVTATNLCPPNW++D +
Sbjct: 65  ASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATNLCPPNWAEDPD 124

Query: 122 --AGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
              GGWCNPPR HFD++KPAFM++A W+AGIVPV YRR
Sbjct: 125 RGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRR 162

[Close]

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot
Match: Q9LQ07 (Expansin-A18 OS=Arabidopsis thaliana OX=3702 GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.7e-52
Identity = 92/145 (63.45%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 11  LVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAAL 70
           LV L +     +++A +  + W+ A ATFYGD+T S TMGGACGYGN++ +GYG  T AL
Sbjct: 10  LVILSMMAMIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTAL 69

Query: 71  SSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVH 130
           S+ LFN GYACG CFQ+KCV S  CY   P T VTATN+CPPN+ Q SN GGWCNPPRVH
Sbjct: 70  STALFNEGYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVH 129

Query: 131 FDMAKPAFMKIAWWKAGIVPVQYRR 156
           FD+ KPAFMKIA WKAGI+PV YRR
Sbjct: 130 FDLTKPAFMKIANWKAGIIPVSYRR 154

[Close]

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot
Match: Q9M2S9 (Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-46
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 9   IFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTA 68
           IF + L+L+  +     VF   SW+ AHATFYG   AS TMGGACGYGNL++ GYGT+TA
Sbjct: 11  IFPLFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTA 70

Query: 69  ALSSTLFNNGYACGTCFQIKCVQS-KACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPP 128
           ALS++LFN+G +CG CF+IKCV   K C+   P   VTATN CPPN +Q S+ GGWCNPP
Sbjct: 71  ALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPP 130

Query: 129 RVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           R HFD+A P F+KIA ++AGIVP+ YRR
Sbjct: 131 RSHFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-45
Identity = 82/151 (54.30%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 6   GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGT 65
           G  + ++  +LA+       V+    W+ AHATFYG   AS TMGGACGYGNL++ GYG 
Sbjct: 5   GLVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGV 64

Query: 66  DTAALSSTLFNNGYACGTCFQIKCVQS-KACYANVPFTTVTATNLCPPNWSQDSNAGGWC 125
           +TAALS+ LFNNG++CG CF++KC    K C++  P   +TATN CPPN++Q S+ GGWC
Sbjct: 65  NTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWC 124

Query: 126 NPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NPPR HFD+A P F+KIA ++AGIVPV +RR
Sbjct: 125 NPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL
Match: A0A0A0KR05 (Expansin OS=Cucumis sativus OX=3659 GN=Csa_5G156210 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.4e-82
Identity = 149/157 (94.90%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAIF RSTLAVFQPS WKLAHATFYGDETASETMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAIFMRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 157

[Close]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL
Match: A0A6J1I3Y5 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111468948 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 142/155 (91.61%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFT 60
           MASS GFN F + LV AIF R TLAVF+PSSWKLAHATFYGDETAS TMGGACGYGNLFT
Sbjct: 1   MASSLGFNFFFLPLVFAIFTRPTLAVFKPSSWKLAHATFYGDETASATMGGACGYGNLFT 60

Query: 61  NGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNA 120
           NGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANVP+TTVTATNLCPPNWSQDSNA
Sbjct: 61  NGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPYTTVTATNLCPPNWSQDSNA 120

Query: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPV YRR
Sbjct: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRR 155

[Close]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL
Match: A0A5A7THN7 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003170 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 149/169 (88.17%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAI  RSTLAVF+PS WKLAHATFYGDETASETMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAISIRSTLAVFRPSPWKLAHATFYGDETASETMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACG CFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGACFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSER 168
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGI+PVQY  RR  CV  G  R
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQY--RRVPCVKKGGVR 167

[Close]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL
Match: A0A1S3ATJ0 (Expansin OS=Cucumis melo OX=3656 GN=LOC103482689 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.4e-79
Identity = 148/169 (87.57%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAI  RSTLAVF+PS WKLAHATFYGDETAS+TMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAISIRSTLAVFRPSPWKLAHATFYGDETASQTMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACG CFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGACFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSER 168
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGI+PVQY  RR  CV  G  R
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQY--RRVPCVKKGGVR 167

[Close]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL
Match: A0A6J1E3X3 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111430371 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.3e-78
Identity = 140/155 (90.32%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFT 60
           MASS GFN F + LV AIF R TLAVF+PS WKLAHATFYGDETAS TMGGACGYGNLFT
Sbjct: 1   MASSLGFNFFFLPLVFAIFTRPTLAVFRPSPWKLAHATFYGDETASATMGGACGYGNLFT 60

Query: 61  NGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNA 120
           NGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANV +TTVTATNLCPPNWSQDSNA
Sbjct: 61  NGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVKYTTVTATNLCPPNWSQDSNA 120

Query: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPV YRR
Sbjct: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRR 155

[Close]

BLAST of Lsi09G003260 vs. NCBI nr
Match: XP_038875954.1 (expansin-A7-like [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 155/167 (92.81%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFT 60
           MASSSGFNIFLVALVLAIF RSTLAVFQPS WKLAHATFYGDETASETMGGACGYGNLFT
Sbjct: 1   MASSSGFNIFLVALVLAIFTRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNLFT 60

Query: 61  NGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNA 120
           NGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQ+SNA
Sbjct: 61  NGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQNSNA 120

Query: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSER 168
           GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQY  RR  CV  G  R
Sbjct: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQY--RRVPCVKKGGVR 165

[Close]

BLAST of Lsi09G003260 vs. NCBI nr
Match: XP_004144001.1 (expansin-A7 [Cucumis sativus] >KGN50161.1 hypothetical protein Csa_000294 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 149/157 (94.90%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAIF RSTLAVFQPS WKLAHATFYGDETASETMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAIFMRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 157

[Close]

BLAST of Lsi09G003260 vs. NCBI nr
Match: KAA0042813.1 (expansin-A7 [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 4.0e-79
Identity = 149/169 (88.17%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAI  RSTLAVF+PS WKLAHATFYGDETASETMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAISIRSTLAVFRPSPWKLAHATFYGDETASETMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACG CFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGACFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSER 168
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGI+PVQY  RR  CV  G  R
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQY--RRVPCVKKGGVR 167

[Close]

BLAST of Lsi09G003260 vs. NCBI nr
Match: XP_022969884.1 (expansin-A7-like [Cucurbita maxima])

HSP 1 Score: 305.1 bits (780), Expect = 4.0e-79
Identity = 142/155 (91.61%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFT 60
           MASS GFN F + LV AIF R TLAVF+PSSWKLAHATFYGDETAS TMGGACGYGNLFT
Sbjct: 1   MASSLGFNFFFLPLVFAIFTRPTLAVFKPSSWKLAHATFYGDETASATMGGACGYGNLFT 60

Query: 61  NGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNA 120
           NGYGTDT ALSSTLFNNGYACGTCFQIKCVQSKACYANVP+TTVTATNLCPPNWSQDSNA
Sbjct: 61  NGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPYTTVTATNLCPPNWSQDSNA 120

Query: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPV YRR
Sbjct: 121 GGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRR 155

[Close]

BLAST of Lsi09G003260 vs. NCBI nr
Match: XP_008437185.1 (PREDICTED: expansin-A7 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 9.0e-79
Identity = 148/169 (87.57%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MASSS--GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           MASSS   FN+F+VALVLAI  RSTLAVF+PS WKLAHATFYGDETAS+TMGGACGYGNL
Sbjct: 1   MASSSSLSFNLFMVALVLAISIRSTLAVFRPSPWKLAHATFYGDETASQTMGGACGYGNL 60

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           FTNGYGTDT ALSSTLFNNGYACG CFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS
Sbjct: 61  FTNGYGTDTVALSSTLFNNGYACGACFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSER 168
           NAGGWCNPPRVHFDMAKPAFMKIAWWKAGI+PVQY  RR  CV  G  R
Sbjct: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQY--RRVPCVKKGGVR 167

[Close]

BLAST of Lsi09G003260 vs. TAIR 10
Match: AT1G12560.1 (expansin A7 )

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-58
Identity = 104/157 (66.24%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 1   MASSSGFNIF--LVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNL 60
           ++SS  FN F  +V +V AI        ++P  W+ AHATFYGDET  ETMGGACGYGNL
Sbjct: 4   ISSSWSFNKFFSIVFVVFAISGEFVAGYYRPGPWRYAHATFYGDETGGETMGGACGYGNL 63

Query: 61  FTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDS 120
           F +GYG  TAALS+TLFN+GY CG CFQI C +S  CY+    T VTATNLCPPNW QDS
Sbjct: 64  FNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSG-KSTVVTATNLCPPNWYQDS 123

Query: 121 NAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NAGGWCNPPR HFDMAKPAFMK+A+W+AGI+PV YRR
Sbjct: 124 NAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRR 159

[Close]

BLAST of Lsi09G003260 vs. TAIR 10
Match: AT1G62980.1 (expansin A18 )

HSP 1 Score: 204.5 bits (519), Expect = 6.9e-53
Identity = 92/145 (63.45%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 11  LVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAAL 70
           LV L +     +++A +  + W+ A ATFYGD+T S TMGGACGYGN++ +GYG  T AL
Sbjct: 10  LVILSMMAMIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTAL 69

Query: 71  SSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVH 130
           S+ LFN GYACG CFQ+KCV S  CY   P T VTATN+CPPN+ Q SN GGWCNPPRVH
Sbjct: 70  STALFNEGYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVH 129

Query: 131 FDMAKPAFMKIAWWKAGIVPVQYRR 156
           FD+ KPAFMKIA WKAGI+PV YRR
Sbjct: 130 FDLTKPAFMKIANWKAGIIPVSYRR 154

[Close]

BLAST of Lsi09G003260 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-47
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 9   IFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTA 68
           IF + L+L+  +     VF   SW+ AHATFYG   AS TMGGACGYGNL++ GYGT+TA
Sbjct: 11  IFPLFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTA 70

Query: 69  ALSSTLFNNGYACGTCFQIKCVQS-KACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPP 128
           ALS++LFN+G +CG CF+IKCV   K C+   P   VTATN CPPN +Q S+ GGWCNPP
Sbjct: 71  ALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPP 130

Query: 129 RVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           R HFD+A P F+KIA ++AGIVP+ YRR
Sbjct: 131 RSHFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Lsi09G003260 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 )

HSP 1 Score: 182.2 bits (461), Expect = 3.7e-46
Identity = 82/151 (54.30%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 6   GFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGT 65
           G  + ++  +LA+       V+    W+ AHATFYG   AS TMGGACGYGNL++ GYG 
Sbjct: 5   GLVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGV 64

Query: 66  DTAALSSTLFNNGYACGTCFQIKCVQS-KACYANVPFTTVTATNLCPPNWSQDSNAGGWC 125
           +TAALS+ LFNNG++CG CF++KC    K C++  P   +TATN CPPN++Q S+ GGWC
Sbjct: 65  NTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWC 124

Query: 126 NPPRVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           NPPR HFD+A P F+KIA ++AGIVPV +RR
Sbjct: 125 NPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Lsi09G003260 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-45
Identity = 80/148 (54.05%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 9   IFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTA 68
           +F   ++ ++ +     ++   +W+ AHATFYG   AS TMGGACGYGNL++ GYGT+TA
Sbjct: 8   LFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTA 67

Query: 69  ALSSTLFNNGYACGTCFQIKCVQS-KACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPP 128
           ALS+ LFNNG +CG CF++KC    + C++  P   +TATN CPPN +Q S+ GGWCNPP
Sbjct: 68  ALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPP 127

Query: 129 RVHFDMAKPAFMKIAWWKAGIVPVQYRR 156
           R HFD+A P F+KIA ++AGIVPV YRR
Sbjct: 128 REHFDLAMPVFLKIAQYRAGIVPVSYRR 155

The following BLAST results are available for this feature:

BLAST of Lsi09G003260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN94	5.9e-57	66.24	Expansin-A7 OS=Arabidopsis thaliana OX=3702 GN=EXPA7 PE=3 SV=1	[more]
Q8W2X8	8.0e-54	60.76	Putative expansin-A30 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA30 PE=3 SV...	[more]
Q9LQ07	9.7e-52	63.45	Expansin-A18 OS=Arabidopsis thaliana OX=3702 GN=EXPA18 PE=2 SV=1	[more]
Q9M2S9	3.6e-46	59.46	Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1	[more]
Q38865	5.2e-45	54.30	Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2	[more]

BLAST of Lsi09G003260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR05	9.4e-82	94.90	Expansin OS=Cucumis sativus OX=3659 GN=Csa_5G156210 PE=3 SV=1	[more]
A0A6J1I3Y5	2.0e-79	91.61	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111468948 PE=3 SV=1	[more]
A0A5A7THN7	2.0e-79	88.17	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003170 PE=3 ...	[more]
A0A1S3ATJ0	4.4e-79	87.57	Expansin OS=Cucumis melo OX=3656 GN=LOC103482689 PE=3 SV=1	[more]
A0A6J1E3X3	6.3e-78	90.32	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111430371 PE=3 SV=1	[more]

BLAST of Lsi09G003260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875954.1	1.2e-83	92.81	expansin-A7-like [Benincasa hispida]	[more]
XP_004144001.1	1.9e-81	94.90	expansin-A7 [Cucumis sativus] >KGN50161.1 hypothetical protein Csa_000294 [Cucum...	[more]
KAA0042813.1	4.0e-79	88.17	expansin-A7 [Cucumis melo var. makuwa]	[more]
XP_022969884.1	4.0e-79	91.61	expansin-A7-like [Cucurbita maxima]	[more]
XP_008437185.1	9.0e-79	87.57	PREDICTED: expansin-A7 [Cucumis melo]	[more]

BLAST of Lsi09G003260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12560.1	4.2e-58	66.24	expansin A7	[more]
AT1G62980.1	6.9e-53	63.45	expansin A18	[more]
AT3G55500.1	2.5e-47	59.46	expansin A16	[more]
AT2G28950.1	3.7e-46	54.30	expansin A6	[more]
AT2G39700.1	2.4e-45	54.05	expansin A4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 102..112 score: 73.03 coord: 121..138 score: 76.85 coord: 138..151 score: 61.67 coord: 62..76 score: 75.11
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 71..89 score: 54.34 coord: 49..67 score: 66.05 coord: 31..46 score: 54.53 coord: 146..162 score: 44.26
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 67..153 e-value: 3.6E-44 score: 162.8
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 50..155 score: 26.181286
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 67..153 e-value: 9.8E-22 score: 77.1
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 17..157 e-value: 2.2E-40 score: 139.9
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 31..155
None	No IPR available	PANTHER	PTHR31867:SF170	EXPANSIN	coord: 22..155
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 22..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G003260.1	Lsi09G003260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane