Lsi06G010950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	chr06: 21229278 .. 21229655 (-)
RNA-Seq Expression	Lsi06G010950
Synteny	Lsi06G010950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

mRNA sequence

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Coding sequence (CDS)

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Protein sequence

MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGGHGK

Homology

[Close]

BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match: A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.2e-32
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M  +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
           GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 126
           GGHGK
Sbjct: 121 GGHGK 125

[Close]

BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match: A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.1e-31
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
           GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG  GGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 126
           GGHGK
Sbjct: 121 GGHGK 125

[Close]

BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match: A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
           GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR  EGGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 126
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match: A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
           GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR  EGGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 126
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match: A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVL-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M   KSLVLAALLVSSLFV+ S SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           SGSGSG  S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 126
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M  +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
           GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 126
           GGHGK
Sbjct: 121 GGHGK 125

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: XP_038879831.1 (glycine-rich cell wall structural protein 2 [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAALLVSSLFV+SHSRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSG--SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSG 120
           GSGSGSG  SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG  GGGSGYGGGYG G
Sbjct: 61  GSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYGGG 120

Query: 121 YGGGHGK 126
           YGGGH K
Sbjct: 121 YGGGHRK 127

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 8.4e-31
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
           GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG  GGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 126
           GGHGK
Sbjct: 121 GGHGK 125

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: XP_016899784.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0035121.1 glycine-rich cell wall structural protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M   KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
           GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR  EGGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 126
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-29
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M  +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLG  GSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG--GSGSGSGS 60

Query: 61  GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
           GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 126
           GGHGK
Sbjct: 121 GGHGK 123

[Close]

BLAST of Lsi06G010950 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 6   SLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG 65
           SL+L  L++++  ++S SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GSGSG G
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  ---SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGG 125
              S SSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G G G G+GGG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

[Close]

BLAST of Lsi06G010950 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 8   VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGS 67
           +L  +++SSL +L+ SR+ARKDLGIDLGG+G+G+G G+GIGLG   GSG+G+GSGSGSGS
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 68  GSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 103
            S SSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of Lsi06G010950 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2L6	8.2e-32	90.40	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JMR8	4.1e-31	90.40	glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7T0K2	1.5e-30	88.19	Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DUX4	1.5e-30	88.19	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LWP0	3.8e-29	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1	[more]

BLAST of Lsi06G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921886.1	1.7e-31	90.40	glycine-rich cell wall structural protein 2-like [Cucurbita moschata]	[more]
XP_038879831.1	1.7e-31	91.34	glycine-rich cell wall structural protein 2 [Benincasa hispida]	[more]
XP_022988598.1	8.4e-31	90.40	glycine-rich cell wall structural protein 2-like [Cucurbita maxima]	[more]
XP_016899784.1	3.2e-30	88.19	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0...	[more]
XP_023515822.1	2.7e-29	88.80	counting factor 45-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G010950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	3.0e-18	68.85	glycine-rich protein	[more]
AT4G30450.1	1.3e-16	71.43	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..94
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..125
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010950.1	Lsi06G010950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane