Lsi07G000200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G000200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear transport factor 2
Location	chr07: 264134 .. 267003 (+)
RNA-Seq Expression	Lsi07G000200
Synteny	Lsi07G000200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAGCAAAAGTGGTGGCGTTAGAGTTACGCGAATTACTTTTCAAAACACCAAAAATAATAATAATATATTTTAACAAATAAAAATAAAAAAACCCCAGATCGGACGATTCTAACCCTCGATATTCGTCGACACTATAAATTCCGAATTAACCCTCCTCCCTTCTGGAACCCTCGGCTAACGCTGTCGTCTCCATTTGTTTCTCTCGAAAACCCGGCGTCGTTCCCAAGCAGGGCGGAAGAAAGTGGGTCTCTGTTAGCTCTTTCCCAGCGGCGGATTTGAACGTTATCGGAATGGATCCCGACGCCGTGGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAGGACAATTCCATGTTGACATTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTTCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTCGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTTGTCTTCGTCAGCGGCAATCTTCAGCTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTAATGCGTTTCTTTTTTTTTTAATGAAGACGTTGCTGGATTTGTTTCTGTTTGTGAGCCTTGTGGTTATTGATGTTGGATTTATGGATTCATCTTGGTTGGATCTAGTGTTCTTTTGGAGTTATAGAGTTGGACTTCCTTGATTGAATTCGCGTTGTGATTATCTAATTTATGCGTTTGTGCACTTTAATTATCGTTAGGCTTTGTGTAGTTTGCGTCGTCTTTGTTCTTGTAGATCTAGGGGTTTTCGTCGGAATTATTTGTATTATATTGGGACGGCGAGACTATGGATCAAGCTTTGGATTTTGATGTGCTTATGTTGCTGCTTCAATATGTCTTAGATGATTTATGTTTTTCTTTGGGGTTCTTGTTTCTGAAGAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTAATTTACCAGCATCGGCCTAGTGAGAATGAGAAAAGAAAAGGAAAGGTGCTTGATTATTTAACTCGAAAAGTTGATGCTAAACTCATAACTTATTTTAAGTTCATGGTTGCTTTTTCATTTACGGGGATTTTTTAGGTGACTGATAAGCTTTCTCCCGCTCTTCTGTTCGAACACAAGAATGCCACTGGGTTCCTTCCATGTGTCTTTTTTCCCCTAGTGTATATGCTTGTTACAATTTCCCTGGCTTATTCTGATGATATGGTTGAAACAATGACGAATTGAATCTGTGATCATGATCTATATTCTCGTTTAGAATTTGGTACTTCTAGATATATCATTTTTGTAGGAATGCAAAAATAATGAATTTTTATCACTGTAGTGTGTTCGTCATTAACTTTTTCTAATTCAAAGCATTTTCAAATTACATATGCAATGAAATTTATTTTAGAATGATGGGTCATGACTCTATTGTTAAAATCTATTATATGAATTACTTTTCTGAATATTAATAGCCATTGAGAATGTGATGCATAGGCATTTCTTTTCAGAATTTATTGTAACTACAATCTGTACTTATGGCTAAATTTGAAAACTGAATTGTTTTGTGTACATTTCTTTGTTGTTGTTGTTAGCTGTGGATCTATGTTTTTGTAGAATTTTGACTTATATACTAATACTAGTTGCTTAGGATGACTTTTCTTAGAGTATTTGTTATATAGGTTGTACAATTGTGACTTCTAAAGTACTTTAGTTGCTTTCATCCACATATCCTGCAGTTAAATTATTTAACCAAAATGTATTTACGATATGTTTTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCTTGAAGTTGAGAGTAATCCATGGTATTGGGAAGCCTGGAATGTCAGGTCACTCAACCAGTTTGTTTATCAACGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATCGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATAGTCCCTATTCTATCTATTCAAATGCAAGTGTACTATATGGTATTATACATGTCGAAAATCACAACTTTAAACTTCTACGTCATGGAAATTGAAATATGAATGTCCGAAATGAAAGCAGTACCGGCACTCTACGCCCAAAAAATACAGGGTTTCAATGTGATCTTTTCCTTTAAACAACTAATATATAGATACAAAGTTGTTGAAATGTTTGGTTGTGCCTAGAAAATTAAATCAAAGAGCTGCACATCCAATGGAACAACTTGATGAAGCTACTGTTTTTGTGGATGATTGATTGGTGGCAATAAATCAGGTATTAATTTCCAAGTCAAACTCTGGTAGGGTCACATGAGGTAGGGCAGGCATATTAAGATGAGGCAATTCAGTAGCTTCAATCTGTTGTTGTATTGCTGAAGTTGTCTTCCTTTTCAGAATTGTACCCAGGGATTTGAATGGATTGCTCAAGCCATCTCTGAGTTTCAAAATGAAAGACACCTCAGAGATTTGCCAAGCAACAGTGAGGATAATCATTGCTGAAACAAGGCAGTGAGTTATAAAATTCTGCCTCTTCACTTCTTTTAGCTCTTTCACGATCTCCTTCTCTGTTTTCACTATGCTTCCATTTCTTTCCACATTTTCACTTTGAGGCTCTAAGTCTGTCTCAATTATTTTCTCATCCTCTTGCTGAGATGAGATTTGGGAGTGGTTGAGCCTCTGTTCTTCTCTTGTTGATTCCACCTGTTAATTGCAGT

mRNA sequence

ATTGAAGCAAAAGTGGTGGCGTTAGAGTTACGCGAATTACTTTTCAAAACACCAAAAATAATAATAATATATTTTAACAAATAAAAATAAAAAAACCCCAGATCGGACGATTCTAACCCTCGATATTCGTCGACACTATAAATTCCGAATTAACCCTCCTCCCTTCTGGAACCCTCGGCTAACGCTGTCGTCTCCATTTGTTTCTCTCGAAAACCCGGCGTCGTTCCCAAGCAGGGCGGAAGAAAGTGGGTCTCTGTTAGCTCTTTCCCAGCGGCGGATTTGAACGTTATCGGAATGGATCCCGACGCCGTGGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAGGACAATTCCATGTTGACATTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTTCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTCGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTTGTCTTCGTCAGCGGCAATCTTCAGCTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGCTTTGTGTAGTTTGCGTCGTCTTTGTTCTTGTAGATCTAGGGGTTTTCATGATTTATGTTTTTCTTTGGGGTTCTTGTTTCTGAAGAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTAATTTACCAGCATCGGCCTAGTTGTACAATTGTGACTTCTAAAATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCTTGAAGTTGAGAGTAATCCATGGTATTGGGAAGCCTGGAATGTCAGGTCACTCAACCAGTTTGTTTATCAACGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATCGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATAGTCCCTATTCTATCTATTCAAATGCAAGTGTACTATATGGTATTATACATGTCGAAAATCACAACTTTAAACTTCTACGTCATGGAAATTGAAATATGAATGTCCGAAATGAAAGCAGTACCGGCACTCTACGCCCAAAAAATACAGGGTTTCAATGTGATCTTTTCCTTTAAACAACTAATATATAGATACAAAGTTGTTGAAATGTTTGGTTGTGCCTAGAAAATTAAATCAAAGAGCTGCACATCCAATGGAACAACTTGATGAAGCTACTGTTTTTGTGGATGATTGATTGGTGGCAATAAATCAGGTATTAATTTCCAAGTCAAACTCTGGTAGGGTCACATGAGGTAGGGCAGGCATATTAAGATGAGGCAATTCAGTAGCTTCAATCTGTTGTTGTATTGCTGAAGTTGTCTTCCTTTTCAGAATTGTACCCAGGGATTTGAATGGATTGCTCAAGCCATCTCTGAGTTTCAAAATGAAAGACACCTCAGAGATTTGCCAAGCAACAGTGAGGATAATCATTGCTGAAACAAGGCAGTGAGTTATAAAATTCTGCCTCTTCACTTCTTTTAGCTCTTTCACGATCTCCTTCTCTGTTTTCACTATGCTTCCATTTCTTTCCACATTTTCACTTTGAGGCTCTAAGTCTGTCTCAATTATTTTCTCATCCTCTTGCTGAGATGAGATTTGGGAGTGGTTGAGCCTCTGTTCTTCTCTTGTTGATTCCACCTGTTAATTGCAGT

Coding sequence (CDS)

ATGGATCCCGACGCCGTGGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAGGACAATTCCATGTTGACATTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTTCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTCGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTTGTCTTCGTCAGCGGCAATCTTCAGCTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGCTTTGTGTAGTTTGCGTCGTCTTTGTTCTTGTAGATCTAGGGGTTTTCATGATTTATGTTTTTCTTTGGGGTTCTTGTTTCTGAAGAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTAATTTACCAGCATCGGCCTAGTTGTACAATTGTGACTTCTAAAATGTTCCATTTGATGCCAACCCCACAGGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCTTGA

Protein sequence

MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCFSLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA

Homology

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BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 104/179 (58.10%), Postives = 112/179 (62.57%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ                     
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ--------------------- 123

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSF+V NDIFRLNYA
Sbjct: 124 -----------------------------------MFHLMPTPQGSFYVFNDIFRLNYA 126

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BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-46
Identity = 102/179 (56.98%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHL+ + QG+++V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLI-SNQGNYYVFNDIFRLNYA 122

[Close]

BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-34
Identity = 82/178 (46.07%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
            H ++TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQ                     
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNY 179
                                              MF L+P   G+F+VQND+FRLNY
Sbjct: 121 -----------------------------------MFQLLPA-GGNFYVQNDMFRLNY 121

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BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot
Match: Q75AA5 (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MD  A+A+ F + YY+ FD +R+ LGNLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           +H ++T+D QP+ P G +LV ++G+L +  EQ+A +FSQ                     
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQ--------------------- 122

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              +FHLMP    S++V NDIFRLNY+
Sbjct: 123 -----------------------------------VFHLMP-EGNSYYVFNDIFRLNYS 124

[Close]

BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot
Match: Q96VN3 (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-23
Identity = 66/177 (37.29%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 2   DPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCK 61
           D  ++A+ FV  YY TFD NRAGL  LY+D+SMLTFE   IQG   I+ KL+SLPFQ+ +
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 62  HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCFS 121
           H VST+D QPSG  GG+LV V+G L +  E++ + ++Q                      
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQT--------------------- 122

Query: 122 LGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNY 179
                                              F LMP   GS+FV ND+FRL Y
Sbjct: 123 -----------------------------------FQLMPDGAGSYFVLNDVFRLIY 123

[Close]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL
Match: A0A0A0KW20 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.2e-56
Identity = 122/179 (68.16%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 170

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 171 -----------------------------------MFHLMPTPQGSFFVQNDIFRLNYA 173

[Close]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL
Match: A0A6J1IQ79 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.9e-54
Identity = 118/179 (65.92%), Postives = 121/179 (67.60%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSF+V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLMPTPQGSFYVLNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL
Match: A0A118JX71 (Nuclear transport factor 2 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_002225 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 116/179 (64.80%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL NLYQ++SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 53  MDPDAVAKAFVEHYYSTFDANRTGLSNLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQC 112

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KHS++TVDCQPSGP GGMLVFVSGNLQL GEQHALKFSQ L        CR         
Sbjct: 113 KHSITTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQLL-----QLHCR--------- 172

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
               +FL                      T++  +MFHLMPTPQ SF+V NDIFRLNYA
Sbjct: 173 ----MFLN---------------------TLICLQMFHLMPTPQSSFYVLNDIFRLNYA 192

[Close]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL
Match: A0A6J1GVJ2 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.1e-53
Identity = 116/179 (64.80%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHL+PTPQGSF+V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLIPTPQGSFYVLNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL
Match: A0A1S3BXM4 (nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.2e-53
Identity = 114/179 (63.69%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRAGLGNLYQ+NSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQ                     
Sbjct: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 121 -----------------------------------MFHLMPTPQGSFFVQNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. NCBI nr
Match: XP_004152114.2 (nuclear transport factor 2B [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 122/179 (68.16%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 121 -----------------------------------MFHLMPTPQGSFFVQNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. NCBI nr
Match: KGN53044.1 (hypothetical protein Csa_014783 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 122/179 (68.16%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 170

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSFFVQNDIFRLNYA
Sbjct: 171 -----------------------------------MFHLMPTPQGSFFVQNDIFRLNYA 173

[Close]

BLAST of Lsi07G000200 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 118/179 (65.92%), Postives = 121/179 (67.60%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSF+V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLMPTPQGSFYVLNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. NCBI nr
Match: XP_023526029.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 5.0e-53
Identity = 117/179 (65.36%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSF+V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLMPTPQGSFYVLNDIFRLNYA 123

[Close]

BLAST of Lsi07G000200 vs. NCBI nr
Match: KVH95727.1 (Nuclear transport factor 2 [Cynara cardunculus var. scolymus])

HSP 1 Score: 218.4 bits (555), Expect = 5.0e-53
Identity = 116/179 (64.80%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL NLYQ++SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 53  MDPDAVAKAFVEHYYSTFDANRTGLSNLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQC 112

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KHS++TVDCQPSGP GGMLVFVSGNLQL GEQHALKFSQ L        CR         
Sbjct: 113 KHSITTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQLL-----QLHCR--------- 172

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
               +FL                      T++  +MFHLMPTPQ SF+V NDIFRLNYA
Sbjct: 173 ----MFLN---------------------TLICLQMFHLMPTPQSSFYVLNDIFRLNYA 192

[Close]

BLAST of Lsi07G000200 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 194.1 bits (492), Expect = 9.5e-50
Identity = 104/179 (58.10%), Postives = 112/179 (62.57%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ                     
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ--------------------- 123

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHLMPTPQGSF+V NDIFRLNYA
Sbjct: 124 -----------------------------------MFHLMPTPQGSFYVFNDIFRLNYA 126

[Close]

BLAST of Lsi07G000200 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 102/179 (56.98%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ                     
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQ--------------------- 120

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNYA 180
                                              MFHL+ + QG+++V NDIFRLNYA
Sbjct: 121 -----------------------------------MFHLI-SNQGNYYVFNDIFRLNYA 122

[Close]

BLAST of Lsi07G000200 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 99/174 (56.90%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 120
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ                     
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ--------------------- 121

Query: 121 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIF 175
                                              MFHLMPTPQGSF+V NDIF
Sbjct: 124 -----------------------------------MFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of Lsi07G000200 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-29
Identity = 75/178 (42.13%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 4   DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHS 63
           + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGFHDLCF 123
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ                     
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQT-------------------- 129

Query: 124 SLGFLFLKRNIMEQVLLVIFLIYQHRPSCTIVTSKMFHLMPTPQGSFFVQNDIFRLNY 179
                                               FHL+P  QGSFFVQN++FRLNY
Sbjct: 130 ------------------------------------FHLIPVLQGSFFVQNEMFRLNY 131

[Close]

BLAST of Lsi07G000200 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-26
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 4   DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHS 63
           + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQALCSLRRLCSCRSRGF 116
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ    L  +C+ R  GF
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVY--LLSICN-RFEGF 121

The following BLAST results are available for this feature:

BLAST of Lsi07G000200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7F5	1.3e-48	58.10	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9FZK4	3.6e-46	56.98	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q9XJ54	4.2e-34	46.07	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q75AA5	1.1e-23	36.31	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
Q96VN3	4.3e-23	37.29	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of Lsi07G000200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW20	5.2e-56	68.16	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 S...	[more]
A0A6J1IQ79	4.9e-54	65.92	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=...	[more]
A0A118JX71	2.4e-53	64.80	Nuclear transport factor 2 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_...	[more]
A0A6J1GVJ2	7.1e-53	64.80	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 S...	[more]
A0A1S3BXM4	9.2e-53	63.69	nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=...	[more]

BLAST of Lsi07G000200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152114.2	1.1e-55	68.16	nuclear transport factor 2B [Cucumis sativus]	[more]
KGN53044.1	1.1e-55	68.16	hypothetical protein Csa_014783 [Cucumis sativus]	[more]
XP_022979987.1	1.0e-53	65.92	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_023526029.1	5.0e-53	65.36	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]
KVH95727.1	5.0e-53	64.80	Nuclear transport factor 2 [Cynara cardunculus var. scolymus]	[more]

BLAST of Lsi07G000200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27970.1	9.5e-50	58.10	nuclear transport factor 2B	[more]
AT1G27310.1	2.6e-47	56.98	nuclear transport factor 2A	[more]
AT1G27970.2	1.3e-46	56.90	nuclear transport factor 2B	[more]
AT1G11570.2	3.2e-29	42.13	NTF2-like	[more]
AT1G11570.1	5.6e-26	54.78	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 6..101 e-value: 3.0E-27 score: 95.6
None	No IPR available	GENE3D	3.10.450.50		coord: 1..105 e-value: 2.9E-34 score: 119.9
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 151..179 coord: 1..101
None	No IPR available	PANTHER	PTHR12612:SF36	NUCLEAR TRANSPORT FACTOR 2B	coord: 151..179 coord: 1..101
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 6..176 score: 27.499228
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 2..178 e-value: 2.22158E-38 score: 125.858
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G000200.1	Lsi07G000200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane