Lsi08G001070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G001070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionComplex 1 LYR protein
Locationchr08: 2209129 .. 2216260 (-)
RNA-Seq ExpressionLsi08G001070
SyntenyLsi08G001070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTATGAAAAAACCTAAAATATCATTAAATTATTACTTACAAAAAAGTGCCAAAAAAAAATTATTCCTTTTAGATCCTTTATTGAACTTCAAGATCCACTATTAGTAAATACTACATTCGTACAATTTACAACATATATATATATATATATGTATGTGTGTATATATATATATTTGTAATATTTGTATAAAAAATTTAATTAAACCATTAAATTATAAATTGTGGTGTACAAAGATTTTTTTATTAAAAATTACGTGAATCAAGTTAGTACAAAAAAAATACAAAAATAAAAGTTATTTTGCAATAATTTTCTTTACAAATAAAAGTTATTTTATAGAACGCAATCATAAAATTAAGAGATCTCTTTCAACTATTTGACACGAAAGAAAATACAACAACATTTTCTTAACATGACTTTGTTTATATAAAAATTAAAAAAAAAAAAAAAAAACTATACGACTGAGATATACCTTGAATCAAAGCTATTTTTGGTAACATAGAAAAATAATTATATATAGGGAGGGGAAAGATGTCAATTTATTGTAGAATTTGAAAAGATAAAAGAATAACTTAAAGGTTTTAGAATGTGAAGTGAGTGAATCCATTCATGGTAGAAAATAATAATATTAATAATAACAAATATTTTCTATTGACTTTAATGGTTAGTAGAGAGTGCGTCAATTAATTGATAGCCTTTTCAATTGCCTATGGTTAAGTTATAGAAATTGAATCATTATTAATTGAAATTGATGATATATTTTTAAAATGTAGAAGAACCTAATTTTGTTGTGGTCATGTTTGATTATGGGGATGGTTGAAATTTTTAAAATGTAGAAGGGACAAAGAAGGCAAAAAAGAAAAAAAAAATGATTCTCCCGAATTCCTACTTTTTTATATAGTAAAGTTAATGATCAAAATTTCAAACGGTTTATGTGGTTTGCCTTGTGTTTTAAAATAATGAAAGATTGTCATTGTGAGAGAATTAACATCCTGTTAATTATCCATATTACCTATCGTGCACCATTGTTGGGGGTTTTGAGGGGTGAGTGCGAGAGTGAGTGACAAGGAGAGAGTGAGGAAGAGGGCTAGCGTGTGATGACACTATTGCATTGGATTAGTTGAACGTGAGTGTAAGGGAGGGACGAAGAGTGGGAGTGTGAGGGAGTGAGGAAGAGTCCTAGAGTGTGAGAGCACTATTGTAGGGATAACCTTAATTTCATACTCGCTAAATTTACAAGGGGCAACATGAATATATATCTATATATATGACAAAGTATGTGGAATATATATCTCAATAGAAACAGACTAACATTAAAATATGAGGTATATATTATATAAAACCTTAAATTTGTATTTGCTCTAAGTACATCAGGAATTAATATCATACATATTTGAAATAAACATTGTATATATACATAAATACCATATAAGTGACAGAATAAAATAATATTAATTAAATAATAATCTAAAATACAAAAAAAAAAAACATAACAAAAAATTATTCCTAAATTGAATGGATAAATAACATATATATGAAAGAATAAAATACTATTCATTAAATAATACCCACATTAATTACCAGATATACAATATTAATTGATAATACGATTTTTTTAATATTTAATTGAATATTTGATTGAATTTTTAATTAATATTAAATTGTAAAAATTTTAAAACTTTAATAAGAGAGAGAATGAGTAATAAAGTTATATTTGTCTGAAAATTAAGATAAAATCGAAATATATTACAACTTTAGGATATTTTGTTAAATTTAGTTTGTGAACTAGGTTAAATCTCTAAAATAATTTTTTTTTCCCTAATTTCTCCTTTGAGGAAATTGTACAAATGGTCTAATTTCAGGAGCCCAAATAATTTATTTTTTTTCAATATTTAAGAGTTAATTAGAAAATGTGGGTGGTTTTAAGAAAAATTTGGTAAAAAGGGGTGGTTTTAAAATTATTTAGGAAAATAGGGTAATTTTTTTGTCTTTTAGTGAAACTCTTCAAGTTAGAATGGGACCTACATAATGAAGGAAATAACAATTATTTTTATTATTATTATTTTTTTTTTTACAAATTAATTTACTTTATTTTTCTTTAAGGAAATATAATATCACTTTTTTTTTATATATATAATTGTTATTTTATTATATCATATAATTGTCTTTCATTTATCTAGCAAGATTAAATTTAATTAAAAAAATATTACATATTTAATCATTTTATTTGTAAAATAATAAACTATTAAATATAAATTAAGATAATACCACTATTATTTTTTAATCTTACATCATATTGTAATTTTATTTTAAAGCACGAAAAATTGTAATAGATAGTAAAACTAAGGAAAAAAATCTAAACATATAACACTTCTTTTAAAATGTTTGCAAATATGGCAAATGTTGATAAGTCAACTTTTGAATTTTTTAAAACTTTTAAATTTGTCCTTGTTTGTATGTTAGGGAAGCATGTTTCCTTTTAATTTTAATTTTATCCTTCATTATGAACATAGAATAATTATAGATGATTTATAATCAATTAATTATTTATTATGATTAATTTTTATTACTTCATTCATTATTAATATATCATATTTATATAAAAAAAATTAGTATTATTTATTAACATATCATATTTTTATTTGTTTGTTTCACTTTTTATATAATCTATTGTTTATTAAAATATATTTTCTTATATTATTTAATTAATATTAAAATTACTCGTGTTGAACTTAATTAATTATAAAAATGATTAAATAATATATTATAATTAATATGATGTTCATTAAATACATTAATTGGTTAATTTCAATTATAAATTATTCAATTTTTAAATATTTATAATTAAGATTATTATTGATTCTTAATTAATTATTTTTTATCAATGTATTGAATGATGTCTATTGTTTAATTAATTAATCTATTACAATTATATAAGATTGTCATGCTTAATTTTATAAATCCTTAAACCAAACGGCTCCTAACAGTTCTGTTATCTAAATGACTAAAATTGAGCATTATTGAAATCTCAGAGACAAAAGTGTTAGATTTTGAAACATAGAAACCAAATAGAAACTAAATCCAAATCTAAGAAACCAAAAGATATTTTTTTCGAAAAATATAACTATCCACTAATTTTACTTAGAAGGATTAGTAATATATTAGAAAAAATTAGAACTTTTGATATTTCCATGTAGCAAAGTTTTAGAATTTTACTTATCTGTGTAATAAATTTATTTTATTATATCATATTGTAGTTTTCTTTTTAAATATTACCTAGTTCACAAATTTAGTAAAATAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCACCCCCCACCCCCCAAACACTGCTGCCCCATCCCCATCGATTTTCTTCGTGCTCCGGCGAGCAACGGCGGCGTGACACCCACGAACCTGCGACGACTACACGAGCGACCTCCAAGCAGTGGTGTGCGACGACCTGCAGCAGACGCGAACCAGAAACCTCCGACGGCCCGTTCTTCATCAAACAACGTTTTTCTCCTTTTCGATAAGGTTAGACACTTACCCACTCTCATTCGACATTAGATTTGAGTTACCCACTTCTTAATGGCTTCAGATTTGCGGAATTAAGAGCAAGGATTCGAGTCCGTTTGGATAGTTTCAACGGATAAAAGTGCTGTAGCTTAGCTTCTAACCTTTAGAACTTCTCTCTTTTTGGCGTTGGACTGGTATCGGACCTATTCGGATTCTCGTTCAGCAAGGATTCAAATCCGTTTGGTGGTTTGAATCTTTTTGAAATCGTTATAAATATTGTAAATTAATTTATAACTGTTGGAAACTCTTTGTTTGTAGTTTGATACTGACTTAGAGTGTTTGAACTAAGTTTTAAGGTGTTGTCCTTATACGCATTTCTGTAGTCGGATTAAGATTTCGAACTGAGTTTGGCCTCTAAAACATTAATCTTGAGTTTGTTTTAGGAGCCCAGTAGGATTTCCTCAGAGTTGGGATTTCTGGTTGGCGAGTTTAGTTGCTTTCTCTTGTAGGTCAGTGTTTAGCCGCTTCTTATAGAAGTTGCAGGATCTTTTTGATTGAAAGTTGCAGAAGCTTCTTAATCAGGCACCATTTAGTAAGCATTTTTCTGTTCTCTACTTCCCCCAATGATTTTCTCTTGGCTTTGTATATCTTTGAATACAGACCATTTTTCTGAAGGAATTGCACTTACATTTATGCCTTCTGTTTAATCCATTATTTAGTATGTGTGTTTCCTTTCTTTCTTTATTGTTGTAATTCATAGACAGTTGATCATATGTTATGATTTATTCCTGTAATTCCACTTTTAACCACGTAGATGTTTCTTCTCAAACATCATTTTTCAGCTCCTACTATCTCTGTTGCCACCATTACCATAAATTTCTCAAAAAATATGTTGTTGGTCAATGTTTTCTTGGACAGAGCACATAATGAAATCGTAGAGTTATTGAGTGACAAGAAGAGGCCATTAAAGACTTCAAAGTTTTGAAAATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGTGCATCATCAAAAGGCAATAATTCTTCACTCTCACTACTCTCCTTGAAATCAAGCCATGTCTTATGACCATTTGAATTTTAGCTTTTGGCTTCTAAAATTGCTCTTGTTTTTTTCACAGTTTCTTTACAATGATTTTCTTCTTTTGTAACTGATGTGATTTTAGTCAAATTCTAAAAACAAAAATAAGTATTTTCTTTAGTTTTCAAACTTGGCTTAGATTTTGAAACTACCCTAAAAAGTTGATAACAAAAATAAGAAACTCATAGGTGAAAATAGTGTTATAAGCTTAGTTTTAAAAAACCAAATGGTTATCAAATGGGGCATTAGTAATCCCGTGTTTGGTAATGTGATTCATTCATTATAATTTTCTTTCACAATGCAAATTAATATTTGTCGCCAATGAGGATTTGACAAACAATGACTTGTTAATAGCCTTAAATCATAATTTTCATTCATCTAAATAGGACATTTGTTATAGATAAAATTTCATTAGGTAACCTTTATCAATCAATTTTTAAAACTGCAATGCTAAATTGGTAGGCCAATTAGTTGCTTCTTAGGTTCCTACAATATGCAATAACAGAGTAATGAGATATTAGAATTCTAAGCTCTACTATATGCCTCTTACATTCTACTATATGTAAATCAATATGTAAGTCTTCTTAGGTTCTTTAGGCTACAAATTATAGCTCAGCTCAGCTCAGAATCAAGAAGAAACAAACTTTTTCTTCATTCCTCATTTGATCTTTGTTTATAATTGTAATTGACATTGGCTATGAATGCACAGGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

mRNA sequence

ATGACGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

Coding sequence (CDS)

ATGACGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

Protein sequence

MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP
Homology
[Close]
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLARDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL
Sbjct: 6   LQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 65

Query: 61  LNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE 97
           LNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Sbjct: 66  LNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE 101

[Close]
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVK HIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLARDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.0e-37
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VA+VYR+LLKAVKNHIGK ESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA DY  L
Sbjct: 6   LQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLAHDYALL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIAIDRSEEMKRILGKSAASVGL+LPEAYQP
Sbjct: 66  LNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQP 110

[Close]
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVKNHIGK ESKKHFVDYVAQKFRDK+ILSKPHSVQQEIKLA DYTFL
Sbjct: 6   LQVAKVYRQLLKAVKNHIGKEESKKHFVDYVAQKFRDKTILSKPHSVQQEIKLALDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIA+DRSEEMKRILGKSAASVGL+LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAVDRSEEMKRILGKSAASVGLKLPEPYQP 110

[Close]
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Lsi08G001070 vs. NCBI nr
Match: KAG7033478.1 (Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLARDYTFL 65

Query: 61  LNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY 99
           LNSDLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE Y
Sbjct: 66  LNSDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEDY 103

[Close]
BLAST of Lsi08G001070 vs. NCBI nr
Match: KAA0039302.1 (Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL
Sbjct: 6   LQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 65

Query: 61  LNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE 97
           LNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Sbjct: 66  LNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE 101

[Close]
BLAST of Lsi08G001070 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFL 60
           + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFL
Sbjct: 6   LQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLARDYTFL 65

Query: 61  LNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
           LNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 66  LNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]
BLAST of Lsi08G001070 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 4   AKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS 63
           A+VYR LLKAV  H+GK + K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS
Sbjct: 9   ARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFR-------KNANSEKINLARNYTYLLNS 68

Query: 64  -----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 101
                DLLFSYNIA+DR+EEMKR+L KSAASVGL+LPE Y+P
Sbjct: 69  IHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYEP 103

The following BLAST results are available for this feature:
BLAST of Lsi08G001070 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi08G001070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E21.3e-4084.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1[more]
A0A6J1HS515.0e-4085.71uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294... [more]
A0A5D3BQE55.0e-4091.67Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1EY922.5e-3984.76uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC1114398... [more]
A0A6J1C0V54.0e-3780.95uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
BLAST of Lsi08G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889144.11.6e-4087.62uncharacterized protein LOC120079034 [Benincasa hispida][more]
XP_004144434.12.7e-4084.76uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharact... [more]
KAG7033478.16.1e-4089.80Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argy... [more]
KAA0039302.11.0e-3991.67Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Co... [more]
XP_022967927.11.0e-3985.71uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharac... [more]
BLAST of Lsi08G001070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51960.13.1e-2658.82CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 B... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 3..93
e-value: 3.7E-6
score: 27.6
NoneNo IPR availablePANTHERPTHR35763COMPLEX 1 LYR-LIKE PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G001070.1Lsi08G001070.1mRNA