Lsi08G013290 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCAGTCTTTTTTTTTCCTTCTCTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTACCTCCATCTTTTCCGATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACGTGAGTTTCTTATTTATCTTCTTCGTTTTGCTGTTTGTTTGTTTTTCTGATTCCCGATGTGCGATCAATCTTGTTTGAGTGTTAATTTAAGTTCGAAGATCGGTGTGTATATTCAATTATTGAGTTTGGGAGGTTTTTTTCAAGTAAAGGTTGGTGGATTTACGAATCTGGATCGTGATTTCTACTTCGATTTGATTAGATGTTAATTAATGTGTAAATTGTTACTCAACCAGTAGAATTTCCTCGAATTTAATTGAGTTGTGAAGATTTGGGACACATCTTAATTTTTGTCTCTCTCGAACTTTTGGCAATAGATTTTTTCTATTTTAGCAATTGTAATCTGCCTCCGGTTTTTTCGTAGTGGAGCGCCTTTCTGTAAGATCCTAACCATAAATGTCGCGAGGCACTAGCGAGGCAATTTTTTGATATTTTATGAATGCCTTTGAACTCTTTAATATCAGAACCGATGACCTACATATCGATCTATTTTACTTCTATCTTTCTGTTTCTTTTCTTTAAACATTTGTTGGATCAACATATATTTATTTATTTTTGAACAGTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGGTAATTACAACATCCTTCTAGCCAACTGGTTAGAGTTCATCTCATATGCATTTCATATCTGGCATTATCCCATTCATTATGCACATTTAGTTCCTATCATTCTTTCTTTCAATTTTTTCTTTTAATTCTGTGGATTTTCCTTTTGTTGTAGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTGAACAATTTTCTAATAAATTTTTATGAGACACACTGGATTTGGACGTTGAGATTTGAAAGATTGTTTATTTTAATCGGCAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTGTTAAAGGTATAGAATCTGATTTTTCTGCCTCGAAGGTCTTAGAGAAGCTCTTCAAATTAGCTGAGATTATTGTCCTCTACAAATTTGATACTTAGCTCTATTAACTATTATTTCTTTGTAATAAGGTTTTTAAGAATACTGTTTGATACAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGTAATTATATTGACATTATCCTTAATTTTCCATTAGAAACTACAAAGTGCACTTTGTAATGACTTTAAATCTTGTGAACAGGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA ATTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCAGTCTTTTTTTTTCCTTCTCTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTACCTCCATCTTTTCCGATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA ATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGKVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLKVPCILFFS Homology
BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FV70 (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 5.3e-15 Identity = 87/249 (34.94%), Postives = 114/249 (45.78%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FV71 (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10 Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q16254 (Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q8R0K9 (Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FNY0 (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07 Identity = 41/95 (43.16%), Postives = 46/95 (48.42%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A5A7VD98 (Transcription factor E2FC isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005070 PE=3 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BAQ0 (transcription factor E2FC isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BBY1 (transcription factor E2FC isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BC18 (transcription factor E2FC isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A6J1HCX4 (transcription factor E2FC-like OS=Cucurbita moschata OX=3662 GN=LOC111462362 PE=3 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 4.0e-90 Identity = 187/241 (77.59%), Postives = 197/241 (81.74%), Query Frame = 0
BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_038886724.1 (transcription factor E2FC-like [Benincasa hispida]) HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95 Identity = 195/239 (81.59%), Postives = 201/239 (84.10%), Query Frame = 0
BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444793.1 (PREDICTED: transcription factor E2FC isoform X1 [Cucumis melo]) HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444795.1 (PREDICTED: transcription factor E2FC isoform X3 [Cucumis melo] >KAA0065170.1 transcription factor E2FC isoform X3 [Cucumis melo var. makuwa]) HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444794.1 (PREDICTED: transcription factor E2FC isoform X2 [Cucumis melo]) HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91 Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0
BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_023547197.1 (transcription factor E2FC-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 345.1 bits (884), Expect = 4.4e-91 Identity = 189/242 (78.10%), Postives = 198/242 (81.82%), Query Frame = 0
BLAST of Lsi08G013290 vs. TAIR 10
Match: AT1G47870.2 (winged-helix DNA-binding transcription factor family protein ) HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16 Identity = 84/244 (34.43%), Postives = 110/244 (45.08%), Query Frame = 0
BLAST of Lsi08G013290 vs. TAIR 10
Match: AT1G47870.1 (winged-helix DNA-binding transcription factor family protein ) HSP 1 Score: 82.8 bits (203), Expect = 3.8e-16 Identity = 87/249 (34.94%), Postives = 114/249 (45.78%), Query Frame = 0
BLAST of Lsi08G013290 vs. TAIR 10
Match: AT5G22220.2 (E2F transcription factor 1 ) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12 Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0
BLAST of Lsi08G013290 vs. TAIR 10
Match: AT5G22220.3 (E2F transcription factor 1 ) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12 Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0
BLAST of Lsi08G013290 vs. TAIR 10
Match: AT2G36010.1 (E2F transcription factor 3 ) HSP 1 Score: 55.8 bits (133), Expect = 4.9e-08 Identity = 41/95 (43.16%), Postives = 46/95 (48.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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