Lsi05G017500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G017500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEmbryo sac development arrest protein
Locationchr05: 24899649 .. 24900029 (-)
RNA-Seq ExpressionLsi05G017500
SyntenyLsi05G017500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA

mRNA sequence

ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA

Coding sequence (CDS)

ATGAGTTTCCATTTCCACAACCGTGGGCTCTTATCGGCTGGGCCGTCCAGAAAGCGTAAGGAGCCATCCGCGCCGGCGGCTCCTAAAGCCGGTGAGCCATCGGTTTTATCGAACCGGCTTCTAGCCGGGTACATGGCTTATGAGTTTCTAACAAAAGGGACTCTGTTGGGCCGGAAGTTCGACCCGGCTCGAGACGAAGCAAGCCCATCCGCCGCCACCCAGTGGAAGAAGCCGAAGTCGGAAGCCGCACCGCCGGAGATCTTGAAGAAAGAGCATCAGATTCAGAGTTACGCTGAGGTGGCAACCATCCTGAAGACTACTGGAGCCCACATATCCGGAATCGTCAACCCGACCCAACTGGGTCGGTGGCTTCAAAAGTGA

Protein sequence

MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKFDPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQLGRWLQK
Homology
BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.4e-55
Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH+RGLLSAGPS+KRKEPS P+A KAGEPSV SNRLLAGYMAYEFLTKGTL GRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPARDEASPSAAT----QWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVN 120
           DP RDEA+PSAA+    QWKKPKS+AAPPEILKKEHQIQSYAEVA ILKTTG+HISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLGRWLQK 127
           PTQLGRWLQK
Sbjct: 121 PTQLGRWLQK 130

BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAP-KAGEPSVLSNRLLAGYMAYEFLTKGTLLGRK 60
           MSFHFH+RGLLSAGPS+KRKEPS PA P KAGEPSVLSNRLLAGYMAYEFLTKGTL GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPARDEASPSAA--TQWKKPKSEAAPPEILKKEH--QIQSYAEVATILKTTGAHISGIV 120
           FDP RDEA+PS+A  +QWKKPK EAAPPEILKKEH  QIQSYAEVA ILKTTG+HISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLGRWLQK 127
           NPTQLGRWLQK
Sbjct: 121 NPTQLGRWLQK 131

BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAP-KAGEPSVLSNRLLAGYMAYEFLTKGTLLGRK 60
           MSFHFH+RGLLSAGPS+KRKEPS PA P KAGEPSVLSNRLLAGYMAYEFLTKGTL GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPARDEASPSAA--TQWKKPKSEAAPPEILKKEH--QIQSYAEVATILKTTGAHISGIV 120
           FDP RDEA+PS+A  +QWKKPK EAAPPEILKKEH  QIQSYAEVA ILKTTG+HISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLGRWLQK 127
           NPTQLGRWLQK
Sbjct: 121 NPTQLGRWLQK 131

BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.7e-49
Identity = 105/126 (83.33%), Postives = 109/126 (86.51%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH+RGLL AGPSRKRKE   PAA KA EP V SNRLLAGYMAYEFLTKGT+LGR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQL 120
           +P R EA PSAA QWKK KSEAAPPEILKKEHQIQSY EVATILKTTG HI  IVNPTQL
Sbjct: 61  NPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQL 120

Query: 121 GRWLQK 127
           GRWLQK
Sbjct: 121 GRWLQK 123

BLAST of Lsi05G017500 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 104/126 (82.54%), Postives = 108/126 (85.71%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH RGLL  GPSRKRKE   PAA KA EP V SNRLLAGYMAYEFLTKGT+LGR+F
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQL 120
           +P + EA PSAA QWKK KSEAAPPEILKKEHQIQSY EVATILKTTGAHI  IVNPTQL
Sbjct: 61  NPGQAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQL 120

Query: 121 GRWLQK 127
           GRWLQK
Sbjct: 121 GRWLQK 123

BLAST of Lsi05G017500 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.9e-55
Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH+RGLLSAGPS+KRKEPS P+A KAGEPSV SNRLLAGYMAYEFLTKGTL GRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPARDEASPSAAT----QWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVN 120
           DP RDEA+PSAA+    QWKKPKS+AAPPEILKKEHQIQSYAEVA ILKTTG+HISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLGRWLQK 127
           PTQLGRWLQK
Sbjct: 121 PTQLGRWLQK 130

BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_008438490.1 (PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 uncharacterized protein E6C27_scaffold171G004700 [Cucumis melo var. makuwa] >TYK17328.1 uncharacterized protein E5676_scaffold434G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAP-KAGEPSVLSNRLLAGYMAYEFLTKGTLLGRK 60
           MSFHFH+RGLLSAGPS+KRKEPS PA P KAGEPSVLSNRLLAGYMAYEFLTKGTL GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPARDEASPSAA--TQWKKPKSEAAPPEILKKEH--QIQSYAEVATILKTTGAHISGIV 120
           FDP RDEA+PS+A  +QWKKPK EAAPPEILKKEH  QIQSYAEVA ILKTTG+HISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLGRWLQK 127
           NPTQLGRWLQK
Sbjct: 121 NPTQLGRWLQK 131

BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 5.3e-49
Identity = 106/126 (84.13%), Postives = 110/126 (87.30%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH+RGLL AGPSRKRKE   PAA KA EPSV SNRLLAGYMAYEFLTKGT+LGR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKE---PAALKASEPSVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQL 120
           +P R EA PSAA QWKK KSEAAPPEILKKEHQIQSY EVATILKTTG HI  IVNPTQL
Sbjct: 61  NPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQL 120

Query: 121 GRWLQK 127
           GRWLQK
Sbjct: 121 GRWLQK 123

BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 105/126 (83.33%), Postives = 109/126 (86.51%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH+RGLL AGPSRKRKE   PAA KA EP V SNRLLAGYMAYEFLTKGT+LGR+F
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQL 120
           +P R EA PSAA QWKK KSEAAPPEILKKEHQIQSY EVATILKTTG HI  IVNPTQL
Sbjct: 61  NPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQL 120

Query: 121 GRWLQK 127
           GRWLQK
Sbjct: 121 GRWLQK 123

BLAST of Lsi05G017500 vs. NCBI nr
Match: XP_022979583.1 (uncharacterized protein LOC111479265 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 104/126 (82.54%), Postives = 108/126 (85.71%), Query Frame = 0

Query: 1   MSFHFHNRGLLSAGPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKF 60
           MSFHFH RGLL  GPSRKRKE   PAA KA EP V SNRLLAGYMAYEFLTKGT+LGR+F
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKE---PAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREF 60

Query: 61  DPARDEASPSAATQWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQL 120
           +P + EA PSAA QWKK KSEAAPPEILKKEHQIQSY EVATILKTTGAHI  IVNPTQL
Sbjct: 61  NPGQAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQL 120

Query: 121 GRWLQK 127
           GRWLQK
Sbjct: 121 GRWLQK 123

BLAST of Lsi05G017500 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 22  PSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKFDPARDEASPSAATQWKKPKSE 81
           P+  A     EP V SN+LLAGY+A+EFL  GTL G  ++P + +A P   TQ   P+  
Sbjct: 48  PTTTATVALAEP-VCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGP-LTTQSIDPRKN 107

Query: 82  AAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQLGRWLQ 126
               +I   +H+ + Y EVA IL+  G H+ GIVNP+QL R+L+
Sbjct: 108 KPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFLK 149

BLAST of Lsi05G017500 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 0

Query: 14  GPSRKRKEPSAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKFDPARDEASPSAAT 73
           G SRKRK+  +     A       N LLAGYMA+E+LT GT+LGRK      E  P  + 
Sbjct: 10  GASRKRKDTESDLREAA-----TPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVS- 69

Query: 74  QWKKPKSEAAPPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQLGRWLQ 126
                    +P +  + +   QSY+EVA++ KT G H+ G+VNPTQL +W+Q
Sbjct: 70  --------PSPLQSREVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWIQ 107

BLAST of Lsi05G017500 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-11
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 23  SAPAAPKAGEPSVLSNRLLAGYMAYEFLTKGTLLGRKFDPARDEASPSAATQWKKPKSEA 82
           S  ++  A EP   +  +LAGY+++E+LT+GTL G +++ AR +A  S      KP    
Sbjct: 55  SKKSSTAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAESSKI----KPSHTV 114

Query: 83  APPEILKKEHQIQSYAEVATILKTTGAHISGIVNPTQLGRWLQ 126
            P E  + E + + Y EVA +L++ GA + GIVNP QL R+L+
Sbjct: 115 EPAE--ECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4C12.4e-5586.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1[more]
A0A5A7U1L21.7e-5387.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWH51.7e-5387.02uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=... [more]
A0A6J1E9609.7e-4983.33uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC1114318... [more]
A0A6J1IWN81.1e-4782.54uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265... [more]
Match NameE-valueIdentityDescription
KGN56835.14.9e-5586.92hypothetical protein Csa_009887 [Cucumis sativus][more]
XP_008438490.13.5e-5387.02PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 unc... [more]
XP_023526927.15.3e-4984.13uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo][more]
XP_022924296.12.0e-4883.33uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothet... [more]
XP_022979583.12.2e-4782.54uncharacterized protein LOC111479265 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G44060.11.4e-1543.27unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G23440.12.0e-1441.07embryo sac development arrest 6 [more]
AT1G04000.12.7e-1138.83unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..87
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 24..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G017500.1Lsi05G017500.1mRNA