Lsi08G001070 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGGTATGAAAAAACCTAAAATATCATTAAATTATTACTTACAAAAAAGTGCCAAAAAAAAATTATTCCTTTTAGATCCTTTATTGAACTTCAAGATCCACTATTAGTAAATACTACATTCGTACAATTTACAACATATATATATATATATATGTATGTGTGTATATATATATATTTGTAATATTTGTATAAAAAATTTAATTAAACCATTAAATTATAAATTGTGGTGTACAAAGATTTTTTTATTAAAAATTACGTGAATCAAGTTAGTACAAAAAAAATACAAAAATAAAAGTTATTTTGCAATAATTTTCTTTACAAATAAAAGTTATTTTATAGAACGCAATCATAAAATTAAGAGATCTCTTTCAACTATTTGACACGAAAGAAAATACAACAACATTTTCTTAACATGACTTTGTTTATATAAAAATTAAAAAAAAAAAAAAAAAACTATACGACTGAGATATACCTTGAATCAAAGCTATTTTTGGTAACATAGAAAAATAATTATATATAGGGAGGGGAAAGATGTCAATTTATTGTAGAATTTGAAAAGATAAAAGAATAACTTAAAGGTTTTAGAATGTGAAGTGAGTGAATCCATTCATGGTAGAAAATAATAATATTAATAATAACAAATATTTTCTATTGACTTTAATGGTTAGTAGAGAGTGCGTCAATTAATTGATAGCCTTTTCAATTGCCTATGGTTAAGTTATAGAAATTGAATCATTATTAATTGAAATTGATGATATATTTTTAAAATGTAGAAGAACCTAATTTTGTTGTGGTCATGTTTGATTATGGGGATGGTTGAAATTTTTAAAATGTAGAAGGGACAAAGAAGGCAAAAAAGAAAAAAAAAATGATTCTCCCGAATTCCTACTTTTTTATATAGTAAAGTTAATGATCAAAATTTCAAACGGTTTATGTGGTTTGCCTTGTGTTTTAAAATAATGAAAGATTGTCATTGTGAGAGAATTAACATCCTGTTAATTATCCATATTACCTATCGTGCACCATTGTTGGGGGTTTTGAGGGGTGAGTGCGAGAGTGAGTGACAAGGAGAGAGTGAGGAAGAGGGCTAGCGTGTGATGACACTATTGCATTGGATTAGTTGAACGTGAGTGTAAGGGAGGGACGAAGAGTGGGAGTGTGAGGGAGTGAGGAAGAGTCCTAGAGTGTGAGAGCACTATTGTAGGGATAACCTTAATTTCATACTCGCTAAATTTACAAGGGGCAACATGAATATATATCTATATATATGACAAAGTATGTGGAATATATATCTCAATAGAAACAGACTAACATTAAAATATGAGGTATATATTATATAAAACCTTAAATTTGTATTTGCTCTAAGTACATCAGGAATTAATATCATACATATTTGAAATAAACATTGTATATATACATAAATACCATATAAGTGACAGAATAAAATAATATTAATTAAATAATAATCTAAAATACAAAAAAAAAAAACATAACAAAAAATTATTCCTAAATTGAATGGATAAATAACATATATATGAAAGAATAAAATACTATTCATTAAATAATACCCACATTAATTACCAGATATACAATATTAATTGATAATACGATTTTTTTAATATTTAATTGAATATTTGATTGAATTTTTAATTAATATTAAATTGTAAAAATTTTAAAACTTTAATAAGAGAGAGAATGAGTAATAAAGTTATATTTGTCTGAAAATTAAGATAAAATCGAAATATATTACAACTTTAGGATATTTTGTTAAATTTAGTTTGTGAACTAGGTTAAATCTCTAAAATAATTTTTTTTTCCCTAATTTCTCCTTTGAGGAAATTGTACAAATGGTCTAATTTCAGGAGCCCAAATAATTTATTTTTTTTCAATATTTAAGAGTTAATTAGAAAATGTGGGTGGTTTTAAGAAAAATTTGGTAAAAAGGGGTGGTTTTAAAATTATTTAGGAAAATAGGGTAATTTTTTTGTCTTTTAGTGAAACTCTTCAAGTTAGAATGGGACCTACATAATGAAGGAAATAACAATTATTTTTATTATTATTATTTTTTTTTTTACAAATTAATTTACTTTATTTTTCTTTAAGGAAATATAATATCACTTTTTTTTTATATATATAATTGTTATTTTATTATATCATATAATTGTCTTTCATTTATCTAGCAAGATTAAATTTAATTAAAAAAATATTACATATTTAATCATTTTATTTGTAAAATAATAAACTATTAAATATAAATTAAGATAATACCACTATTATTTTTTAATCTTACATCATATTGTAATTTTATTTTAAAGCACGAAAAATTGTAATAGATAGTAAAACTAAGGAAAAAAATCTAAACATATAACACTTCTTTTAAAATGTTTGCAAATATGGCAAATGTTGATAAGTCAACTTTTGAATTTTTTAAAACTTTTAAATTTGTCCTTGTTTGTATGTTAGGGAAGCATGTTTCCTTTTAATTTTAATTTTATCCTTCATTATGAACATAGAATAATTATAGATGATTTATAATCAATTAATTATTTATTATGATTAATTTTTATTACTTCATTCATTATTAATATATCATATTTATATAAAAAAAATTAGTATTATTTATTAACATATCATATTTTTATTTGTTTGTTTCACTTTTTATATAATCTATTGTTTATTAAAATATATTTTCTTATATTATTTAATTAATATTAAAATTACTCGTGTTGAACTTAATTAATTATAAAAATGATTAAATAATATATTATAATTAATATGATGTTCATTAAATACATTAATTGGTTAATTTCAATTATAAATTATTCAATTTTTAAATATTTATAATTAAGATTATTATTGATTCTTAATTAATTATTTTTTATCAATGTATTGAATGATGTCTATTGTTTAATTAATTAATCTATTACAATTATATAAGATTGTCATGCTTAATTTTATAAATCCTTAAACCAAACGGCTCCTAACAGTTCTGTTATCTAAATGACTAAAATTGAGCATTATTGAAATCTCAGAGACAAAAGTGTTAGATTTTGAAACATAGAAACCAAATAGAAACTAAATCCAAATCTAAGAAACCAAAAGATATTTTTTTCGAAAAATATAACTATCCACTAATTTTACTTAGAAGGATTAGTAATATATTAGAAAAAATTAGAACTTTTGATATTTCCATGTAGCAAAGTTTTAGAATTTTACTTATCTGTGTAATAAATTTATTTTATTATATCATATTGTAGTTTTCTTTTTAAATATTACCTAGTTCACAAATTTAGTAAAATAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCACCCCCCACCCCCCAAACACTGCTGCCCCATCCCCATCGATTTTCTTCGTGCTCCGGCGAGCAACGGCGGCGTGACACCCACGAACCTGCGACGACTACACGAGCGACCTCCAAGCAGTGGTGTGCGACGACCTGCAGCAGACGCGAACCAGAAACCTCCGACGGCCCGTTCTTCATCAAACAACGTTTTTCTCCTTTTCGATAAGGTTAGACACTTACCCACTCTCATTCGACATTAGATTTGAGTTACCCACTTCTTAATGGCTTCAGATTTGCGGAATTAAGAGCAAGGATTCGAGTCCGTTTGGATAGTTTCAACGGATAAAAGTGCTGTAGCTTAGCTTCTAACCTTTAGAACTTCTCTCTTTTTGGCGTTGGACTGGTATCGGACCTATTCGGATTCTCGTTCAGCAAGGATTCAAATCCGTTTGGTGGTTTGAATCTTTTTGAAATCGTTATAAATATTGTAAATTAATTTATAACTGTTGGAAACTCTTTGTTTGTAGTTTGATACTGACTTAGAGTGTTTGAACTAAGTTTTAAGGTGTTGTCCTTATACGCATTTCTGTAGTCGGATTAAGATTTCGAACTGAGTTTGGCCTCTAAAACATTAATCTTGAGTTTGTTTTAGGAGCCCAGTAGGATTTCCTCAGAGTTGGGATTTCTGGTTGGCGAGTTTAGTTGCTTTCTCTTGTAGGTCAGTGTTTAGCCGCTTCTTATAGAAGTTGCAGGATCTTTTTGATTGAAAGTTGCAGAAGCTTCTTAATCAGGCACCATTTAGTAAGCATTTTTCTGTTCTCTACTTCCCCCAATGATTTTCTCTTGGCTTTGTATATCTTTGAATACAGACCATTTTTCTGAAGGAATTGCACTTACATTTATGCCTTCTGTTTAATCCATTATTTAGTATGTGTGTTTCCTTTCTTTCTTTATTGTTGTAATTCATAGACAGTTGATCATATGTTATGATTTATTCCTGTAATTCCACTTTTAACCACGTAGATGTTTCTTCTCAAACATCATTTTTCAGCTCCTACTATCTCTGTTGCCACCATTACCATAAATTTCTCAAAAAATATGTTGTTGGTCAATGTTTTCTTGGACAGAGCACATAATGAAATCGTAGAGTTATTGAGTGACAAGAAGAGGCCATTAAAGACTTCAAAGTTTTGAAAATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGTGCATCATCAAAAGGCAATAATTCTTCACTCTCACTACTCTCCTTGAAATCAAGCCATGTCTTATGACCATTTGAATTTTAGCTTTTGGCTTCTAAAATTGCTCTTGTTTTTTTCACAGTTTCTTTACAATGATTTTCTTCTTTTGTAACTGATGTGATTTTAGTCAAATTCTAAAAACAAAAATAAGTATTTTCTTTAGTTTTCAAACTTGGCTTAGATTTTGAAACTACCCTAAAAAGTTGATAACAAAAATAAGAAACTCATAGGTGAAAATAGTGTTATAAGCTTAGTTTTAAAAAACCAAATGGTTATCAAATGGGGCATTAGTAATCCCGTGTTTGGTAATGTGATTCATTCATTATAATTTTCTTTCACAATGCAAATTAATATTTGTCGCCAATGAGGATTTGACAAACAATGACTTGTTAATAGCCTTAAATCATAATTTTCATTCATCTAAATAGGACATTTGTTATAGATAAAATTTCATTAGGTAACCTTTATCAATCAATTTTTAAAACTGCAATGCTAAATTGGTAGGCCAATTAGTTGCTTCTTAGGTTCCTACAATATGCAATAACAGAGTAATGAGATATTAGAATTCTAAGCTCTACTATATGCCTCTTACATTCTACTATATGTAAATCAATATGTAAGTCTTCTTAGGTTCTTTAGGCTACAAATTATAGCTCAGCTCAGCTCAGAATCAAGAAGAAACAAACTTTTTCTTCATTCCTCATTTGATCTTTGTTTATAATTGTAATTGACATTGGCTATGAATGCACAGGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA ATGACGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA ATGACGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP Homology
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40 Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40 Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 4.0e-37 Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 0
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida]) HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40 Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus]) HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0
BLAST of Lsi08G001070 vs. NCBI nr
Match: KAG7033478.1 (Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40 Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 0
BLAST of Lsi08G001070 vs. NCBI nr
Match: KAA0039302.1 (Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39 Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39 Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of Lsi08G001070 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26 Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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