Lsi05G011050 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATTGTTAAAAAGTCCGTATTTTGAAATCTTTCACAAAAGAAAAAGAAAACCTTCCTGAGAGAGGTTTTAGGTTCTTCTCAAGAGATACAGTTAACAAATTCCTCTGTGGCCCGTTAGGGTTTCTGATTTTTATCTCATCATCGTCACTCTCCCTCCTCTATCGCTTTCCCGTCAACTACGACGCCATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGTTTATCTTCTCTTCATTCAATCTCTTTTCTCCTTCATTTCCATCTGCTTATCGGAGTTCCGCCTGCTGATTTTCTAGCAATGCTGTGTCTGTTCTGTAGTTTTGGGGGTGAGTCTGTTTGAACTTTCGTGTTTTATTTTTTCTGTTTTTGTTAATTTGGAACAGTCTTGATGTTTATCGATTTGGGTATTTCTCATTGGATGATTTTGTGATTGTATTGATATGTTAATGATGACTAGTTTGATATATTTTTTTTTCTTTCCACGTTTTATAGGTCAATTAGTTTCATTGGATGTGCATGCTGTTTTTATAAGAACAAATATTTGAATGAAAAAGATGAAACATATTGAAGGATTCCAAGGAGATAACAAACACACTCTAATGGGAGACTGACTATAAAACTCATGGAACTAGACCTCTGTAGAGAAGTAACAAAAACATTAGTCCCCAAGCTCTATGTTTAAGGTTTAAACATAAGTTATTTTTAAATTTAATTTAATTTAATTATATTTATAATGTGTCTACTACTTTGATTGTCCTACTGTGAACTGTCATCTGTTTTAAAGATAGATGACTTTAGCTTTAATGCCTTGGTGCACCTTCTTCTTGTTATTCTTCTGATTTTTATCTTATTTCTTGTTGCTTTGAGTATGTTGTTTGATAAATTTTCTATAGTATTTTGGTTATCACTAAAACCGTATTACATAGAATATTGTTGTTCTTGGAACTTATTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTGAAGGTTTATTTTCTTTTAGAATCTGTGTGCCTTTGAGTGCAAATATTGTGTATTTCATAATTGATAAGCCATGTGTATCCCCAAAACAGAAGAGAATATCACGGTTGCATCAAGAAACAGCTATCAGCTCAGTTAGCATAACTGACGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGTAAGTTTTCTTAGTCTGTGCATTCAAATTTCAAGGCTAATTGTATAATAAAGAATTGAGAGCCTATTTTTGTTTTATTTGATTTGCACTCACTCTATATACATCGCTCACAACTTTGTTGAGTGTTCTATGGGTTTGTAGTATGTAGTCTAGTACTTTCAATGTGCAAGAAATAACTTCTAACATGTCACACAGGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGAGAGCTAAATAAAAATTCTCCGGGGTAAGATATTTTGGAAGCTTTACAATTTGGTATAAGATGTGGGATTTAGCTGCTTTTCTTGCATATTTCATGCTTTGGTTTCTTCTGCATGTATGATGATGGAATAACTTCTGTGTGTAGGTATCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATATAACAATCAGCAGCCGCTGCCACAACAGCAACCACCCAGACAACCACGCATTTATCACAATGCTGTTAGTGAAGGTGATATTAGCAACACTTCATTATTGGATTATGGAACACTACCTTACTTTGTATGGGTTTTGACATATTTCTGGCACTTTTGCAGATCCATATAGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTACCAAGGTGGATACGGCAACTACCAAGGTGGATATGGTCAATACCAAGGTGGTTATGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGGTGAATATGGAACTGTCGAATATTTTCGATAGAAGTAATGCTTTAGGGTTGACTGTATTGCATTTGACTTCATATTGTTCTTGAGTGCGATTTCTAACTCTTGTGAGATTTCTTCATCATAGATAATGGTGGATACTCAAATTGGGGAAGAGGAGGTGGGCGGAGTAGAGGCTGGGCCTACCGTGGTAAGTTTCTTTCTTAACTTTCTCCATGCATCACAAAAATACAAGCCAAGTCTATCTCCGAGTTGACTGTAGAAATGTTTTGAATATAAATGCAACACGGTCGAGTCTTGAAATGCATCGACTTATTGATTTTTCTTCAAAGTTATAACTAGTAATTTAGGGTGGTTTATGTAGCTCTTTAGACGTCTGATCATGTAATGTTTGCAAAATGCTCTTGTGGGAACAAGGCGTTTCAAGCAACTATTATCCTCCTGCAGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGTGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAGACGAAATCAAAACGTATTCGTTTGTTCTTCCTACCTCTTGATTGAGCTATAAATGCTTTGCCTTGGCCAGTGGGATGAATTATCACATATTTGTTTTAATAGCTTGAAATTCAGTTTTTACAATTTCCAGCGTTTTTAGGCAGTGTCTTTTTTTTTTTCCTTTTTTTTTTCTTTTCTTTTCAGATAATATGGGGAATGCAGCATTGTATTTGTGGGGCAAGGTTGCTTTTTTGGTTCCATGTTTTTGCATTTAGCTTAAGGCCAATCAGTTTATTGTTTGCCATTAATGTAATTCGTTTTACCCA GATTGTTAAAAAGTCCGTATTTTGAAATCTTTCACAAAAGAAAAAGAAAACCTTCCTGAGAGAGGTTTTAGGTTCTTCTCAAGAGATACAGTTAACAAATTCCTCTGTGGCCCGTTAGGGTTTCTGATTTTTATCTCATCATCGTCACTCTCCCTCCTCTATCGCTTTCCCGTCAACTACGACGCCATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTGAAGAAGAGAATATCACGGTTGCATCAAGAAACAGCTATCAGCTCAGTTAGCATAACTGACGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGAGAGCTAAATAAAAATTCTCCGGGGTATCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATATAACAATCAGCAGCCGCTGCCACAACAGCAACCACCCAGACAACCACGCATTTATCACAATGCTGTTAGTGAAGATCCATATAGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTACCAAGGTGGATACGGCAACTACCAAGGTGGATATGGTCAATACCAAGGTGGTTATGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGATACTCAAATTGGGGAAGAGGAGGTGGGCGGAGTAGAGGCTGGGCCTACCGTGGCGTTTCAAGCAACTATTATCCTCCTGCAGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGTGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAGACGAAATCAAAACGTATTCGTTTGTTCTTCCTACCTCTTGATTGAGCTATAAATGCTTTGCCTTGGCCAGTGGGATGAATTATCACATATTTGTTTTAATAGCTTGAAATTCAGTTTTTACAATTTCCAGCGTTTTTAGGCAGTGTCTTTTTTTTTTTCCTTTTTTTTTTCTTTTCTTTTCAGATAATATGGGGAATGCAGCATTGTATTTGTGGGGCAAGGTTGCTTTTTTGGTTCCATGTTTTTGCATTTAGCTTAAGGCCAATCAGTTTATTGTTTGCCATTAATGTAATTCGTTTTACCCA ATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACTTCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTGAAGAAGAGAATATCACGGTTGCATCAAGAAACAGCTATCAGCTCAGTTAGCATAACTGACGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGAGAGCTAAATAAAAATTCTCCGGGGTATCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATATAACAATCAGCAGCCGCTGCCACAACAGCAACCACCCAGACAACCACGCATTTATCACAATGCTGTTAGTGAAGATCCATATAGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTACCAAGGTGGATACGGCAACTACCAAGGTGGATATGGTCAATACCAAGGTGGTTATGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGATACTCAAATTGGGGAAGAGGAGGTGGGCGGAGTAGAGGCTGGGCCTACCGTGGCGTTTCAAGCAACTATTATCCTCCTGCAGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGTGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAG MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRIYHNAVSEDPYSQGRGRGRGRGRGWGRGGYGNYQGGYGNYQGGYGQYQGGYGHYQGGSDNYQGGPGYYQDNGGYSNWGRGGGRSRGWAYRGVSSNYYPPAGAGYERGRGGRGYGRGRGRMGGRTRGGGGNQA Homology
BLAST of Lsi05G011050 vs. ExPASy Swiss-Prot
Match: Q8N5L8 (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens OX=9606 GN=RPP25L PE=1 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11 Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy Swiss-Prot
Match: Q99JH1 (Ribonuclease P protein subunit p25-like protein OS=Mus musculus OX=10090 GN=Rpp25l PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.6e-11 Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy Swiss-Prot
Match: Q9SL15 (Glycine-rich protein 3 OS=Arabidopsis thaliana OX=3702 GN=GRP3 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.9e-05 Identity = 45/88 (51.14%), Postives = 46/88 (52.27%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy TrEMBL
Match: A0A5A7UHR2 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00070 PE=4 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 3.1e-143 Identity = 277/286 (96.85%), Postives = 279/286 (97.55%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy TrEMBL
Match: A0A1S3CN30 (protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502782 PE=4 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 3.1e-143 Identity = 277/286 (96.85%), Postives = 279/286 (97.55%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy TrEMBL
Match: A0A1S3C001 (protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1) HSP 1 Score: 516.9 bits (1330), Expect = 5.3e-143 Identity = 276/286 (96.50%), Postives = 278/286 (97.20%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy TrEMBL
Match: A0A5D3DWB1 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00450 PE=4 SV=1) HSP 1 Score: 505.0 bits (1299), Expect = 2.1e-139 Identity = 276/300 (92.00%), Postives = 278/300 (92.67%), Query Frame = 0
BLAST of Lsi05G011050 vs. ExPASy TrEMBL
Match: A0A6J1HGJ3 (keratin, type I cytoskeletal 9 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463892 PE=4 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 5.1e-138 Identity = 272/291 (93.47%), Postives = 278/291 (95.53%), Query Frame = 0
BLAST of Lsi05G011050 vs. NCBI nr
Match: XP_038888001.1 (protein FAM98A-like isoform X2 [Benincasa hispida]) HSP 1 Score: 523.9 bits (1348), Expect = 8.9e-145 Identity = 279/285 (97.89%), Postives = 281/285 (98.60%), Query Frame = 0
BLAST of Lsi05G011050 vs. NCBI nr
Match: XP_038888000.1 (protein FAM98A-like isoform X1 [Benincasa hispida]) HSP 1 Score: 518.1 bits (1333), Expect = 4.9e-143 Identity = 279/289 (96.54%), Postives = 281/289 (97.23%), Query Frame = 0
BLAST of Lsi05G011050 vs. NCBI nr
Match: XP_008465081.1 (PREDICTED: protein FAM98A-like isoform X1 [Cucumis melo] >KAA0054830.1 protein FAM98A-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 517.7 bits (1332), Expect = 6.4e-143 Identity = 277/286 (96.85%), Postives = 279/286 (97.55%), Query Frame = 0
BLAST of Lsi05G011050 vs. NCBI nr
Match: XP_008454508.1 (PREDICTED: protein FAM98A-like isoform X1 [Cucumis melo]) HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142 Identity = 276/286 (96.50%), Postives = 278/286 (97.20%), Query Frame = 0
BLAST of Lsi05G011050 vs. NCBI nr
Match: XP_031737653.1 (RNA-binding protein FUS isoform X1 [Cucumis sativus]) HSP 1 Score: 510.0 bits (1312), Expect = 1.3e-140 Identity = 275/287 (95.82%), Postives = 278/287 (96.86%), Query Frame = 0
BLAST of Lsi05G011050 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 192.6 bits (488), Expect = 4.4e-49 Identity = 178/411 (43.31%), Postives = 201/411 (48.91%), Query Frame = 0
BLAST of Lsi05G011050 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 167.2 bits (422), Expect = 2.0e-41 Identity = 160/337 (47.48%), Postives = 188/337 (55.79%), Query Frame = 0
BLAST of Lsi05G011050 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 165.2 bits (417), Expect = 7.5e-41 Identity = 145/316 (45.89%), Postives = 173/316 (54.75%), Query Frame = 0
BLAST of Lsi05G011050 vs. TAIR 10
Match: AT2G05520.1 (glycine-rich protein 3 ) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06 Identity = 45/88 (51.14%), Postives = 46/88 (52.27%), Query Frame = 0
BLAST of Lsi05G011050 vs. TAIR 10
Match: AT2G05520.2 (glycine-rich protein 3 ) HSP 1 Score: 47.4 bits (111), Expect = 2.3e-05 Identity = 42/76 (55.26%), Postives = 42/76 (55.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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