Lsi06G016650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G016650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Exosome complex component RRP4-like protein
Location	chr06: 26908474 .. 26914138 (+)
RNA-Seq Expression	Lsi06G016650
Synteny	Lsi06G016650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCTTGGTTTAATTCTTTGGTTGAGTAGTTGGAGGTATGTAGATTCTTGCATTGTTGTTTTTTAGCTTAAATTTTGATTTTGCGAATATTTGTGTCATTAAAGTGTGATTTGAATGCTATTATTGTGATTGAATTGTTGCTTTGGGACTTATTGTTTGATTAAAGTGTGAAAATGTGTTAAAATGCCTCCACCCACCCTGTTTTTTTTCTTATCATTTGATGCGATCTTATCCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTAGAGAATTCCCTTTTGTTATGGAAATCATGGTGCGTACTGCTGCACCAGAGGGATAATTAGTTATGCCTTCTCTTCTTCTTCTTCAGAACTGCAAAATTGCTGCAACTGATCTTCCTCCTCTTCTGCTTCTTCCTTTTTTTGTCCTAAAGAGTGGTTGCATTTGTTGTAACTCTGGATTAATTGTATTTTTTTTATTTCTAGAGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTTTTAAGAAAATGATGTTATTTGTGTAAGTTTTATTGCTTTTACTGTTTCTTATCCAAAAAAGTTCTATAGTTTTTACTTTCACCTATCACCGTCAGAAGAAAGAATATATGATTTCTCACGTATCATACGTATAATATAAGATTTTCTCCTATATTTTTACATTTTTGAAAAATTAAACTTTATGATGTTTCTTCCCGGGGGGAGGGGCGGACAATCCTTAGTTAGGCTGAAGATTTGCTAGACAAAATATTTCTTATTAATCTCTGTACAACGAGTACAGCCTAAGTTGAAAATGAATAAGGTAATATGCCAACGGTATCAATGAGAGATAGTTTCTTATCCAAAAAAATAATGAGAGAGAGTAAGGAAACAAATACAAAGAAAGGAAATTACAGGGAAGGCAATATCTAAAGAATAAAAGGAAGAAAGTTTCCTATTCTCAACATAGCCAAATGTATTAGGGTTAAGCAATTGTCCTGAGAATAGTTGAGATATATTCAAGCTGGCCTAAACACTAATAGATATAAAAAAAAGTTCACTCTTACATAGGATACCATGGAATTAGAATGGACCATTAGGCCAAAGCAGGATGGTTATGGACTTGTAAAAAGTATAGTGCATAGGCTCCGACACATTAGATAGGTTGATGCATTTTTGGCATCTTGCCCAGTTCTGGCCAGGTGTCTTAGCTCAAATGCCTTTTTCTTTTGTGCCTAGTTGCTCTTCACCGAGGTCCCAAAATTTTCTTGACATTCTAATGTTGCTGTAGGCGTCTTTAACTCAAGTGTCTATTTGTGCCTCTTGCCCTTTTACTTTATGTAAGTGATGCAATATATATCCCTTATTGCTTCTTTTCTCACCTCTCTGAAACTCAAGTCAAGCCTTGTGCCTTGCGCAAAGGCTTGAAGAGATGTACTTTGGCACCTCTGTTTACCATGCACTTTAATTGATAAACACCACTCTCATTAGTAATTGTTCATGCATAATTTTCCATTTAAGAAAAAATAACATCACCCCATCTTTTCTCAGGCAGAAGTACGTGGTTTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAAGTAAAAAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAGAAACAAAATAAGTTCTAAAATCAAATTTTTGAGTGACTCTCACATCTTCACTGGTTTCTTAGGAGAGAGTCCATGGAAAGATTCTTGATAGCATGTGAATACTGATTCATAGACGAATCTTGCGCAAATTTTAGTGGTTAAAACGAACTGAGGAGGTGATTATAAAGGTTTTACACAGGAATAACTGAATAAGGGAGAAAGCCAGGAAGGAATGTCATTAAGGTGAAAAGACTGATGGGTGGAAATATTTAGTGATTATAAAAAGGAGCTAGCAGACAGGTGGGAAGCAAAAATGTAAAAGATAGCAATAGAAAACTGATCCTTTGCTAAGGCGAGAATGGCTATAACACAATCTTGAAGGAGGCTACCTATATTTGATATGATATCTTCGATGCAATAGTTATTGGTTATTATGTTCCTAACAACTTTTCTGGTATCAGCTCATCTTGCTTCTTTATGACTTGTGAATAAGATTTGTGCATTTGTATCCTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTATTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTCAAAATTGTGTGTAATTTGAATCACTCCTAATGTAAATTTTGTTACAAATCGTTTGATTTGCAGAGGGATTTTAGATTACCACCACTTGGCCTGTTAGTGTTAAAAGTATAGAATGCAATATTTGCTTAATTATTTGGTAGTACGTGGTTTCATAAATGTCTAGCATGCAAATTAATATGGCATTGCAGAGAAGAAATGAGATTTCAAATTCAATCAACATTAAACCCCATTGTTATCATCGTGACACATAACCCACCTAACAACAATCAAAAGAAAGCTTGCCTAAAAAAAACATAATCAAATGAAAGAATAAACCCTAAACCCTTAGACAAAATCAGTTGAGCAGTGATTTCTCCCGCACTTCAAATCTTTCAATTTCCTAACACTTTTTTCTTGGTTAGAAACGAAAGAAAAATACTCATTTGACTTCATTAAACTTTGTATTGAAGATTGATATTGTAATAGTCCGAGTTTAGGAAGGGGACATGAATGAACTAAGATCACATCTGAATGAGAGAGATCTCGGAGACATGATTGTATAGTTAAGAAAGGCTTAAAAGATCGCATCCGAATGAGAGAGATTCCTTTTCGGTGGCTGTTAAGCGTGCTTAGCTTAGAGCAATCCTATGTTGGGTGATTAGTGGCTCAATCATAAGAACTCCACAGTGCCTAGCTTGGAGCAATTCTATGTTAGGTGATCTCCTGGAAATTTTCTTAATGATGCATGTGAGTGAGTACAAAGCAAGCTGAAAAGATTCGTGTTGGTTTGTGGCGACAACTTTCACTCTTAGAAGCATTCAAGATAAGTAAGGATGACGTAGCCGAGGCCATTAAGTACCGAATTTGGATTCCGAATCCTGAACCTGGGGTATTATAGATATAGAGTACTCTTTCCCATGACGTCCATTGTTGTTTCATGTGAAGTAGGTCATCCTAACAACATAGAATTACAATGGTAAAGATTGTCATCCAAGAACTCACAAAATGAGAAAAAATCTAGCTATAATAATAAACACAACCTAATAAACCTATTTTAATTAATTAAAAATGATATAATCTTTAGTTTTCAAACCCATTAAAAATAATATCTCCAACCGAATATTCAAGTAACTATTTTATTTTGAAATTCAGCAAAAAAAAAAAAGAAAGCGTTTGCAGAATGGGGCATATTGTAGAGATATTAGCACAATATTGAGAGAGAAAGGGCAGTTTTACGTAGCTTTGAAGATTAAAGTACTCTACTACTACTACTATACTATACATGTAGATGGTAATTTTAATAATTGGTAAAGGAAAAGGCGACATCTTCATCACGAAGAAAAGTAGGATTGGAAATTGACTTTTATAGGAACCTTTGAATGAAGTATTTTATTATTATTTTTTTTTTTTTCTGCTTTTTTTCTGTCTGAAAAAATAAACAATAGATGAGGGAAGAAAAGAAAGGAGAACTTTGAAGGTGTATCTTTCTTTCTGAGCCAATCGACTTTTGAAAAATGCATATAATTTCATAAACAAAGTTTGTGAAAGAAGGGGATGCTGCTATTTGGGTTTCCTGCTCTTTCACCAAAGTCGCACTTAAGAAGAGCTTTATGTGTCATCTTTCCACTCAACAAAAATTTGCTTCTCCCCTTCCTTAATTACAACGCACTCACATGCAAATCATCTTCAATCCAAAACCCAAACCCAAAACTTAACACTAATTAATACAATAACAGAATTGATTAAAAGATGTATTATGGGTGGTAAGTAATTATTAAAGTTAAAAACAATAGCGTCCCGTCGACCACCATTTTGGTTATTAAAATGGGAAGGGAGAAAGAAAAGTGTGGTTATTAGAGCGGCTTTATCTCTTTATTCACAATCACAACAATCCCAGTGTTTGTACTTTCGGATGTGTTATATATATATATATATATATATATATATATGAAGAAGGAAGAAGGAAGAAGTAAGAAGTAAGAAGAAGAGAAGTAATTAGGGGAAAGAGAGGATTATATTAGGATAGGGAATGATGAGAAGATTGCCTCCTGGGTTTCGTTTTGAGCCAACGGAAGAAGAGCTTGTATTTGAGTATCTTAAATGCAAGGTATTCTCCTCTGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGTGTTTGGAATTTGGATCCTTGGGATATTCCTCCAGGTAATTTACGTTCATTAATTTTTTATTTTGATTCATTTTGGTTTTATACTTTTTAAAATGTTCATTTTAGTCATTGAACTTTTAACTTTCATTTATTTTGGTCTTGTAAAAAATGAAAATAGAAGAACCAACTTTCATTTATTTTGGTCTTGTAAAAAATGAAAATAGAAGAACCAAAATGGTCACTTTTTAAAATTATAAAGACTAAAATGAACAAAAATTAAAAATATAGGGACCAAAATAGTATCTATAGCTTTAATATGGTATGATATTTAATAATAAGTAAATTTAACGTTGTAGGTGGTGGAGGAAGGGAGGAAGAGAAATACTTATTCAGCAGGAAGGAGGCGGCGGAGGAATATAATAATAATAATAATAATAATAATATGGGAATAGTTGGATGGAGTAGGAGTGGGTATTGGAAAGCGAGAGGATGGGAGAAGGAAATAGTAAGTAATGAAATTGGAGTTGCATTGGTAGGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGGTGGGTGATGTATGAGTATCGCCTCCTCCTTCAACCACATTATTCCTATTCAAATATTAATTTGGAGAATAATAAATGGGTTCTTTGCCGAATTTTTTGCAACAAATTCAATGAAGATCATATTATTCACCGCCGTCTTCATTATTCTATTTCTTCTACAAACCATATGAATCAGGAACAGGATGATCACCTCATCATCACTCCTCTCTCCGACGACGATGGTTCTGTTTCCTCCACCGCCTCTTCCTCATCCACCTCCGCCGCAACGGCCACTACAACTACGACAATATTGCCCAGCTGCAACCATCCTTTTTCTCCTTCTATTTAG

mRNA sequence

ATGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGGTGGGTGATGTATGAGTATCGCCTCCTCCTTCAACCACATTATTCCTATTCAAATATTAATTTGGAGAATAATAAATGGGTTCTTTGCCGAATTTTTTGCAACAAATTCAATGAAGATCATATTATTCACCGCCGTCTTCATTATTCTATTTCTTCTACAAACCATATGAATCAGGAACAGGATGATCACCTCATCATCACTCCTCTCTCCGACGACGATGGTTCTGTTTCCTCCACCGCCTCTTCCTCATCCACCTCCGCCGCAACGGCCACTACAACTACGACAATATTGCCCAGCTGCAACCATCCTTTTTCTCCTTCTATTTAG

Coding sequence (CDS)

ATGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGGTGGGTGATGTATGAGTATCGCCTCCTCCTTCAACCACATTATTCCTATTCAAATATTAATTTGGAGAATAATAAATGGGTTCTTTGCCGAATTTTTTGCAACAAATTCAATGAAGATCATATTATTCACCGCCGTCTTCATTATTCTATTTCTTCTACAAACCATATGAATCAGGAACAGGATGATCACCTCATCATCACTCCTCTCTCCGACGACGATGGTTCTGTTTCCTCCACCGCCTCTTCCTCATCCACCTCCGCCGCAACGGCCACTACAACTACGACAATATTGCCCAGCTGCAACCATCCTTTTTCTCCTTCTATTTAG

Protein sequence

MVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKKTLDFCTIIGSSSGSRRKTKKTGWVMYEYRLLLQPHYSYSNINLENNKWVLCRIFCNKFNEDHIIHRRLHYSISSTNHMNQEQDDHLIITPLSDDDGSVSSTASSSSTSAATATTTTTILPSCNHPFSPSI

Homology

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BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-33
Identity = 81/184 (44.02%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VA KRWR++++++QD VLMLSSMN+PDGIQ                              
Sbjct: 104 VAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQH 163

Query: 62  ---------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHV 121
                          LE+GQLL + PYLVKR K HFH++E  GID+I+GCNGFIW+GEHV
Sbjct: 164 DGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHV 223

Query: 122 DPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMK 141
           +  + M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS LG  
Sbjct: 224 EVRDPMAIDDQKDE-EMISSSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFT 280

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BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.2e-10
Identity = 53/175 (30.29%), Postives = 74/175 (42.29%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           V PKRW++DI   Q+AVLMLSS+NLP GIQ                              
Sbjct: 122 VQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFS 181

Query: 62  ---------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHV 121
                          L  G  L + P LV R K H + L   G+DIIL  NG++W+ +H 
Sbjct: 182 DGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH- 241

Query: 122 DPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLS 132
              E+      + + E++ S  E  + N+  E       TR NI R +  I+ L+
Sbjct: 242 --NENQHSSVSITRLEEEAS--ESIYSNENDE---IDGYTRLNISRVSICIKGLA 287

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BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07
Identity = 40/125 (32.00%), Postives = 54/125 (43.20%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGI------------------------------- 61
           V  KRW+++ +   D+VL+LSSMNLP G                                
Sbjct: 91  VQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS 150

Query: 62  --------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHV 82
                         +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIW+    
Sbjct: 151 DGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWVYPTP 210

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BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07
Identity = 42/124 (33.87%), Postives = 54/124 (43.55%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGI------------------------------- 61
           V  KRW+++ +   D+VL+LSSMNLP G                                
Sbjct: 91  VQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS 150

Query: 62  --------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWI---G 78
                         +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIWI    
Sbjct: 151 DGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTP 210

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BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07
Identity = 39/116 (33.62%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGI------------------------------- 61
           V  KRW+++ +   D+VL+LSSMNLP G                                
Sbjct: 91  VQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS 150

Query: 62  --------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWI 73
                         +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIWI
Sbjct: 151 DGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL
Match: A0A5D3BF59 (Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00280 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.2e-69
Identity = 195/413 (47.22%), Postives = 211/413 (51.09%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ                              
Sbjct: 164 VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 223

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIG+HVD
Sbjct: 224 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVD 283

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSIL---- 181
            T+D MIEDQVNK EQKGSKFEG FGNQM ERV+TPLETRQNICRTANAIRVLSIL    
Sbjct: 284 STQDTMIEDQVNKIEQKGSKFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILEEEL 343

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 344 VFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNG 403

Query: 242 --------------------------------GMKKTLDFCTIIGSSSGSRRKTKKTGWV 255
                                           GMK TLDF T       + RK KKTGWV
Sbjct: 404 EGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT------NNIRKMKKTGWV 463

[Close]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 127/183 (69.40%), Postives = 134/183 (73.22%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRL+I+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+I GCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKK 141
           PTEDMMIEDQVNKSEQKGSKFEGTFGNQ+QERVYTPLETRQNICRTANAIRVLS LG   
Sbjct: 222 PTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIM 281

[Close]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61
Identity = 124/177 (70.06%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDI+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILG 135
           PTEDMM+ED +NKSEQKGSKFEG+FGNQ+QER+YTPLETRQNICRTANAIRVLSILG
Sbjct: 222 PTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILG 278

[Close]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61
Identity = 124/177 (70.06%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDI+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILG 135
           PTEDMM+ED +NKSEQKGSKFEG+FGNQ+QER+YTPLETRQNICRTANAIRVLSILG
Sbjct: 222 PTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILG 278

[Close]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL
Match: A0A5A7URG7 (Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00290 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 124/183 (67.76%), Postives = 131/183 (71.58%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ                              
Sbjct: 103 VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 162

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIG+HVD
Sbjct: 163 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVD 222

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKK 141
            T+D MIEDQVNK EQKGSKFEG FGNQM ERV+TPLETRQNICRTANAIRVLSILG   
Sbjct: 223 STQDTMIEDQVNKIEQKGSKFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILGFII 282

[Close]

BLAST of Lsi06G016650 vs. NCBI nr
Match: TYJ98430.1 (exosome complex component RRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-68
Identity = 195/413 (47.22%), Postives = 211/413 (51.09%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ                              
Sbjct: 164 VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 223

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIG+HVD
Sbjct: 224 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVD 283

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSIL---- 181
            T+D MIEDQVNK EQKGSKFEG FGNQM ERV+TPLETRQNICRTANAIRVLSIL    
Sbjct: 284 STQDTMIEDQVNKIEQKGSKFEGNFGNQMHERVHTPLETRQNICRTANAIRVLSILEEEL 343

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 344 VFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGGDEEKYLFSKKEAEEYNNNNNG 403

Query: 242 --------------------------------GMKKTLDFCTIIGSSSGSRRKTKKTGWV 255
                                           GMK TLDF T       + RK KKTGWV
Sbjct: 404 EGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDFYT------NNIRKMKKTGWV 463

[Close]

BLAST of Lsi06G016650 vs. NCBI nr
Match: KAG6571439.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-63
Identity = 127/161 (78.88%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ----------------------LERGQLLT 61
           VAPKRWRL+I+YSQDAVLMLSSMNLPDGIQ                      LERGQLLT
Sbjct: 102 VAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICLERGQLLT 161

Query: 62  ISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFE 121
           +SPYLVKRRKQHFHHLEQYGID+I GCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFE
Sbjct: 162 VSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFE 221

Query: 122 GTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKKTLD 141
           GTFGNQ+QERVYTPLETRQNICRTANAIRVLS LG   T++
Sbjct: 222 GTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVE 262

[Close]

BLAST of Lsi06G016650 vs. NCBI nr
Match: XP_023554062.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554063.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554064.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 7.5e-61
Identity = 127/183 (69.40%), Postives = 134/183 (73.22%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRL+I+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+I GCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKK 141
           PTEDMMIEDQVNKSEQKGSKFEGTFGNQ+QERVYTPLETRQNICRTANAIRVLS LG   
Sbjct: 222 PTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIM 281

[Close]

BLAST of Lsi06G016650 vs. NCBI nr
Match: XP_022963877.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963878.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963879.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >KAG7011206.1 Exosome complex component RRP4-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 7.5e-61
Identity = 127/183 (69.40%), Postives = 134/183 (73.22%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRL+I+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+I GCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMKK 141
           PTEDMMIEDQVNKSEQKGSKFEGTFGNQ+QERVYTPLETRQNICRTANAIRVLS LG   
Sbjct: 222 PTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIM 281

[Close]

BLAST of Lsi06G016650 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 9.8e-61
Identity = 124/177 (70.06%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VAPKRWRLDI+YSQDAVLMLSSMNLPDGIQ                              
Sbjct: 102 VAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQH 161

Query: 62  --------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVD 121
                         LERGQLLT+SPYLVKRRKQHFHHLEQYGID+ILGCNGFIWIGEHVD
Sbjct: 162 DGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVD 221

Query: 122 PTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILG 135
           PTEDMM+ED +NKSEQKGSKFEG+FGNQ+QER+YTPLETRQNICRTANAIRVLSILG
Sbjct: 222 PTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILG 278

[Close]

BLAST of Lsi06G016650 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34
Identity = 81/184 (44.02%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 2   VAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ------------------------------ 61
           VA KRWR++++++QD VLMLSSMN+PDGIQ                              
Sbjct: 104 VAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQH 163

Query: 62  ---------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHV 121
                          LE+GQLL + PYLVKR K HFH++E  GID+I+GCNGFIW+GEHV
Sbjct: 164 DGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHV 223

Query: 122 DPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGMK 141
           +  + M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS LG  
Sbjct: 224 EVRDPMAIDDQKDE-EMISSSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFT 280

[Close]

BLAST of Lsi06G016650 vs. TAIR 10
Match: AT1G56010.1 (NAC domain containing protein 1 )

HSP 1 Score: 43.5 bits (101), Expect = 3.1e-04
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 127 IRVLSILGMKKTLDFCTIIGSSSGSRRKTKKTGWVMYEYRLLLQPHYSYSNINLENNKWV 186
           +R   ++GM+KTL F        G   + +KT WVM+E+RL    H    +++     WV
Sbjct: 44  LRKGKLVGMRKTLVF------YQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWV 102

Query: 187 LCRIF 192
           LCR+F
Sbjct: 104 LCRVF 102

[Close]

BLAST of Lsi06G016650 vs. TAIR 10
Match: AT1G56010.2 (NAC domain containing protein 1 )

HSP 1 Score: 43.5 bits (101), Expect = 3.1e-04
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 127 IRVLSILGMKKTLDFCTIIGSSSGSRRKTKKTGWVMYEYRLLLQPHYSYSNINLENNKWV 186
           +R   ++GM+KTL F        G   + +KT WVM+E+RL    H    +++     WV
Sbjct: 111 LRKGKLVGMRKTLVF------YQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWV 169

Query: 187 LCRIF 192
           LCR+F
Sbjct: 171 LCRVF 169

[Close]

BLAST of Lsi06G016650 vs. TAIR 10
Match: AT3G12977.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 9.0e-04
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 132 ILGMKKTLDFCTIIGSSSGSRRKTKKTGWVMYEYRLLLQPHYSYSNINLENNKWVLCRIF 191
           ++GM+KTL F        G   K +KT WVM+E+R  LQ    + + N    +WVLCR+F
Sbjct: 114 LVGMRKTLVF------YRGRSPKGRKTDWVMHEFR--LQGKLLHHSPNSLEEEWVLCRVF 170

Query: 192 CNKFN 197
               N
Sbjct: 174 HKNSN 170

The following BLAST results are available for this feature:

BLAST of Lsi06G016650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	1.8e-33	44.02	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q09704	6.2e-10	30.29	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q2KID0	1.7e-07	32.00	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q8VBV3	1.7e-07	33.87	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q13868	2.2e-07	33.62	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of Lsi06G016650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF59	6.2e-69	47.22	Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1HGD9	3.6e-61	69.40	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1K7S0	4.7e-61	70.06	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1EXY1	4.7e-61	70.06	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A5A7URG7	3.4e-59	67.76	Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lsi06G016650 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98430.1	1.3e-68	47.22	exosome complex component RRP4-like protein [Cucumis melo var. makuwa]	[more]
KAG6571439.1	2.1e-63	78.88	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023554062.1	7.5e-61	69.40	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02355406...	[more]
XP_022963877.1	7.5e-61	69.40	exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_02296...	[more]
XP_022995373.1	9.8e-61	70.06	exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom...	[more]

BLAST of Lsi06G016650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	1.3e-34	44.02	ribosomal RNA processing 4	[more]
AT1G56010.1	3.1e-04	35.38	NAC domain containing protein 1	[more]
AT1G56010.2	3.1e-04	35.38	NAC domain containing protein 1	[more]
AT3G12977.1	9.0e-04	38.46	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 120..167 e-value: 1.5E-5 score: 25.9
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 26..193 score: 9.567895
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 35..75 e-value: 4.5E-13 score: 49.4
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 87..197 e-value: 3.6E-11 score: 45.1
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 132..192
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 32..154
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 2..33
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 2..33
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 32..154
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 35..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016650.1	Lsi06G016650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding