Lsi08G015600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G015600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger CCCH domain-containing protein 20
Location	chr08: 23679943 .. 23680863 (+)
RNA-Seq Expression	Lsi08G015600
Synteny	Lsi08G015600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACCGAATCAATGCTCCTCAATCCGACGGCCCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCCTATTTCACCGCCCCCCACGTGTCGCCACTCGATTCGCCCACGGCGGCGCTCATGGACTTTGATTCCTCCTTCTGGGAAGATCCAGACTTGCCGGCGGCTGTGGATGCCTTCTCGTGCGACCATTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCTCGTGGAAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGCGCTGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCCTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGTTGCCAGCGGCGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAACTCCGGATTCCGGGGAAACAGAGCCTCAGGTCTCCACGGGCGAGAGAAATCGCCGTCCCTTCTGTATCATCGCCGACGTCGATCCTAATATCGCCGTCGTCGGACTCGCCACCTATGTCTCCGATTAGCCCTGTAATTAGCGGCGGCGAATCATTCAGCAGATTAGTCGCATTGATGCACAGTCTCCACCTGGATGAATTAAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGACTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAGGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCTCGGAACTAA

mRNA sequence

ATGCTCACCGAATCAATGCTCCTCAATCCGACGGCCCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCCTATTTCACCGCCCCCCACGTGTCGCCACTCGATTCGCCCACGGCGGCGCTCATGGACTTTGATTCCTCCTTCTGGGAAGATCCAGACTTGCCGGCGGCTGTGGATGCCTTCTCGTGCGACCATTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCTCGTGGAAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGCGCTGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCCTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGTTGCCAGCGGCGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAACTCCGGATTCCGGGGAAACAGAGCCTCAGGTCTCCACGGGCGAGAGAAATCGCCGTCCCTTCTGTATCATCGCCGACGTCGATCCTAATATCGCCGTCGTCGGACTCGCCACCTATGTCTCCGATTAGCCCTGTAATTAGCGGCGGCGAATCATTCAGCAGATTAGTCGCATTGATGCACAGTCTCCACCTGGATGAATTAAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGACTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAGGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCTCGGAACTAA

Coding sequence (CDS)

ATGCTCACCGAATCAATGCTCCTCAATCCGACGGCCCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCCTATTTCACCGCCCCCCACGTGTCGCCACTCGATTCGCCCACGGCGGCGCTCATGGACTTTGATTCCTCCTTCTGGGAAGATCCAGACTTGCCGGCGGCTGTGGATGCCTTCTCGTGCGACCATTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCTCGTGGAAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGCGCTGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCCTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGTTGCCAGCGGCGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAACTCCGGATTCCGGGGAAACAGAGCCTCAGGTCTCCACGGGCGAGAGAAATCGCCGTCCCTTCTGTATCATCGCCGACGTCGATCCTAATATCGCCGTCGTCGGACTCGCCACCTATGTCTCCGATTAGCCCTGTAATTAGCGGCGGCGAATCATTCAGCAGATTAGTCGCATTGATGCACAGTCTCCACCTGGATGAATTAAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGACTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAGGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCTCGGAACTAA

Protein sequence

MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLPAAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTNPAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN

Homology

[Close]

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.7e-73
Identity = 150/330 (45.45%), Postives = 193/330 (58.48%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDL-------PA 68
           NPT HI  W  L +       Y +    S +    A L  +  S   DPD         +
Sbjct: 11  NPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPDS 70

Query: 69  AVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 128
            +DA++CDHFRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF+YSG  CP+ R 
Sbjct: 71  PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK 130

Query: 129 GCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLRS 188
           GCCK+GDACE++HGVFE WLHP RYRTQPC+DG  C+RRVCFFAHS +Q+R+   QS   
Sbjct: 131 GCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDR 190

Query: 189 PRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSR---------LVALMHSL 248
             + ++  P++       ISPSS+SPP+SP     S     SR         +VA + +L
Sbjct: 191 VDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNL 250

Query: 249 HLDELKT------NPAVSGFS------------------PRLRRNSGAFDLWDRENEEEP 299
            L+++K+      N  + G+                   P      G  ++W+   EEEP
Sbjct: 251 QLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEP 310

[Close]

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-68
Identity = 153/320 (47.81%), Postives = 198/320 (61.88%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAPHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPAA------VDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  +        D+FS D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQ 188
           YSG  CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT C+RR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAVPS--VSSPTSILISPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++   S   +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSLHLDE---LKTNPAVSG----FSPRLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M  + L+      ++P  S     FS  LR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-66
Identity = 149/334 (44.61%), Postives = 191/334 (57.19%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAA--IPSYFTAPHVSPLDSPTAALMDFDSSFWEDPD 60
           M+ E+    PT  I  W  L++   +        +P  S L++  A L  +  S   DP+
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTSEFFSPVMNSPDCSMLEA-LAGLQRYLPSNEPDPE 61

Query: 61  L-------PAAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNY 120
                    + +DA+SCDHFRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK++Y
Sbjct: 62  SYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 121

Query: 121 SGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQL 180
           SG  CPD R G CKKGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++CFFAHS +QL
Sbjct: 122 SGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQL 181

Query: 181 RIPGKQSLRSPRAREIAVPSVSSPTSILISPSSDSPPMSP-----ISPVIS------GGE 240
           R    +S     + +++ P  +    + ISP S SPPMSP      SP+        G  
Sbjct: 182 RFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSC 241

Query: 241 SFSRLVALMHSLHLDELKT----NPAVSGFSPR-------------LRRNSGAFDLWDRE 297
           S + +V    +L  + +K+    NP     SPR                  G  D+W+  
Sbjct: 242 SINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYG 301

[Close]

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 8.3e-59
Identity = 138/306 (45.10%), Postives = 177/306 (57.84%), Query Frame = 0


Query: 59  LPAAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPD 118
           + AAVDA++CD FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK++YSG  CPD
Sbjct: 65  MAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPD 124

Query: 119 LRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRI-PGKQ 178
            R G CK+GDACEYAHGVFE WLHP RYRTQPC+DGT C+RRVCFFAH+ +QLR+ P +Q
Sbjct: 125 FRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQ 184

Query: 179 SLRSPRA---------------REIAVPSV-------SSPTSILI----SPSSDSPPMSP 238
           S  SPR+               R  A  S        SSPTS L+    SP S+SPP+SP
Sbjct: 185 S--SPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSP 244

Query: 239 --ISPVISG-----GESFSRLVALMHSLHLDELKTNPA---------------------- 294
              + +  G     G   + ++A    L L+++K++P+                      
Sbjct: 245 DGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLY 304

[Close]

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.3e-56
Identity = 143/376 (38.03%), Postives = 189/376 (50.27%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYF--TAPHVSPLDSPTAALMDFDSSFWEDPDLPAAVDAF 68
           +P + +      +    A P +   T  H  P +   AA  + +++      + AAVDA+
Sbjct: 19  SPVSGVEGGGGRESEVVAAPYHLLDTLRHYLPSNEAAAAEDEEEAA-----AVAAAVDAY 78

Query: 69  SCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRHGCCKK 128
           +CD FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSG  CPD R G CK+
Sbjct: 79  ACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKR 138

Query: 129 GDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRI---PGKQSLRSPR 188
           GDACE+AHGVFE WLHP RYRTQPC+DGT C+RRVCFFAH+ +QLR+     +Q   SPR
Sbjct: 139 GDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPR 198

Query: 189 A----------------------REIAVPSV-------SSPTSILISPSSDSPPMS-PIS 248
                                  R  A  S        SSPTS L+SP    P  S P+S
Sbjct: 199 GCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLS 258

Query: 249 PVISG----------GESFSRLVALMHSLHLDELKTNPAVSGF--------SPRLRRNSG 304
           P  +G          G   + +   +  L L   ++ P+ + F        SP+    + 
Sbjct: 259 PDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAA 318

[Close]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 5.8e-164
Identity = 281/306 (91.83%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPTAHIS+WDSLDDP+AAI SYF+A HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VD FSCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRAREIAVP+VSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHSL LDELKTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.9e-162
Identity = 279/306 (91.18%), Postives = 291/306 (95.10%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPTAHIS+WDSLDDP+AAI SYF+A HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VD FSCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRAREIAVP+VSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHSL LDE KTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL
Match: A0A0A0LNN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 8.7e-160
Identity = 274/307 (89.25%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDA+SCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRARE+A+P+VSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHSL LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP LRR+SG AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL
Match: Q5NDD3 (Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c5 PE=2 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.8e-158
Identity = 272/307 (88.60%), Postives = 289/307 (94.14%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDA+SCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRARE+A+P+VSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHSL LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESLSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP LRR+SG AFDLWDR NEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRGNEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 9.0e-157
Identity = 267/306 (87.25%), Postives = 282/306 (92.16%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESM LNPT HISSWDSLDDPAAAIPSYFTA +VSPLDSPTAA+MD+DSSFWED DLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDAF+CDHFRMYEFKVR CARGRSHDWTKCPYAH GEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCC KGDACEYAHGVFE WLHPDRYRTQPCRDG  C+RRVCFFAHSSEQLRIPGKQS+R
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPR REIA P+VSSPTSILIS SSDSPPMSPISP+ +GGESFSRLVALMH+LH DELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P +SGF P  RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMR+NSV+RVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 SAGSRN 307
            AGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of Lsi08G015600 vs. NCBI nr
Match: KAA0060981.1 (zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 281/306 (91.83%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPTAHIS+WDSLDDP+AAI SYF+A HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VD FSCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRAREIAVP+VSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHSL LDELKTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Lsi08G015600 vs. NCBI nr
Match: XP_008444505.1 (PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [Cucumis melo])

HSP 1 Score: 581.6 bits (1498), Expect = 3.9e-162
Identity = 279/306 (91.18%), Postives = 291/306 (95.10%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPTAHIS+WDSLDDP+AAI SYF+A HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VD FSCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRAREIAVP+VSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHSL LDE KTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Lsi08G015600 vs. NCBI nr
Match: KGN62412.1 (hypothetical protein Csa_018765 [Cucumis sativus])

HSP 1 Score: 572.8 bits (1475), Expect = 1.8e-159
Identity = 274/307 (89.25%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDA+SCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRARE+A+P+VSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHSL LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP LRR+SG AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Lsi08G015600 vs. NCBI nr
Match: NP_001295793.1 (zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >CAI30889.1 putative CCCH-type zinc finger protein CsSEF1 [Cucumis sativus])

HSP 1 Score: 567.8 bits (1462), Expect = 5.8e-158
Identity = 272/307 (88.60%), Postives = 289/307 (94.14%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDA+SCD FRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGC+RRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPRARE+A+P+VSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHSL LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESLSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPRLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP LRR+SG AFDLWDR NEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRGNEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Lsi08G015600 vs. NCBI nr
Match: XP_022997351.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 562.8 bits (1449), Expect = 1.9e-156
Identity = 267/306 (87.25%), Postives = 282/306 (92.16%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDLP 60
           M+ ESM LNPT HISSWDSLDDPAAAIPSYFTA +VSPLDSPTAA+MD+DSSFWED DLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  AAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120
           A VDAF+CDHFRMYEFKVR CARGRSHDWTKCPYAH GEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLR 180
           HGCC KGDACEYAHGVFE WLHPDRYRTQPCRDG  C+RRVCFFAHSSEQLRIPGKQS+R
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSRLVALMHSLHLDELKTN 240
           SPR REIA P+VSSPTSILIS SSDSPPMSPISP+ +GGESFSRLVALMH+LH DELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PAVSGFSPRLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P +SGF P  RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMR+NSV+RVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 SAGSRN 307
            AGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of Lsi08G015600 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-74
Identity = 150/330 (45.45%), Postives = 193/330 (58.48%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAPHVSPLDSPTAALMDFDSSFWEDPDL-------PA 68
           NPT HI  W  L +       Y +    S +    A L  +  S   DPD         +
Sbjct: 11  NPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPDS 70

Query: 69  AVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLRH 128
            +DA++CDHFRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF+YSG  CP+ R 
Sbjct: 71  PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK 130

Query: 129 GCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQLRIPGKQSLRS 188
           GCCK+GDACE++HGVFE WLHP RYRTQPC+DG  C+RRVCFFAHS +Q+R+   QS   
Sbjct: 131 GCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDR 190

Query: 189 PRAREIAVPSVSSPTSILISPSSDSPPMSPISPVISGGESFSR---------LVALMHSL 248
             + ++  P++       ISPSS+SPP+SP     S     SR         +VA + +L
Sbjct: 191 VDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNL 250

Query: 249 HLDELKT------NPAVSGFS------------------PRLRRNSGAFDLWDRENEEEP 299
            L+++K+      N  + G+                   P      G  ++W+   EEEP
Sbjct: 251 QLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEP 310

[Close]

BLAST of Lsi08G015600 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-70
Identity = 153/320 (47.81%), Postives = 198/320 (61.88%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAPHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPAA------VDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  +        D+FS D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQ 188
           YSG  CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT C+RR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAVPS--VSSPTSILISPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++   S   +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSLHLDE---LKTNPAVSG----FSPRLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M  + L+      ++P  S     FS  LR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Lsi08G015600 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-70
Identity = 153/320 (47.81%), Postives = 198/320 (61.88%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAPHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPAA------VDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  +        D+FS D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQ 188
           YSG  CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT C+RR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAVPS--VSSPTSILISPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++   S   +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSLHLDE---LKTNPAVSG----FSPRLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M  + L+      ++P  S     FS  LR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Lsi08G015600 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-67
Identity = 149/334 (44.61%), Postives = 191/334 (57.19%), Query Frame = 0


Query: 1   MLTESMLLNPTAHISSWDSLDDPAAA--IPSYFTAPHVSPLDSPTAALMDFDSSFWEDPD 60
           M+ E+    PT  I  W  L++   +        +P  S L++  A L  +  S   DP+
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTSEFFSPVMNSPDCSMLEA-LAGLQRYLPSNEPDPE 61

Query: 61  L-------PAAVDAFSCDHFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNY 120
                    + +DA+SCDHFRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK++Y
Sbjct: 62  SYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 121

Query: 121 SGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCQRRVCFFAHSSEQL 180
           SG  CPD R G CKKGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++CFFAHS +QL
Sbjct: 122 SGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQL 181

Query: 181 RIPGKQSLRSPRAREIAVPSVSSPTSILISPSSDSPPMSP-----ISPVIS------GGE 240
           R    +S     + +++ P  +    + ISP S SPPMSP      SP+        G  
Sbjct: 182 RFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSC 241

Query: 241 SFSRLVALMHSLHLDELKT----NPAVSGFSPR-------------LRRNSGAFDLWDRE 297
           S + +V    +L  + +K+    NP     SPR                  G  D+W+  
Sbjct: 242 SINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYG 301

[Close]

BLAST of Lsi08G015600 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 189.1 bits (479), Expect = 5.2e-48
Identity = 108/232 (46.55%), Postives = 139/232 (59.91%), Query Frame = 0


Query: 37  SPLDSP-TAALMDFDSSFWEDPDLPAAVDA-FSCDHFRMYEFKVRTCARGRSHDWTKCPY 96
           SPL SP      +F   +  DP LP   ++ ++ D FRMY FKVR C+R  SHDWT+CP+
Sbjct: 226 SPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPF 285

Query: 97  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDG 156
            H GE ARRRDPRKF+YS   CPD R G C++GD CEYAHGVFE WLHP +YRT+ C+DG
Sbjct: 286 VHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 345

Query: 157 TGCQRRVCFFAHSSEQLR---IPGKQSLRSPRAREIAVPSVSSPTSILISPSSDSPPMSP 216
           TGC RRVCFFAH+ E+LR        ++ SPR+        ++  S+L    S    MSP
Sbjct: 346 TGCARRVCFFAHTPEELRPLYASTGSAVPSPRSN----ADYAAALSLLPGSPSGVSVMSP 405

Query: 217 ISPVISG-GESFSRLV---ALMHSLHLDELKTNPAVSGFSPRLRRNSGAFDL 260
           +SP  +G G S S +      + +LHL      P  +  S RLR +  A D+
Sbjct: 406 LSPSAAGNGMSHSNMAWPQPNVPALHL------PGSNLQSSRLRSSLNARDI 447

The following BLAST results are available for this feature:

BLAST of Lsi08G015600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	2.7e-73	45.45	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	1.2e-68	47.81	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	3.2e-66	44.61	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	8.3e-59	45.10	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	2.3e-56	38.03	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Lsi08G015600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5C0	5.8e-164	91.83	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	1.9e-162	91.18	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A0A0LNN8	8.7e-160	89.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1	[more]
Q5NDD3	2.8e-158	88.60	Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c...	[more]
A0A6J1K790	9.0e-157	87.25	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Lsi08G015600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060981.1	1.2e-163	91.83	zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa]	[more]
XP_008444505.1	3.9e-162	91.18	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [C...	[more]
KGN62412.1	1.8e-159	89.25	hypothetical protein Csa_018765 [Cucumis sativus]	[more]
NP_001295793.1	5.8e-158	88.60	zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >CAI30889.1 puta...	[more]
XP_022997351.1	1.9e-156	87.25	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]

BLAST of Lsi08G015600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.9e-74	45.45	CCCH-type zinc finger family protein	[more]
AT2G25900.1	8.2e-70	47.81	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	8.2e-70	47.81	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.2e-67	44.61	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	5.2e-48	46.55	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 145..168 e-value: 43.0 score: 3.2 coord: 110..136 e-value: 0.012 score: 24.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 110..137 score: 11.882471
None	No IPR available	GENE3D	4.10.1000.10		coord: 107..178 e-value: 1.1E-6 score: 30.3
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 8..244 coord: 251..302
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 251..302
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 8..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G015600.1	Lsi08G015600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding