Lsi08G013290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G013290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor E2FC-like
Location	chr08: 21589823 .. 21591722 (+)
RNA-Seq Expression	Lsi08G013290
Synteny	Lsi08G013290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCAGTCTTTTTTTTTCCTTCTCTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTACCTCCATCTTTTCCGATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACGTGAGTTTCTTATTTATCTTCTTCGTTTTGCTGTTTGTTTGTTTTTCTGATTCCCGATGTGCGATCAATCTTGTTTGAGTGTTAATTTAAGTTCGAAGATCGGTGTGTATATTCAATTATTGAGTTTGGGAGGTTTTTTTCAAGTAAAGGTTGGTGGATTTACGAATCTGGATCGTGATTTCTACTTCGATTTGATTAGATGTTAATTAATGTGTAAATTGTTACTCAACCAGTAGAATTTCCTCGAATTTAATTGAGTTGTGAAGATTTGGGACACATCTTAATTTTTGTCTCTCTCGAACTTTTGGCAATAGATTTTTTCTATTTTAGCAATTGTAATCTGCCTCCGGTTTTTTCGTAGTGGAGCGCCTTTCTGTAAGATCCTAACCATAAATGTCGCGAGGCACTAGCGAGGCAATTTTTTGATATTTTATGAATGCCTTTGAACTCTTTAATATCAGAACCGATGACCTACATATCGATCTATTTTACTTCTATCTTTCTGTTTCTTTTCTTTAAACATTTGTTGGATCAACATATATTTATTTATTTTTGAACAGTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGGTAATTACAACATCCTTCTAGCCAACTGGTTAGAGTTCATCTCATATGCATTTCATATCTGGCATTATCCCATTCATTATGCACATTTAGTTCCTATCATTCTTTCTTTCAATTTTTTCTTTTAATTCTGTGGATTTTCCTTTTGTTGTAGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTGAACAATTTTCTAATAAATTTTTATGAGACACACTGGATTTGGACGTTGAGATTTGAAAGATTGTTTATTTTAATCGGCAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTGTTAAAGGTATAGAATCTGATTTTTCTGCCTCGAAGGTCTTAGAGAAGCTCTTCAAATTAGCTGAGATTATTGTCCTCTACAAATTTGATACTTAGCTCTATTAACTATTATTTCTTTGTAATAAGGTTTTTAAGAATACTGTTTGATACAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGTAATTATATTGACATTATCCTTAATTTTCCATTAGAAACTACAAAGTGCACTTTGTAATGACTTTAAATCTTGTGAACAGGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA

mRNA sequence

ATTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCAGTCTTTTTTTTTCCTTCTCTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTACCTCCATCTTTTCCGATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA

Coding sequence (CDS)

ATGTCAAACGCCGTCGAAGATCTCATCCTCCGACACCGCCACTCCGATTTCCGATTTCATCTGCTTCGTTCTCACTCTCACCATCGCGACATGTCGTCGTCGTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGAAGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATACGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGTCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGGACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGCTAGGTAAAGTTGAGGTTCAAAAGAGGAGGATTTATGACATTACTAATGTTCTTGAAGGAATAGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGTGCCTTGCATTTTATTTTTTTCTTGA

Protein sequence

MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGKVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLKVPCILFFS

Homology

[Close]

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FV70 (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.3e-15
Identity = 87/249 (34.94%), Postives = 114/249 (45.78%), Query Frame = 0


Query: 2   SNAVEDLILRHRH-SDFRFHLLRS-HSHHRDMSSSSSSSSSAP----------ALPPLCF 61
           SN+ ED  L + H S FRF LL+S  S     SS + SS++ P           L PL  
Sbjct: 5   SNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLI- 64

Query: 62  LQYHRPSPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSN 121
                 SP  D S +   +   ++      + L    +++  E++   +V+V +      
Sbjct: 65  ------SPHWDDSYSQITQKVQKSRKN-HRIQLGSIANMSGGESIDIAKVIVKQ------ 124

Query: 122 DSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPN-LSTNGRYDSSLG------- 181
           +SS + V     K     KL K  K      +     G N  S N RYDSSLG       
Sbjct: 125 ESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQN--GGLNGASINCRYDSSLGLLTKKFV 184

Query: 182 ------------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQE 213
                              +EVQKRRIYDITNVLEGIGLIEKTT NHIRWKG +  G ++
Sbjct: 185 KLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKD 237

[Close]

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FV71 (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 115 PVSSANEKQNKKLKLQKNSKSRTQKS-IDEPVDGPNLSTNG--RYDSSLG---------- 174
           PVS    K  K  +  K++KS T  S  +    G N +  G  RYDSSLG          
Sbjct: 86  PVSGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLI 145

Query: 175 ---------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELND 213
                           +EVQKRRIYDITNVLEGIGLIEKT  N I+WKG +   P E  +
Sbjct: 146 KQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIE 205

[Close]

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q16254 (Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 166 QKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGP----QELNDQVGRLK 213
           QKRRIYDITNVLEGIGLIEK + N I+WKG    GP    +E+ D++  LK
Sbjct: 54  QKRRIYDITNVLEGIGLIEKKSKNSIQWKGV---GPGCNTREIADKLIELK 101

[Close]

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q8R0K9 (Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 166 QKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGP----QELNDQVGRLK 213
           QKRRIYDITNVLEGIGLIEK + N I+WKG    GP    +E+ D++  LK
Sbjct: 54  QKRRIYDITNVLEGIGLIEKKSKNSIQWKGV---GPGCNTREIADKLIELK 101

[Close]

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot
Match: Q9FNY0 (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07
Identity = 41/95 (43.16%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 131 KNSKSRTQKSIDEPVDGP-NLSTNG--RYDSSLG-------------------------K 190
           K +KS  Q  I      P  L+ +G  RYDSSLG                          
Sbjct: 140 KGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAET 199

Query: 191 VEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCE 198
           +EVQKRRIYDITNVLEGI LIEK   N I WKG +
Sbjct: 200 LEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVD 234

[Close]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A5A7VD98 (Transcription factor E2FC isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005070 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BAQ0 (transcription factor E2FC isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BBY1 (transcription factor E2FC isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A1S3BC18 (transcription factor E2FC isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL
Match: A0A6J1HCX4 (transcription factor E2FC-like OS=Cucurbita moschata OX=3662 GN=LOC111462362 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 4.0e-90
Identity = 187/241 (77.59%), Postives = 197/241 (81.74%), Query Frame = 0


Query: 1   MSNAVEDLIL--RHRHSDFRFHLLRSHSHHRDMSSS--SSSSSSAPALPPLCFLQYHRPS 60
           MSNAVEDLIL  RHRHSDFRFHLL+S SHHRDMSSS  SSSSSSAPALPPLC LQ HRP 
Sbjct: 1   MSNAVEDLILRHRHRHSDFRFHLLQSRSHHRDMSSSSASSSSSSAPALPPLCLLQCHRPF 60

Query: 61  PPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPV 120
           PPSDQSNAC+ R AP AHSTVATLDLKR Y INDSEALA  +VV SEQRMRSNDS C+PV
Sbjct: 61  PPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKPV 120

Query: 121 SSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG--------------- 180
           SSAN+KQNKKLKLQKNSKSRTQKS+DEP+D PNLSTNGRYDSSLG               
Sbjct: 121 SSANKKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAED 180

Query: 181 ----------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRL 213
                      ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVG+L
Sbjct: 181 GTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKL 240

[Close]

BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_038886724.1 (transcription factor E2FC-like [Benincasa hispida])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 195/239 (81.59%), Postives = 201/239 (84.10%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDM--SSSSSSSSSAPALPPLCFLQYHRPSPP 60
           MSNAVEDLILRHRHSDFRFHLLRSHSHHRDM  SSSSSSSSSAPALPPLCFLQYHRPSPP
Sbjct: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSSSAPALPPLCFLQYHRPSPP 60

Query: 61  SDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSS 120
           SDQSN C+GRLA +AHS VATLDLKRAYDINDSEALASRQVV SEQRMRSNDSSCEPVS 
Sbjct: 61  SDQSNDCNGRLATDAHSAVATLDLKRAYDINDSEALASRQVVASEQRMRSNDSSCEPVSI 120

Query: 121 ANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG----------------- 180
              KQNK+ KLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG                 
Sbjct: 121 G--KQNKRSKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGT 180

Query: 181 --------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                    ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGP+ELNDQVG LK
Sbjct: 181 LDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPRELNDQVGTLK 237

[Close]

BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444793.1 (PREDICTED: transcription factor E2FC isoform X1 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444795.1 (PREDICTED: transcription factor E2FC isoform X3 [Cucumis melo] >KAA0065170.1 transcription factor E2FC isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_008444794.1 (PREDICTED: transcription factor E2FC isoform X2 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSD 60
           MS AVEDLI RHRHSD+RFHLL SHS++RDMSS SSSSSSA ALPP C LQYHRPSP SD
Sbjct: 1   MSKAVEDLIFRHRHSDYRFHLLSSHSNNRDMSSFSSSSSSALALPPQCCLQYHRPSPTSD 60

Query: 61  QSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEPVSSAN 120
           QSNACDGRLAPEAHS V+T+DLKRAYDI++SEALASRQVV SEQRMRSNDSSCEPVSSAN
Sbjct: 61  QSNACDGRLAPEAHSKVSTIDLKRAYDISNSEALASRQVVASEQRMRSNDSSCEPVSSAN 120

Query: 121 EKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG------------------- 180
           EKQNKK KLQKNSKS+TQKS+DEPVD PN STNGRYDSSLG                   
Sbjct: 121 EKQNKKFKLQKNSKSKTQKSVDEPVDSPNPSTNGRYDSSLGFLTKKFISLVQEAEDGTLD 180

Query: 181 ------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLK 213
                  ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKG ERRGPQELNDQVGRLK
Sbjct: 181 LNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGPQELNDQVGRLK 237

[Close]

BLAST of Lsi08G013290 vs. NCBI nr
Match: XP_023547197.1 (transcription factor E2FC-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 4.4e-91
Identity = 189/242 (78.10%), Postives = 198/242 (81.82%), Query Frame = 0


Query: 1   MSNAVEDLIL--RHRHSDFRFHLLRSHSHHRDMSS---SSSSSSSAPALPPLCFLQYHRP 60
           MSNAVEDLIL  RHRHSDFRFHLL+SHSHHRDMSS   SSSSSSSAPALPPLC LQ HRP
Sbjct: 1   MSNAVEDLILRHRHRHSDFRFHLLQSHSHHRDMSSSSASSSSSSSAPALPPLCLLQCHRP 60

Query: 61  SPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCEP 120
            PPSDQSNAC+ R AP AHSTVATLDLKR Y INDSEALA  +VV SEQRMRSNDS C+P
Sbjct: 61  FPPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKP 120

Query: 121 VSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLG-------------- 180
           VSSANEKQNKKLKLQKNSKSRTQKS+DEP+D PNLSTNGRYDSSLG              
Sbjct: 121 VSSANEKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAE 180

Query: 181 -----------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGR 213
                       ++VQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVG+
Sbjct: 181 DGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGK 240

[Close]

BLAST of Lsi08G013290 vs. TAIR 10
Match: AT1G47870.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 84/244 (34.43%), Postives = 110/244 (45.08%), Query Frame = 0


Query: 2   SNAVEDLILRHRH-SDFRFHLLRSHSHHRDMSSSSSSSSS------APALPPLCFLQYHR 61
           SN+ ED  L + H S FRF LL+S S      SS + SS+      + +LP         
Sbjct: 5   SNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLIS 64

Query: 62  PSPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSNDSSCE 121
           P      S       + + H     + L    +++  E++   +V+V +      +SS +
Sbjct: 65  PHWDDSYSQITQKVKSRKNH----RIQLGSIANMSGGESIDIAKVIVKQ------ESSPQ 124

Query: 122 PVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPN-LSTNGRYDSSLG------------ 181
            V     K     KL K  K      +     G N  S N RYDSSLG            
Sbjct: 125 NVKRVYNKSKGGTKLLKAGKRMANGEVQN--GGLNGASINCRYDSSLGLLTKKFVKLIQE 184

Query: 182 -------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQV 213
                         +EVQKRRIYDITNVLEGIGLIEKTT NHIRWKG +  G ++L DQ+
Sbjct: 185 AEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQI 236

[Close]

BLAST of Lsi08G013290 vs. TAIR 10
Match: AT1G47870.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-16
Identity = 87/249 (34.94%), Postives = 114/249 (45.78%), Query Frame = 0


Query: 2   SNAVEDLILRHRH-SDFRFHLLRS-HSHHRDMSSSSSSSSSAP----------ALPPLCF 61
           SN+ ED  L + H S FRF LL+S  S     SS + SS++ P           L PL  
Sbjct: 5   SNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLI- 64

Query: 62  LQYHRPSPPSDQSNACDGRLAPEAHSTVATLDLKRAYDINDSEALASRQVVVSEQRMRSN 121
                 SP  D S +   +   ++      + L    +++  E++   +V+V +      
Sbjct: 65  ------SPHWDDSYSQITQKVQKSRKN-HRIQLGSIANMSGGESIDIAKVIVKQ------ 124

Query: 122 DSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPN-LSTNGRYDSSLG------- 181
           +SS + V     K     KL K  K      +     G N  S N RYDSSLG       
Sbjct: 125 ESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQN--GGLNGASINCRYDSSLGLLTKKFV 184

Query: 182 ------------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQE 213
                              +EVQKRRIYDITNVLEGIGLIEKTT NHIRWKG +  G ++
Sbjct: 185 KLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKD 237

[Close]

BLAST of Lsi08G013290 vs. TAIR 10
Match: AT5G22220.2 (E2F transcription factor 1 )

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12
Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 115 PVSSANEKQNKKLKLQKNSKSRTQKS-IDEPVDGPNLSTNG--RYDSSLG---------- 174
           PVS    K  K  +  K++KS T  S  +    G N +  G  RYDSSLG          
Sbjct: 86  PVSGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLI 145

Query: 175 ---------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELND 213
                           +EVQKRRIYDITNVLEGIGLIEKT  N I+WKG +   P E  +
Sbjct: 146 KQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIE 205

[Close]

BLAST of Lsi08G013290 vs. TAIR 10
Match: AT5G22220.3 (E2F transcription factor 1 )

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12
Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 115 PVSSANEKQNKKLKLQKNSKSRTQKS-IDEPVDGPNLSTNG--RYDSSLG---------- 174
           PVS    K  K  +  K++KS T  S  +    G N +  G  RYDSSLG          
Sbjct: 86  PVSGKGGKAKKTSRSAKSNKSGTLASGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLI 145

Query: 175 ---------------KVEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELND 213
                           +EVQKRRIYDITNVLEGIGLIEKT  N I+WKG +   P E  +
Sbjct: 146 KQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIE 205

[Close]

BLAST of Lsi08G013290 vs. TAIR 10
Match: AT2G36010.1 (E2F transcription factor 3 )

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-08
Identity = 41/95 (43.16%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 131 KNSKSRTQKSIDEPVDGP-NLSTNG--RYDSSLG-------------------------K 190
           K +KS  Q  I      P  L+ +G  RYDSSLG                          
Sbjct: 140 KGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAET 199

Query: 191 VEVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCE 198
           +EVQKRRIYDITNVLEGI LIEK   N I WKG +
Sbjct: 200 LEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVD 234

The following BLAST results are available for this feature:

BLAST of Lsi08G013290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV70	5.3e-15	34.94	Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1	[more]
Q9FV71	1.0e-10	40.48	Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1	[more]
Q16254	2.4e-07	60.78	Transcription factor E2F4 OS=Homo sapiens OX=9606 GN=E2F4 PE=1 SV=2	[more]
Q8R0K9	2.4e-07	60.78	Transcription factor E2F4 OS=Mus musculus OX=10090 GN=E2f4 PE=1 SV=1	[more]
Q9FNY0	7.0e-07	43.16	Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1	[more]

BLAST of Lsi08G013290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD98	7.3e-92	78.48	Transcription factor E2FC isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BAQ0	7.3e-92	78.48	transcription factor E2FC isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=...	[more]
A0A1S3BBY1	7.3e-92	78.48	transcription factor E2FC isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=...	[more]
A0A1S3BC18	7.3e-92	78.48	transcription factor E2FC isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488036 PE=...	[more]
A0A6J1HCX4	4.0e-90	77.59	transcription factor E2FC-like OS=Cucurbita moschata OX=3662 GN=LOC111462362 PE=...	[more]

BLAST of Lsi08G013290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886724.1	1.7e-95	81.59	transcription factor E2FC-like [Benincasa hispida]	[more]
XP_008444793.1	1.5e-91	78.48	PREDICTED: transcription factor E2FC isoform X1 [Cucumis melo]	[more]
XP_008444795.1	1.5e-91	78.48	PREDICTED: transcription factor E2FC isoform X3 [Cucumis melo] >KAA0065170.1 tra...	[more]
XP_008444794.1	1.5e-91	78.48	PREDICTED: transcription factor E2FC isoform X2 [Cucumis melo]	[more]
XP_023547197.1	4.4e-91	78.10	transcription factor E2FC-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi08G013290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47870.2	1.3e-16	34.43	winged-helix DNA-binding transcription factor family protein	[more]
AT1G47870.1	3.8e-16	34.94	winged-helix DNA-binding transcription factor family protein	[more]
AT5G22220.2	7.4e-12	40.48	E2F transcription factor 1	[more]
AT5G22220.3	7.4e-12	40.48	E2F transcription factor 1	[more]
AT2G36010.1	4.9e-08	43.16	E2F transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003316	E2F/DP family, winged-helix DNA-binding domain	SMART	SM01372	E2F_TDP_2	coord: 128..195 e-value: 6.4E-7 score: 39.0
IPR003316	E2F/DP family, winged-helix DNA-binding domain	PFAM	PF02319	E2F_TDP	coord: 162..195 e-value: 2.1E-14 score: 53.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 116..197 e-value: 6.2E-15 score: 56.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123
None	No IPR available	PANTHER	PTHR12081:SF51	TRANSCRIPTION FACTOR E2FC	coord: 164..212
None	No IPR available	PANTHER	PTHR12081:SF51	TRANSCRIPTION FACTOR E2FC	coord: 14..161
IPR015633	E2F Family	PANTHER	PTHR12081	TRANSCRIPTION FACTOR E2F	coord: 14..161
IPR015633	E2F Family	PANTHER	PTHR12081	TRANSCRIPTION FACTOR E2F	coord: 164..212
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 156..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G013290.1	Lsi08G013290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding