Lsi07G002840 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTCAATATTCGGAGCTTCTTCTTCTTCCTATTCTACAAAGAGCTTATTCTTCAGCTCTGCAAAATTAATCTTTCTCTCCGGCCTAATCTTTCTCTCCATCTACCTGTGGATTGAGGCTTCAGTTCAAGCGAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGTGAGGTTCACTTCGCTACTGTGATTCTTTTCTTTTTTATGCTCGGAGAAATTTTGTTCTATGTTCGTCTGCTGACTTGGCTACAATGAATATTTTATGATAATCAATGCAAGTTGATTTGCTTTGCTATGGAGAGCGGGAGTGTTGGTTTGAGAGTATTGAATTTCTTGGAAATGAATTGGATTGCTCTCGATTTTCTTTCTTCGGTTATGGCGTCGCTTGATGCTGTGCGTTTGTTTGTTTTGCGACTGTGATAGGAGATTCTTCAACTTCACTCGCGACTATCCGATTTTGTAGTGGTGAATTAATTAGGATGAACAGTTCTCAAATTAGGATAATTACACTAGATTATGGAAGTAATTTTATTAGTCCTTTATTTGAGAATGATGGGTTTTTTAAGGTTACTTAGAGTTACTGCTCACAGATTCATTGACGTTTCATGCTGGTGATTCAGATTCCACTACGGATTGATTCTTTCAGATTAATGAAGTTGTCAAGATTTGCAGTCGGAATCTTGGCGTAATTGTGGCTATAAACTAGTTTCGCATTCAAAGAGTTTTATTAGATTAATTGAGATGTTAGCATTTTAGGACTAAAATTTCAGCAACTAACACATAATTGGACAGTATATAATGATAATCAGAGTAAAACATAATCTCTCTCCTCATATTATTGAATGAGTCAAAACAGATACTTATATGTGAGATTACAATGAGAGAGAGAAGATACAAAACTATTTAATTAACCATTAACAGAACAAAACCAACTCAGCACCTATAAACAAATATATTCTATTAGTACCTTTATTTATGTTTTATACTGCAATTAAAAAGGAAAGTTACGACATGCTAGTTTCTGGAATATCGATTGTCTATCGACTCTTTTCTATATCTGCAAAATGTATAAGGTAATAGCTGTACGTGTATTCCTCCCTTTCCCTCTCTATTCTCATAACAAATACTGACAAATAATAGGAATTGTTGATCTTCTTGTTTGTTTATAAAGAAGAAAATAACACTTCTGAGATACTGAATTTGAAAGAAAACACTTAAAAAAAGTAAAGAAAAGGAAAAATAAAATAACAAAAATTTTAGGATGAAGTTTTGTAATTCTCCTTTTTGTATTTTATAGTGCTGAAAGTTTGGGGATTTCATTTGAATTTTTCAATACTATCATGCTGCTAGCCTCAAATCTCGTTTTGTTGGTTAATACTTGATTCAAGCCATTGAGATAGGACTGAAAATTGCTTCTTTATGTAGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGGTAGTCCTGTCTCTAAATATTTTTTATCAATGTTAAAATCTTCATGGTTCATTCGAGGTTAGCTGAAAAAACAAGTTACTGAGAATTTATCTTTTTTTTTTTATATCCGTGAGTGTCCGAGCCAGCTTATGCGCACCTCGACTAATCTCACGGGACAATCCACCTGACCCTACAACATTGGTAGGTGGCTACCATGGATTGAACCCCTGACCTCTTAGCCATTTATTGAGACTATGTCTCCTTTTTTTATCACTAGGCCAACCCATGATGGTTTTAAGAATTTATCTAATTAGGAATAGGCCTTATATTATTGAATCATACTATGGAGTAGCTCATGATTTTCGGTCTCAGAATCTACTTCTCTTTCTCAAGGAAAATGTAAAACTAGGGATAGATGACCACTGTAGTTGCAGGGGACCCAAAAAATGTTGGGATGAATTATCCCTTAAAACGACCATGATATCTTTCACAGCTATAACAGTTATTGGACCTATTTCCAACTTCTAGGATCCTTCCATTTGTTTTTCCTGTTTCCTAATAAACTCAGTTCTTCAGTTTGGAGAGACAAGGTTTCCTATTTTTTTTGCTGATTCCTAATTGCTGTACACCAACATTGAAGAATCTCATTCAATGTGATGTAGAGAGTTTTGGCATAATTGGTTTCTTTCTTTATTTATTTATTTGTTATTATGTAGCTAGTTATTAATTATCTTATAAATATATTTTTTTTTTGTGAGTAAAGATTTATTTTGAGGACTCGTTGTGAGAGCTAAGGCTTCACCAAAATGATTAACTTATTTTTCTAATGCTTGAAACACTCATGTGTTTTTACCTAGGATTGTGGAACTTGATTAACTAGAAAGTCTTATGTCTTGACTTCACTTTTATAGGGCTTTTTTTTTTTCCCAGTCGGTTTCCTCTTACTCTATTTATTTTCTTGGGGTTCCTTTTCCCCTCTATCTTAATTTAGTGGCCTTAGTATTTTTGTAAATCTTAGTAAAAGCCATTGTGAATCGTCACAAATTTTTGAAGCGACCTGCCTCATTTGAATTTCTCTCGCTCACAATGCATTTTGCAGTCCCTTATTGATCTTGTGGTTAAAGACATTAGTTCTTATTTTTCTCCAACTTTCTGCTTTCACTTCCCCCAAATGGTTTTTACCCCATTGTTTGCTAGATGGAAAGCAATGCTATTGGTAAATTAAGTGAAAAATGAAAACTGTGTTGGCCCTAACTTTGTCTTAGACTATGTTCTTGATGTGGTTTTGTTTGATGTAAACCTTAACCCTGTATCTATATGAAGGTCTCTATTTCAAGGCACAATTTTCTGTCGATTTTCACTTTCATTAAGTGACTACAATTGATTTTAGTCACCAAATGAAATTCTAGATCCCAGGTATATTGTTGTTGCAAATGGGCAAATAAAAAGTTCCAGTTTCAAAGATCCTTCAATCTTCTACTGGTCGGTTTATTCTCTAGCATGTCTCCCCAGTCCCCAAAATACTGGATCACTTCGAAATTTGAACTAATATTCAATTTATGTAGGATTTTGTACCAAAAAATCAAATGAGAAAAGGATGATCGACTAATTCGTGGGCCTTGCAATAAACAGAACACTAATACAATGAGAGGGCTCCGTGTTTAGCAACAAATTGAGAGAAGTACGTGAATAATTAAGACCTTAAAATAAGATTTGCAAATTGTGAGAAGCATGTAAGCTAATAGGTTCCTAAGATGAATATAAGAATTCTTCTCTTTCCCCTTTTGTTTTCTCCTTCTTTGGGCTACTACATAGTACATACCCTTCAAATCTTTAACATCGACATCACCTTTCTTATACATTCCTTTTCCTTTACATCCTGATGACTAAATTTTAATGAACTATTTTCCATGGTTACCAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGTCCATACCATTTCTTCGTTTAAGAAATTATGATATGTTATTTTTAGTTTAATCATCAATATTAATCTTATCACAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAAAAAAGGTAACCGTAGCTATATTTCTATCGTATGTAATTAATACATTGATTACTTAATATCAAAACATTATTCCCTCATTTTCTATCATCTTCTACAGAGCTGATCGATTAAATGCATTCACTCCTTTCACTTGGGCTTCCTCTAACTTCCTGTAAGTTGCTTCTCACTTAATGGGCAAAGTGCAACATCATCCATTACATTGCTTGTACAAAAAAGAAAAAACAAAGATCAGAAAATGGTGGGGAAAAACCCTTCTGCCAGTTTAGCTGTGTCATAAATTACTTGTATAAATAAAGATTCAATGAAAGTTTGAAAGCACAGTGATCGAACGTCGTATAGAGGGAAAAAAAACGCAATATTGTGGAATGGTGCTTTCTTGGTGTTTTTAGGTGTTTTTCCTTTTAAATTTGGTTTGATTACGAGCTTACCTAAAGATTTTTTTAGGATGTGTGGTGTGCATTGCCACATTGGTATATTTTTAGTTAAATCTTGTTTTGGTTCA ATTCAATATTCGGAGCTTCTTCTTCTTCCTATTCTACAAAGAGCTTATTCTTCAGCTCTGCAAAATTAATCTTTCTCTCCGGCCTAATCTTTCTCTCCATCTACCTGTGGATTGAGGCTTCAGTTCAAGCGAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAAAAAAGAGCTGATCGATTAAATGCATTCACTCCTTTCACTTGGGCTTCCTCTAACTTCCTGTAAGTTGCTTCTCACTTAATGGGCAAAGTGCAACATCATCCATTACATTGCTTGTACAAAAAAGAAAAAACAAAGATCAGAAAATGGTGGGGAAAAACCCTTCTGCCAGTTTAGCTGTGTCATAAATTACTTGTATAAATAAAGATTCAATGAAAGTTTGAAAGCACAGTGATCGAACGTCGTATAGAGGGAAAAAAAACGCAATATTGTGGAATGGTGCTTTCTTGGTGTTTTTAGGTGTTTTTCCTTTTAAATTTGGTTTGATTACGAGCTTACCTAAAGATTTTTTTAGGATGTGTGGTGTGCATTGCCACATTGGTATATTTTTAGTTAAATCTTGTTTTGGTTCA ATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAA MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS Homology
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.8e-23 Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22 Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22 Identity = 64/132 (48.48%), Postives = 78/132 (59.09%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q640W6 (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22 Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 2.3e-22 Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1ETK8 (ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437602 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57 Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A0A0KVJ9 (UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1J306 (ubiquitin domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482928 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 7.5e-56 Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1CN58 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012801 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55 Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1J725 (ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 8.3e-55 Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_038882682.1 (ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882701.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882708.1 ubiquitin domain-containing protein 2-like [Benincasa hispida]) HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58 Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_022931411.1 (ubiquitin domain-containing protein 2-like [Cucurbita moschata]) HSP 1 Score: 231.5 bits (589), Expect = 3.7e-57 Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_023552879.1 (ubiquitin domain-containing protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56 Identity = 110/115 (95.65%), Postives = 114/115 (99.13%), Query Frame = 0
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_004137230.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN53573.1 hypothetical protein Csa_014886 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 5.3e-56 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_022984742.1 (ubiquitin domain-containing protein 2-like [Cucurbita maxima]) HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55 Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 202.2 bits (513), Expect = 2.2e-52 Identity = 92/110 (83.64%), Postives = 104/110 (94.55%), Query Frame = 0
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 176.8 bits (447), Expect = 1.0e-44 Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 0
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 172.9 bits (437), Expect = 1.4e-43 Identity = 81/112 (72.32%), Postives = 99/112 (88.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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