Lsi08G005400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	extensin-like
Location	chr08: 13461637 .. 13461936 (+)
RNA-Seq Expression	Lsi08G005400
Synteny	Lsi08G005400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

Protein sequence

MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF

Homology

[Close]

BLAST of Lsi08G005400 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLP--PSPPICRHA 60
           MGF  LASYL  LLIAFF LNLPSKLTAHYIH SS S N Y+Y PP LP  P PPICR  
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSS-STNLYEYGPPPLPLLPPPPICRQG 60

Query: 61  APPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           APP P KKQ + KPLP   PP PPK  WPR+FT KS PPPF
Sbjct: 61  APP-PAKKQNKLKPLPSLSPP-PPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lsi08G005400 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 66/101 (65.35%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHA 60
           MGF  LASYL  LLIAFF LNLP+KLTAHYIH SS S N Y Y  P   LPP PPICR  
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSS-STNLYGYGAPPLPLPPPPPICRQG 60

Query: 61  APPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           APP P KKQ + K LP   PP PP   WPR+FT KS PPPF
Sbjct: 61  APP-PAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lsi08G005400 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 72/140 (51.43%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL-------- 60
           MGFVILASYL FLL AFFSLNLPSKLTAHYIHPSS   +  YK  P   PRL        
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  --------PPSPPICRH--AAPPLPPKKQYEFKPLP--------LTPPPL---------- 100
                   PPSP   RH    PP P KK+Y+FKP P           PPL          
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Lsi08G005400 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSP 60
           MG +ILAS YL  LLIA  SL+LPSKL A  +HPS  + N ++Y+PP      +LP P P
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCT-NPHEYQPPPPFPSEKLPYPPP 60

Query: 61  PICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
            +C   APP PPK +++FK  P  P  +PP   W RKFT  S PPPF
Sbjct: 61  SVCTQLAPP-PPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

[Close]

BLAST of Lsi08G005400 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 1   MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP--------- 60
           MG +IL+S YL  LLIA  SL+LPSKL A  +HPS  +  H Y+  PP LP         
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPICRH-AAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           P P +C   A PP PPK +++FK  P  P  +PP   W RKFT  S PPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 106

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 66/101 (65.35%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP--RLPPSPPICRHA 60
           MGF  LASYL  LLIAFF LNLP+KLTAHYIH SS S N Y Y  P   LPP PPICR  
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSS-STNLYGYGAPPLPLPPPPPICRQG 60

Query: 61  APPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           APP P KKQ + K LP   PP PP   WPR+FT KS PPPF
Sbjct: 61  APP-PAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 72/140 (51.43%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSS-ISINHYKYKP---PRL-------- 60
           MGFVILASYL FLL AFFSLNLPSKLTAHYIHPSS   +  YK  P   PRL        
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  --------PPSPPICRH--AAPPLPPKKQYEFKPLP--------LTPPPL---------- 100
                   PPSP   RH    PP P KK+Y+FKP P           PPL          
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-09
Identity = 55/110 (50.00%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINH-YKYKPPRLP--------- 60
           MG +IL S YL  LLIA  SL+LPSKL A  +HPS  +  H Y+  PP LP         
Sbjct: 1   MGSLILPSFYLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           P P +C   APP PPK +++FKP P  P P+P    W RKFT KS PPPF
Sbjct: 61  PPPSVCTQLAPPPPPKNRHKFKPSP--PHPMP----WQRKFTHKSPPPPF 104

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MGFVILAS-YLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPP------RLP-PSP 60
           MG +ILAS YL  LLIA  SL+LPSKL A  +HPS  + N ++Y+PP      +LP P P
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCT-NPHEYQPPPPFPSEKLPYPPP 60

Query: 61  PICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
            +C   APP PPK +++FK  P  P  +PP   W RKFT  S PPPF
Sbjct: 61  SVCTQLAPP-PPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: KAG6578902.1 (hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-07
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAP 60
           MG +I  SY   LLI F SL LPSKLTA+YIH            PP  PP P +  H AP
Sbjct: 70  MGSLIFKSYFFLLLIVFVSLYLPSKLTAYYIH------------PPLRPPPPSV--HGAP 129

Query: 61  PLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           P P KK+Y+FK     PPP  P   WP +F  KS PPP+
Sbjct: 130 P-PAKKKYKFK----APPPPAPAKPWPIRFHHKSPPPPY 149

The following BLAST results are available for this feature:

BLAST of Lsi08G005400 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G005400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	1.5e-20	69.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A5A7UW72	2.7e-17	65.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E2A1	1.1e-15	51.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JSJ5	1.5e-07	50.47	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A6J1FFZ9	1.6e-06	47.75	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]

BLAST of Lsi08G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058957.1	5.5e-17	65.35	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
TYK29731.1	2.3e-15	51.43	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]
XP_023551507.1	3.2e-09	50.00	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993352.1	3.0e-07	50.47	extensin-like [Cucurbita maxima]	[more]
KAG6578902.1	6.7e-07	48.48	hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi08G005400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005400.1	Lsi08G005400.1	mRNA