Lsi07G011510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G011510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Phosphoribulokinase
Location	chr07: 16981033 .. 16983311 (-)
RNA-Seq Expression	Lsi07G011510
Synteny	Lsi07G011510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATGTAAGTTATTTTACCTCCAACTTCTTATGTCAGAATATGAATCCAATAAAGAATATTCCTTATTAGGTCATCTCCGAGCGGTTTCTCAATCAATTAGTTATGCAATACCGATTAACTTTAGGTGTGTTATCAATATCTCCATGTTCATAAATATTTTAAGACATAAACTTCTCAAACCTTTTTTCTTCTTGGGAAAAAGGGGGAAAGGAATTGCATAGATATCTTCTTTTTTACAACATCCTCGCCCTTCCTCCTACTTTGCTTTTTAAAATATTAGTGGAAAGCGAATAACCAAACAAATGAACATGTAGGTAGAAATGGTGTTTAAAACTTGATTTTTAAAAATTAAAAAAAAAAATAAAACAAAATGGTTACCAAAAAGAATAAAACTCTTTGATTATGAAAATACTAATTAATTTTATCTGGAATAAAACAATAAAAATAGCTCTAAATTTCTTCTGTATATTGACTAAAACCGTAACTATTTTCTGTACCACAAGCAAGCTGAAGGAGATTCTGAAAGGGTTAATAACCACTATTGAAGTGTCAAGTGAACTAATATTCACATTTCTTCCCCATTTTTCTTCCTTTTAGTATCCGCGCTAAATCCTTTAATTTTTTTTATATTCGTAAGTGTTCGGACTAGCTTACACGCACCTCAACTAATTTTATGGGACAACCTGCCTGACCCTACAACATTTGGGTGTCAAAAAAAACCCTAGGATATTAAATCCTACGTAGGTGACCACCATAGATTGAATCCATTACCCTTTAGTCCTTTGGTCCTTTTTTTTATGTTCCCACTATCACTAGTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

mRNA sequence

TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

Coding sequence (CDS)

ATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

Protein sequence

MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPISTHITSSTHDGSKSFNLRKC

Homology

[Close]

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot
Match: P27774 (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.4e-72
Identity = 138/173 (79.77%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 15  SVYPSSKTS-LGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIGLAADSGCG 74
           S Y    TS LG +Q++ +F       KR   ++ P +ITC AGD QT+VIGLAADSGCG
Sbjct: 4   SAYTVPTTSHLGFNQKKQLFFCNKSAYKRVSFSSRPCVITCLAGDSQTIVIGLAADSGCG 63

Query: 75  KSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 134
           KSTFMRRLTSVFGGAA+PPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP
Sbjct: 64  KSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 123

Query: 135 RANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPI 187
           RANDFDLMYEQVKALK+G AVEKPIYNHVTGLLD PELIKPPKILVIEGLHP+
Sbjct: 124 RANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPKILVIEGLHPM 176

[Close]

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot
Match: P25697 (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.8e-66
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQ 60
           ++T+ + ++LN T+ +  SS +       + +F+   +     + NT   LITC+   Q+
Sbjct: 3   VSTIYSTQALNSTHFLTSSSSS-------KQVFLYRRQPQTNRRFNT---LITCA---QE 62

Query: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120
           T+VIGLAADSGCGKSTFMRRLTSVFGGAAKPP+GGNPDSNTLISDTTTVICLDDYHSLDR
Sbjct: 63  TIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR 122

Query: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180
            GRKE+ VTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELI+PPKILVI
Sbjct: 123 YGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVI 175

Query: 181 EGLHPI 187
           EGLHP+
Sbjct: 183 EGLHPM 175

[Close]

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot
Match: P26302 (Phosphoribulokinase, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.7e-66
Identity = 130/181 (71.82%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 6   TAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIG 65
           T  SL    +  P+S    G  Q QVIF TT + S+R            S   +Q +VIG
Sbjct: 8   TTTSLRSPCTTIPNS----GFRQNQVIFFTT-RSSRRSNTRHGARTFQVSCAVEQPIVIG 67

Query: 66  LAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKE 125
           LAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRTGRKE
Sbjct: 68  LAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKE 127

Query: 126 KGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHP 185
           KGVTALDP+ANDFDLMYEQVKA+K+G A+EKPIYNHVTGLLDP ELI+PPKI VIEGLHP
Sbjct: 128 KGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPKIFVIEGLHP 183

Query: 186 I 187
           +
Sbjct: 188 M 183

[Close]

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot
Match: P09559 (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-64
Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 22  TSLGRHQEQVIFVTTGKKSKRGKANTT--PWLITCSAGDQQTVVIGLAADSGCGKSTFMR 81
           +S  ++ +QV F      S      TT   ++ITCS   QQT+VIGLAADSGCGKSTFMR
Sbjct: 17  SSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMR 76

Query: 82  RLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFD 141
           RLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDD+HSLDR GRK + VTALDP+ANDFD
Sbjct: 77  RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFD 136

Query: 142 LMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPI 187
           LMYEQVKALK+G AV+KPIYNHV+GLLDPPELI+PPKILVIEGLHP+
Sbjct: 137 LMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPKILVIEGLHPM 181

[Close]

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot
Match: P19824 (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PRKA PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.3e-54
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 42  RGKANTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNT 101
           R  AN     +   A   +TVVIGLAADSGCGKSTFMRR+TS+FGG  KPP GGNPDSNT
Sbjct: 17  RVTANRARRSLVVRADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNT 76

Query: 102 LISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNH 161
           LISD TTVICLDDYH LDR GRK KGVTAL P A +FDLMY QVKALK+G +V+KPIYNH
Sbjct: 77  LISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNH 136

Query: 162 VTGLLDPPELIKPPKILVIEGLHP 186
           V+GL+D PE I+ P ILVIEGLHP
Sbjct: 137 VSGLIDAPEKIESPPILVIEGLHP 160

[Close]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL
Match: A0A6J1HNB8 (Phosphoribulokinase OS=Cucurbita maxima OX=3661 GN=LOC111465210 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVIF TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIFFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL
Match: A0A6J1E6J1 (Phosphoribulokinase OS=Cucurbita moschata OX=3662 GN=LOC111431231 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.3e-94
Identity = 176/187 (94.12%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVI  TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIVFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL
Match: A0A5A7UFL3 (Phosphoribulokinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001190 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQEQ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEQIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL
Match: A0A1S3BK48 (Phosphoribulokinase OS=Cucumis melo OX=3656 GN=LOC103490739 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQEQ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEQIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL
Match: A0A0A0L1R3 (Phosphoribulokinase OS=Cucumis sativus OX=3659 GN=Csa_3G006690 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQE ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEHIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKSGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: XP_038892200.1 (phosphoribulokinase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 1.0e-94
Identity = 177/186 (95.16%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQ 60
           MATVSTAKSLNY N V+ SSKTSLGRHQEQVIF TTGKKSKRGK N  PWLITCSAGDQQ
Sbjct: 1   MATVSTAKSLNYINLVFSSSKTSLGRHQEQVIFFTTGKKSKRGKGNPNPWLITCSAGDQQ 60

Query: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120
           TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR
Sbjct: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120

Query: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180
           TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI
Sbjct: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180

Query: 181 EGLHPI 187
           EGLHP+
Sbjct: 181 EGLHPM 186

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: XP_022965305.1 (phosphoribulokinase, chloroplastic-like [Cucurbita maxima] >XP_022965306.1 phosphoribulokinase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 355.9 bits (912), Expect = 2.3e-94
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVIF TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIFFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: XP_023552122.1 (phosphoribulokinase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.9 bits (912), Expect = 2.3e-94
Identity = 177/187 (94.65%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVIF TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIFFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: KAG7015781.1 (hypothetical protein SDJN02_23419, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 176/187 (94.12%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVI  TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIVFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: XP_022923591.1 (phosphoribulokinase, chloroplastic-like [Cucurbita moschata] >XP_022923592.1 phosphoribulokinase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 176/187 (94.12%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQ 60
           MAT+STAK LNYTNSV+ SS+TSLGRHQEQVI  TTGK+ SKRGKA+TTPWLITCSAGDQ
Sbjct: 1   MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIVFTTGKQASKRGKASTTPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. TAIR 10
Match: AT1G32060.1 (phosphoribulokinase )

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-67
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQ 60
           ++T+ + ++LN T+ +  SS +       + +F+   +     + NT   LITC+   Q+
Sbjct: 3   VSTIYSTQALNSTHFLTSSSSS-------KQVFLYRRQPQTNRRFNT---LITCA---QE 62

Query: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120
           T+VIGLAADSGCGKSTFMRRLTSVFGGAAKPP+GGNPDSNTLISDTTTVICLDDYHSLDR
Sbjct: 63  TIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR 122

Query: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180
            GRKE+ VTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELI+PPKILVI
Sbjct: 123 YGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVI 175

Query: 181 EGLHPI 187
           EGLHP+
Sbjct: 183 EGLHPM 175

The following BLAST results are available for this feature:

BLAST of Lsi07G011510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27774	3.4e-72	79.77	Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2...	[more]
P25697	2.8e-66	70.97	Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g32060 ...	[more]
P26302	4.7e-66	71.82	Phosphoribulokinase, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1	[more]
P09559	3.4e-64	74.25	Phosphoribulokinase, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19824	9.3e-54	72.22	Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PRKA ...	[more]

BLAST of Lsi07G011510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNB8	1.1e-94	94.65	Phosphoribulokinase OS=Cucurbita maxima OX=3661 GN=LOC111465210 PE=3 SV=1	[more]
A0A6J1E6J1	7.3e-94	94.12	Phosphoribulokinase OS=Cucurbita moschata OX=3662 GN=LOC111431231 PE=3 SV=1	[more]
A0A5A7UFL3	1.5e-91	91.98	Phosphoribulokinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G...	[more]
A0A1S3BK48	1.5e-91	91.98	Phosphoribulokinase OS=Cucumis melo OX=3656 GN=LOC103490739 PE=3 SV=1	[more]
A0A0A0L1R3	7.5e-91	91.44	Phosphoribulokinase OS=Cucumis sativus OX=3659 GN=Csa_3G006690 PE=3 SV=1	[more]

BLAST of Lsi07G011510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892200.1	1.0e-94	95.16	phosphoribulokinase, chloroplastic-like [Benincasa hispida]	[more]
XP_022965305.1	2.3e-94	94.65	phosphoribulokinase, chloroplastic-like [Cucurbita maxima] >XP_022965306.1 phosp...	[more]
XP_023552122.1	2.3e-94	94.65	phosphoribulokinase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG7015781.1	1.5e-93	94.12	hypothetical protein SDJN02_23419, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923591.1	1.5e-93	94.12	phosphoribulokinase, chloroplastic-like [Cucurbita moschata] >XP_022923592.1 pho...	[more]

BLAST of Lsi07G011510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32060.1	2.0e-67	70.97	phosphoribulokinase	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006082	Phosphoribulokinase	PRINTS	PR00478	PHRIBLKINASE	coord: 68..85 score: 60.0 coord: 177..195 score: 35.09
IPR006083	Phosphoribulokinase/uridine kinase	PFAM	PF00485	PRK	coord: 63..186 e-value: 1.4E-39 score: 135.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 58..196 e-value: 2.6E-30 score: 107.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 60..186
None	No IPR available	PANTHER	PTHR10285:SF150	PHOSPHORIBULOKINASE	coord: 5..187
None	No IPR available	PANTHER	PTHR10285	URIDINE KINASE	coord: 5..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011510.1	Lsi07G011510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008974	phosphoribulokinase activity
molecular_function	GO:0016301	kinase activity