Lsi05G016240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G016240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein RDM1-like
Location	chr05: 23894635 .. 23898237 (+)
RNA-Seq Expression	Lsi05G016240
Synteny	Lsi05G016240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGACCTGGGTCGATCCGGTAATGGTGCAGAAAGGTTTGGCTGAGTAACAGGTACGAATCGAGCTCCGCAAAGCAAAAATGATGCGTATTTGTGATTGTAATGCCATTTTGAACAACTCTGGCTTAATCAAGAGCAGATAATATGTGTATATATATTATATGTTCAGTGGAGGCGAGAGGCTTTAGCCATGGAAATTTGGAGGGTTGTTTGATGAGTGGAGATGCCGCCCATCCCAACCAGACAGCAGCTTTGGCGGCGAAACGGAGACATTCCCACAATTATTATAACTCAACCGGACCGGTCGGTTTGACCCGAGATAAAGGTTTTCTTTTTTCCTTCTTTCTAAGGTTTAGCCTAGCCACGTCATCATTTGGAGTACACTAATATTAATATATATATATATATATATATATATTTATGAAAACCAATTTCTAATGTGAATAATATTTTCATGATACTAATATTTCCATCGATTAATTTAAATATATTTTTAATATTTTATAAAAAAATTTGACATGGATTTTTTTATCCATTAGTTCAATTTTCATAGAATTGAGATATTGACATTTTGATACCTAATATAAATATTTTATTTTATTAAAATTAAATATTTAACACATTAAAATTGGAATTTTTAATTTTATAGAAGAATTGTAATAATAAAAAAAAGAGTAGATAACCATGCTTTTTAATTGTAAGAAAAAATTATTTGGGCAAAATTTGTAAAAAGATCAATTTTTACTCCTAAATCAAATTAGATCATAAGCTTCCAAGTCATTAAATTGACCCTAAACTGAATTAATATTCTACATTTTACCCTTAGTTTGATTTTTGTAAATTCATTCGCTAATTTATACCAAAACAACTTAGAAATTTTTTCAAAAATTCATCCATTTTAATAAAATAAAATTTTGCAAAAATAAATAAATAAAGCTAACTGAGTTGCAAATTAATAATTGAATAACTTTCCCCTAATTCATATATTTCAACAAAAAAGAATAGTTTTATTGCCATTTTTCTTTAAAATTTTCTCAAATCATAATGTACATACTGTTTTATATTTTTATTAAATACATAAGAAAATCTCTTTCCGTTATATTTGAAACAAAAACTTTATAGATGGTAAGTACTACACTCTTATAAATTTGAGTTGAAATTGCAATATGCCTAACATAATTTGAAGTGTTATTTAATGAAATTAAAAGTTTATGGTGAAAAATTGTCAACTTGACAATACGCATAATTTGAGTTTAGGAGTTTTTCTTTTTAATATTTAAGTTGCGAGTCTCATTTATAGATGAGGAAGAAATGATAAAGATGTAAAGTAATTAATGAAAAGATAGTGGAGTCTTTGAATATGGAATGTGAATGAGATAGGCAATTATAAGAAAGGAACAAATTTACTTCTTTAATAAAGTAGATATTCTCAAATTTATGTAGATCTACCAATTGATTTCATGGCTGTATTTTAGAAAATAACATCAATGGAGAATTGGAGATGAAGGATTTTGTGAACCGGCGGTCCTGGCCTCTGGAAATAATCATTGAAATTTAACTGAACCGGCTTTTTGAACCAATCCTAAACATTTCTGATCTTCCATTGCGCAAAAGGAAAAAGCAAACGCCGCAAAACTCAAAACTGGTCTCTCAAAATTCGAGCTTCTTGAATTACTGAGCTCTACTGGTTATCCGTCCCCAAACCCACATCGAAGAACAGCTTCAGCTTTACGATTTGACGCTCTCTCTTTCTTTTCGAAATACTAAGGTACTTACCATCACTCTGTCTTCCCATCGATCCATTACCCTCTTTGTTCATATGTAGAATAATTACTTGGTTTACTGTTTCTTCTTGTCCGATAATCAAAACCCATCTTCTTCCTTTCTTCTCATCGTCTCTCGTTGGTGGGTTTGCAAGATTTTTATTACAGGATCCGATGGGTTGTTCGGTGCATTTGTATGGAAATTTCTTGTTTATTTGTTTGTTTGAGATCTCGATTGTAATTGTCTGTCATTCTGTTGATGGGGTTGCTAGAATGTTGGTTAGAGGTTAGAGGGATAAACAGCCATCGTTTGCTGCAAGTTCTTAGAAACTGCCCTAGATTGCGATTGTCATTGAGTGCATTGTTAATAATCTGAGCGTGTTCCCTAGCAGAAACTGAGTACATTGCTTCATAAGTTGCATGTGTGAGGTGGTCTTTGCAAATGGAGATATGTAATAGACATAGTAAGATTGTGATGGCCTGATAGGGTGAAATTGTTTCTCTGAAGGACCCAGAAACCAGACTTGGATTGGTTGATTAGTTCCAAGTCTGTGATTAAGTTAAGTTATAAACATGAGATTGAAAATTTGAAGTACATTTTGTTTTATGATAACTAAAAGCTCTTGTGCTCTTTTTTCCTTTTCAATGTAATCTTTTTGACAAACTTAAGCATAGATCAATGGCATAAAGCATTTACTACCGATCTAGAGGTTGGAAGTTCGAATCCCCCTCCTAAATTGTTGACTAAAAGAAAGTAGTAATGTTTTGTATCTGGTGGATCTGTTTATTTTGGTTGGCATCTCATTTTTCTGTATTGATCGGCATGGTTACAAACCCATGATCTCTTTTTTTTCTTTTTTTCTTTTTTCAGAATTACATAATTTACAAAATGAAGAGACCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGTAGGAGTACAAAATGATGGATTTGAGTTCAAGCCAACCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATTTTGGCCTTGCATGAGATCAATTCAAAGTCTCTAATAATCAATGCTGCTGTATATATAAATTTCAAATTCATAAGCTTTGGAAAAGAGGATCTTCTTTGAAATGACTGCTAACAATGCAGGTATGTTGATTAAGAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCATATGTTGACTCCATTTTCCCCCAGCTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAACATATTTCTAGAAGGCTAACAAGTCAGTGACAATGTGAATTGTAATAGAAACAGCATATAGTTCTTTTGTCACATTGCACTTCAATGTGTAGGTTTCTTATCAACTGACAGGGAAGAAGCTCCAGTATTGCTTCTTCTGTCCATTGTTGCCATCTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTACATCAATATTGAAGATGCATATTTTATCTTACAGTTCTTTCCTATCTGAGAATTAT

mRNA sequence

GGAGACCTGGGTCGATCCGGTAATGGTGCAGAAAGGTTTGGCTGAGTAACAGTGGAGGCGAGAGGCTTTAGCCATGGAAATTTGGAGGGTTGTTTGATGAGTGGAGATGCCGCCCATCCCAACCAGACAGCAGCTTTGGCGGCGAAACGGAGACATTCCCACAATTATTATAACTCAACCGGACCGGTCGGTTTGACCCGAGATAAAGAAAATAACATCAATGGAGAATTGGAGATGAAGGATTTTGTGAACCGGCGGTCCTGGCCTCTGGAAATAATCATTGAAATTTAACTGAACCGGCTTTTTGAACCAATCCTAAACATTTCTGATCTTCCATTGCGCAAAAGGAAAAAGCAAACGCCGCAAAACTCAAAACTGGTCTCTCAAAATTCGAGCTTCTTGAATTACTGAGCTCTACTGGTTATCCGTCCCCAAACCCACATCGAAGAACAGCTTCAGCTTTACGATTTGACGCTCTCTCTTTCTTTTCGAAATACTAAGAATTACATAATTTACAAAATGAAGAGACCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGTAGGAGTACAAAATGATGGATTTGAGTTCAAGCCAACCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAGAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCATATGTTGACTCCATTTTCCCCCAGCTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAACATATTTCTAGAAGGCTAACAAGTCAGTGACAATGTGAATTGTAATAGAAACAGCATATAGTTCTTTTGTCACATTGCACTTCAATGTGTAGGTTTCTTATCAACTGACAGGGAAGAAGCTCCAGTATTGCTTCTTCTGTCCATTGTTGCCATCTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTACATCAATATTGAAGATGCATATTTTATCTTACAGTTCTTTCCTATCTGAGAATTAT

Coding sequence (CDS)

ATGAAGAGACCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGTAGGAGTACAAAATGATGGATTTGAGTTCAAGCCAACCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAGAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCATATGTTGACTCCATTTTCCCCCAGCTATGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

Homology

[Close]

BLAST of Lsi05G016240 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.2e-48
Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 16  SGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF    T        +++  EG L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFSPLDT------SHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.3e-95
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP+LDDFKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.2e-94
Identity = 170/174 (97.70%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP++DDFKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL
Match: A0A1S3AWI8 (protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKP+LDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL
Match: A0A5D3D0B3 (Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKP+LDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL
Match: A0A0A0L8M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.4e-92
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKP+LDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. NCBI nr
Match: XP_038877941.1 (protein RDM1 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP+LDDFKIPAKEMTSEGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. NCBI nr
Match: XP_022979547.1 (protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbita maxima] >XP_022979549.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 356.3 bits (913), Expect = 1.5e-94
Identity = 171/174 (98.28%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP+LDDFKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. NCBI nr
Match: XP_022955802.1 (protein RDM1 [Cucurbita moschata] >XP_022955803.1 protein RDM1 [Cucurbita moschata] >KAG7018727.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 170/174 (97.70%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP++DDFKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. NCBI nr
Match: KAG6582316.1 (Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 170/174 (97.70%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP++DDFKIPAKEMT+EGMLIKRAE
Sbjct: 13  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 72

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 73  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 132

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 133 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 186

[Close]

BLAST of Lsi05G016240 vs. NCBI nr
Match: XP_023527197.1 (protein RDM1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE GVQNDGFEFKP++DDFKIPAKEMT+EG LIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Lsi05G016240 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49
Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 16  SGESSSSDSEVGVQNDGFEFKPTLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF    T        +++  EG L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFSPLDT------SHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:

BLAST of Lsi05G016240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ3	2.2e-48	57.59	Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1	[more]

BLAST of Lsi05G016240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INZ9	7.3e-95	98.28	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1	[more]
A0A6J1GV10	1.2e-94	97.70	protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1	[more]
A0A1S3AWI8	1.2e-92	95.98	protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1	[more]
A0A5D3D0B3	2.0e-92	95.40	Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 P...	[more]
A0A0A0L8M0	4.4e-92	94.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1	[more]

BLAST of Lsi05G016240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877941.1	6.7e-95	98.85	protein RDM1 [Benincasa hispida]	[more]
XP_022979547.1	1.5e-94	98.28	protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbit...	[more]
XP_022955802.1	2.6e-94	97.70	protein RDM1 [Cucurbita moschata] >XP_022955803.1 protein RDM1 [Cucurbita moscha...	[more]
KAG6582316.1	2.6e-94	97.70	Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023527197.1	1.3e-93	97.13	protein RDM1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G016240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22680.1	1.6e-49	57.59	RNA-DIRECTED DNA METHYLATION 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036319	RDM1 superfamily	GENE3D	1.20.120.690	RDM1 protein domain	coord: 53..174 e-value: 1.0E-62 score: 211.4
IPR036319	RDM1 superfamily	SUPERFAMILY	109920	Hypothetical protein At3g22680	coord: 53..173
IPR015270	Protein RDM1, plant	PFAM	PF09187	RdDM_RDM1	coord: 55..173 e-value: 2.7E-66 score: 221.0
IPR015270	Protein RDM1, plant	PANTHER	PTHR36366	PROTEIN RDM1	coord: 1..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..28
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G016240.1	Lsi05G016240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	RNA polymerase V complex
cellular_component	GO:0005634	nucleus