Lsi07G002840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G002840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUbiquitin domain-containing protein
Locationchr07: 3061772 .. 3065994 (+)
RNA-Seq ExpressionLsi07G002840
SyntenyLsi07G002840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAATATTCGGAGCTTCTTCTTCTTCCTATTCTACAAAGAGCTTATTCTTCAGCTCTGCAAAATTAATCTTTCTCTCCGGCCTAATCTTTCTCTCCATCTACCTGTGGATTGAGGCTTCAGTTCAAGCGAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGTGAGGTTCACTTCGCTACTGTGATTCTTTTCTTTTTTATGCTCGGAGAAATTTTGTTCTATGTTCGTCTGCTGACTTGGCTACAATGAATATTTTATGATAATCAATGCAAGTTGATTTGCTTTGCTATGGAGAGCGGGAGTGTTGGTTTGAGAGTATTGAATTTCTTGGAAATGAATTGGATTGCTCTCGATTTTCTTTCTTCGGTTATGGCGTCGCTTGATGCTGTGCGTTTGTTTGTTTTGCGACTGTGATAGGAGATTCTTCAACTTCACTCGCGACTATCCGATTTTGTAGTGGTGAATTAATTAGGATGAACAGTTCTCAAATTAGGATAATTACACTAGATTATGGAAGTAATTTTATTAGTCCTTTATTTGAGAATGATGGGTTTTTTAAGGTTACTTAGAGTTACTGCTCACAGATTCATTGACGTTTCATGCTGGTGATTCAGATTCCACTACGGATTGATTCTTTCAGATTAATGAAGTTGTCAAGATTTGCAGTCGGAATCTTGGCGTAATTGTGGCTATAAACTAGTTTCGCATTCAAAGAGTTTTATTAGATTAATTGAGATGTTAGCATTTTAGGACTAAAATTTCAGCAACTAACACATAATTGGACAGTATATAATGATAATCAGAGTAAAACATAATCTCTCTCCTCATATTATTGAATGAGTCAAAACAGATACTTATATGTGAGATTACAATGAGAGAGAGAAGATACAAAACTATTTAATTAACCATTAACAGAACAAAACCAACTCAGCACCTATAAACAAATATATTCTATTAGTACCTTTATTTATGTTTTATACTGCAATTAAAAAGGAAAGTTACGACATGCTAGTTTCTGGAATATCGATTGTCTATCGACTCTTTTCTATATCTGCAAAATGTATAAGGTAATAGCTGTACGTGTATTCCTCCCTTTCCCTCTCTATTCTCATAACAAATACTGACAAATAATAGGAATTGTTGATCTTCTTGTTTGTTTATAAAGAAGAAAATAACACTTCTGAGATACTGAATTTGAAAGAAAACACTTAAAAAAAGTAAAGAAAAGGAAAAATAAAATAACAAAAATTTTAGGATGAAGTTTTGTAATTCTCCTTTTTGTATTTTATAGTGCTGAAAGTTTGGGGATTTCATTTGAATTTTTCAATACTATCATGCTGCTAGCCTCAAATCTCGTTTTGTTGGTTAATACTTGATTCAAGCCATTGAGATAGGACTGAAAATTGCTTCTTTATGTAGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGGTAGTCCTGTCTCTAAATATTTTTTATCAATGTTAAAATCTTCATGGTTCATTCGAGGTTAGCTGAAAAAACAAGTTACTGAGAATTTATCTTTTTTTTTTTATATCCGTGAGTGTCCGAGCCAGCTTATGCGCACCTCGACTAATCTCACGGGACAATCCACCTGACCCTACAACATTGGTAGGTGGCTACCATGGATTGAACCCCTGACCTCTTAGCCATTTATTGAGACTATGTCTCCTTTTTTTATCACTAGGCCAACCCATGATGGTTTTAAGAATTTATCTAATTAGGAATAGGCCTTATATTATTGAATCATACTATGGAGTAGCTCATGATTTTCGGTCTCAGAATCTACTTCTCTTTCTCAAGGAAAATGTAAAACTAGGGATAGATGACCACTGTAGTTGCAGGGGACCCAAAAAATGTTGGGATGAATTATCCCTTAAAACGACCATGATATCTTTCACAGCTATAACAGTTATTGGACCTATTTCCAACTTCTAGGATCCTTCCATTTGTTTTTCCTGTTTCCTAATAAACTCAGTTCTTCAGTTTGGAGAGACAAGGTTTCCTATTTTTTTTGCTGATTCCTAATTGCTGTACACCAACATTGAAGAATCTCATTCAATGTGATGTAGAGAGTTTTGGCATAATTGGTTTCTTTCTTTATTTATTTATTTGTTATTATGTAGCTAGTTATTAATTATCTTATAAATATATTTTTTTTTTGTGAGTAAAGATTTATTTTGAGGACTCGTTGTGAGAGCTAAGGCTTCACCAAAATGATTAACTTATTTTTCTAATGCTTGAAACACTCATGTGTTTTTACCTAGGATTGTGGAACTTGATTAACTAGAAAGTCTTATGTCTTGACTTCACTTTTATAGGGCTTTTTTTTTTTCCCAGTCGGTTTCCTCTTACTCTATTTATTTTCTTGGGGTTCCTTTTCCCCTCTATCTTAATTTAGTGGCCTTAGTATTTTTGTAAATCTTAGTAAAAGCCATTGTGAATCGTCACAAATTTTTGAAGCGACCTGCCTCATTTGAATTTCTCTCGCTCACAATGCATTTTGCAGTCCCTTATTGATCTTGTGGTTAAAGACATTAGTTCTTATTTTTCTCCAACTTTCTGCTTTCACTTCCCCCAAATGGTTTTTACCCCATTGTTTGCTAGATGGAAAGCAATGCTATTGGTAAATTAAGTGAAAAATGAAAACTGTGTTGGCCCTAACTTTGTCTTAGACTATGTTCTTGATGTGGTTTTGTTTGATGTAAACCTTAACCCTGTATCTATATGAAGGTCTCTATTTCAAGGCACAATTTTCTGTCGATTTTCACTTTCATTAAGTGACTACAATTGATTTTAGTCACCAAATGAAATTCTAGATCCCAGGTATATTGTTGTTGCAAATGGGCAAATAAAAAGTTCCAGTTTCAAAGATCCTTCAATCTTCTACTGGTCGGTTTATTCTCTAGCATGTCTCCCCAGTCCCCAAAATACTGGATCACTTCGAAATTTGAACTAATATTCAATTTATGTAGGATTTTGTACCAAAAAATCAAATGAGAAAAGGATGATCGACTAATTCGTGGGCCTTGCAATAAACAGAACACTAATACAATGAGAGGGCTCCGTGTTTAGCAACAAATTGAGAGAAGTACGTGAATAATTAAGACCTTAAAATAAGATTTGCAAATTGTGAGAAGCATGTAAGCTAATAGGTTCCTAAGATGAATATAAGAATTCTTCTCTTTCCCCTTTTGTTTTCTCCTTCTTTGGGCTACTACATAGTACATACCCTTCAAATCTTTAACATCGACATCACCTTTCTTATACATTCCTTTTCCTTTACATCCTGATGACTAAATTTTAATGAACTATTTTCCATGGTTACCAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGTCCATACCATTTCTTCGTTTAAGAAATTATGATATGTTATTTTTAGTTTAATCATCAATATTAATCTTATCACAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAAAAAAGGTAACCGTAGCTATATTTCTATCGTATGTAATTAATACATTGATTACTTAATATCAAAACATTATTCCCTCATTTTCTATCATCTTCTACAGAGCTGATCGATTAAATGCATTCACTCCTTTCACTTGGGCTTCCTCTAACTTCCTGTAAGTTGCTTCTCACTTAATGGGCAAAGTGCAACATCATCCATTACATTGCTTGTACAAAAAAGAAAAAACAAAGATCAGAAAATGGTGGGGAAAAACCCTTCTGCCAGTTTAGCTGTGTCATAAATTACTTGTATAAATAAAGATTCAATGAAAGTTTGAAAGCACAGTGATCGAACGTCGTATAGAGGGAAAAAAAACGCAATATTGTGGAATGGTGCTTTCTTGGTGTTTTTAGGTGTTTTTCCTTTTAAATTTGGTTTGATTACGAGCTTACCTAAAGATTTTTTTAGGATGTGTGGTGTGCATTGCCACATTGGTATATTTTTAGTTAAATCTTGTTTTGGTTCA

mRNA sequence

ATTCAATATTCGGAGCTTCTTCTTCTTCCTATTCTACAAAGAGCTTATTCTTCAGCTCTGCAAAATTAATCTTTCTCTCCGGCCTAATCTTTCTCTCCATCTACCTGTGGATTGAGGCTTCAGTTCAAGCGAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAAAAAAGAGCTGATCGATTAAATGCATTCACTCCTTTCACTTGGGCTTCCTCTAACTTCCTGTAAGTTGCTTCTCACTTAATGGGCAAAGTGCAACATCATCCATTACATTGCTTGTACAAAAAAGAAAAAACAAAGATCAGAAAATGGTGGGGAAAAACCCTTCTGCCAGTTTAGCTGTGTCATAAATTACTTGTATAAATAAAGATTCAATGAAAGTTTGAAAGCACAGTGATCGAACGTCGTATAGAGGGAAAAAAAACGCAATATTGTGGAATGGTGCTTTCTTGGTGTTTTTAGGTGTTTTTCCTTTTAAATTTGGTTTGATTACGAGCTTACCTAAAGATTTTTTTAGGATGTGTGGTGTGCATTGCCACATTGGTATATTTTTAGTTAAATCTTGTTTTGGTTCA

Coding sequence (CDS)

ATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCGATAAAGAAGATACGGAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGGAAAGAGATTTGGGACGCACTACGAGCAGCTGCTGAAGCTGAGCTTTCTCTTGCTCAAGCAATTATAGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGCGCGAAATATGAACTGCCCAACTATGTTTTGAGTGAGCCGACCAATTTGATTCGTAACAGTTCATAA

Protein sequence

MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS
Homology
[Close]
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-23
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 0 

Query: 4   AGSSQTNGDGS--------IKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEI 63
           +GS   N DG+          K  KPK WK   P+T  QL   RDEFWDTAP + GRKEI
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEI 71

Query: 64  WDALRAAAEA----ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLI 116
           WDAL+AAA+A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y LS P N+I
Sbjct: 72  WDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 131

[Close]
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 4   AGSSQTNGDGS---------IKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKE 63
           +GS   N DG+         +KK  KPK WK   P+T  QL   RDEFWDTAP + GRKE
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKK-EKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNL 116
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINM 131

[Close]
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 64/132 (48.48%), Postives = 78/132 (59.09%), Query Frame = 0 

Query: 2   GCAG--SSQTNGDGS------------IKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAP 61
           GC G   ++T G GS            +KK  KPK WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKK-DKPK-WKSDYPMTEGQLRSKRDEFWDTAP 62

Query: 62  HYGGRKEIWDALRAAAEA----ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYV 116
            + GRKEIWDAL+AAA A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y 
Sbjct: 63  AFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYC 122

[Close]
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q640W6 (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 4   AGSSQTNGDGS---------IKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKE 63
           +GS   N DG+         +KK  KPK WK   P+T  QL   RDEFWDTAP + GRKE
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKK-DKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNL 116
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINM 131

[Close]
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-22
Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 0 

Query: 5   GSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+    G     K  KPK WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+I   S
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEKS 134

[Close]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1ETK8 (ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437602 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A0A0KVJ9 (UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT  DGSIKKIRKPKSWKHPQPITRSQL QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAI+DSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1J306 (ubiquitin domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482928 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.5e-56
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNG+GSIKKIRKPKSWKHPQPITR QL+QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVI+QNADLTICYDERG KYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1CN58 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012801 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSS+TNGDGS K+IRKPK WKHPQPITRSQLMQLRDEFWDTAPHYGGR EIWDALR
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAE SLAQAIIDSAGVIVQNADLT+CYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match: A0A6J1J725 (ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.3e-55
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGC GSSQTNGDGS KKIRKPK WKHPQPITRSQL QLRDEFWDTAPHYGGR EIWDALR
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVIVQNADLT+CYDERGAKYELP YVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPKYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_038882682.1 (ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882701.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882708.1 ubiquitin domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_022931411.1 (ubiquitin domain-containing protein 2-like [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 3.7e-57
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_023552879.1 (ubiquitin domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 110/115 (95.65%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNGDGSIKKI KPKSWKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGDGSIKKIGKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_004137230.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN53573.1 hypothetical protein Csa_014886 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.3e-56
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT  DGSIKKIRKPKSWKHPQPITRSQL QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAI+DSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. NCBI nr
Match: XP_022984742.1 (ubiquitin domain-containing protein 2-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQTNG+GSIKKIRKPKSWKHPQPITR QL+QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRNSS 116
           AAAEAELSLAQAIIDSAGVI+QNADLTICYDERG KYELPNYVLSEPTNLIR+SS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-52
Identity = 92/110 (83.64%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+Q+  DGS+KKIRKPK WKH QPIT+++LM+LR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNL 111
           AAAEA++SLAQAI+DSAGVIVQN DLT+CYDERGAKYELP YVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-44
Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSI--KKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDA 60
           MGC GSSQ   +G    KKI KPK W H +PITR+QL  +R+EFWDT+PHYGG++EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 61  LRAAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR 113
           LRAAAEA+L LAQ I+DSAGVIVQN DLT+C+DERGA+YELP YVLSEPTNLIR
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIR 114

[Close]
BLAST of Lsi07G002840 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-43
Identity = 81/112 (72.32%), Postives = 99/112 (88.39%), Query Frame = 0 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGC+ SS+T  +G  +KIR+PK+WKHPQPI+R +L Q+R+EFWDTAPHYGG+KEIWDALR
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 61  AAAEA-ELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLI 112
           AAAE  +LSLAQ I++SAGVIVQN DLTICYDE+G+KYELP YVL +P+NLI
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

The following BLAST results are available for this feature:
BLAST of Lsi07G002840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DG432.8e-2350.00Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1[more]
Q6PGH01.1e-2249.60Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=... [more]
Q4V8W71.4e-2248.48Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1[more]
Q640W61.8e-2249.60Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV... [more]
Q5EAE32.3e-2250.43Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1[more]
BLAST of Lsi07G002840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ETK81.8e-5796.52ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A0A0KVJ92.6e-5695.65UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV... [more]
A0A6J1J3067.5e-5693.91ubiquitin domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1CN582.8e-5593.04ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1J7258.3e-5593.04ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=366... [more]
BLAST of Lsi07G002840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882682.13.3e-5899.13ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 u... [more]
XP_022931411.13.7e-5796.52ubiquitin domain-containing protein 2-like [Cucurbita moschata][more]
XP_023552879.12.4e-5695.65ubiquitin domain-containing protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_004137230.15.3e-5695.65ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN53573.1 hypothetical... [more]
XP_022984742.11.5e-5593.91ubiquitin domain-containing protein 2-like [Cucurbita maxima][more]
BLAST of Lsi07G002840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G53400.12.2e-5283.64Ubiquitin domain-containing protein [more]
AT5G45740.11.0e-4471.93Ubiquitin domain-containing protein [more]
AT1G16960.11.4e-4372.32Ubiquitin domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032752DC-UbP/UBTD2, N-terminal domainPFAMPF16455UBDcoord: 16..112
e-value: 2.6E-35
score: 120.6
IPR038169DC-UbP/UBTD2, N-terminal domain superfamilyGENE3D1.20.225.20coord: 31..104
e-value: 1.6E-27
score: 97.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR13609:SF25BINDING PROTEIN, PUTATIVE-RELATEDcoord: 1..112
IPR039869Ubiquitin domain-containing protein 1/2PANTHERPTHR13609UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDcoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G002840.1Lsi07G002840.1mRNA