Lsi05G017500 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKFDPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQLGRWLQK Homology
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 2.4e-55 Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 0
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53 Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53 Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 9.7e-49 Identity = 105/126 (83.33%), Postives = 109/126 (86.51%), Query Frame = 0
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47 Identity = 104/126 (82.54%), Postives = 108/126 (85.71%), Query Frame = 0
BLAST of Lsi05G017500 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus]) HSP 1 Score: 224.6 bits (571), Expect = 4.9e-55 Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 0
BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_008438490.1 (PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 uncharacterized protein E6C27_scaffold171G004700 [Cucumis melo var. makuwa] >TYK17328.1 uncharacterized protein E5676_scaffold434G001830 [Cucumis melo var. makuwa]) HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53 Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0
BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 204.5 bits (519), Expect = 5.3e-49 Identity = 106/126 (84.13%), Postives = 110/126 (87.30%), Query Frame = 0
BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48 Identity = 105/126 (83.33%), Postives = 109/126 (86.51%), Query Frame = 0
BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_022979583.1 (uncharacterized protein LOC111479265 [Cucurbita maxima]) HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47 Identity = 104/126 (82.54%), Postives = 108/126 (85.71%), Query Frame = 0
BLAST of Lsi05G017500 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15 Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0
BLAST of Lsi05G017500 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 ) HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 0
BLAST of Lsi05G017500 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.7e-11 Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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