Lsi05G009770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	histone H1
Location	chr05: 17047906 .. 17052551 (+)
RNA-Seq Expression	Lsi05G009770
Synteny	Lsi05G009770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCAACGAAATTACCAGTAAGATATCATATAGCTTCTCTTTCTTTTCTCTAGATCCCAATTTTCATTCCGATAATCTTCTTCCCTATCCAATTCAATTTCTTCTGTTCCTCGACCTTAATTCTACTTTCGGATTGTGGAATTTGATCTTGTTTCTACTCCAATGGCTACTGAGGAACCGGTGGTGCCGGTGGAGTCTGCGGCGGAGCCGAACAACACCGAACAAGCGGAAGAAAATCCGGCGAACAAGACTGCGAAGTCTAAGAAGTCCAAAGAACCTAAAGAGAAGAAACCTGCTGCTCCTAGAAAACCTAGAAATCCTCCAACTCATCCTCCATATGAAGAGGTGTGTTACTGAGTCCAATTCGGATTATGTAACCGAATTATCTTTCGAATTAATGCTTGGTGTATTGAATCTGTTTAATTGATTTGGTTTGGTGTTTTGATTTCAGATGATTAAGGATGCGATTGTTACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAGGAGAAGCAAAAGCAGCTTCCATCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGGCTTCCGGGAAGTTGGTGAAGGTTAAGAGCTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAACCTGTAGCTGCTAAGCCGAAGCCTAAAGCCGTAGCTAAGCCCAAGGCTGTGGCTAAATCTGCTGCGAAGCCGAAAGCAGCTGCAAAGCCGAAGCCTAAGACGGCTGCCAAACCCAAAGCTGCTCCTAAACCTAAACCTGCTCCAGCTAAGTCAAAGAGCAGTGCTGTTGCGAAGCCGAAAGCTGCAACAAAGACTAAAGCCGCTCCCAAGCCGAAAGCCAAGGAGAAGCCTGCCAAGGTTGCAAGGACATCGACGAGAACCTCACCAGGGAGGAAGGCACCGGCGCCGAAACCGGTGGTGAAGAAAGCACCGGCGGCCAAGAAGGCTCCGACGAAAAGTGTCAAGCCTAAGAAAGTGAAATCGCCAGCGAAAAAGGCTCCGGCTAAAAGAGGAAGGAAGTGAAGGAGATAGATGGTGGCGGCGGTCCTGTAAATCCGTAATCCTTGGGTGTATAGACCCTTACATGCCGTGCTATAGAGGAGTTTACTTCAGACTTTTCGAATTTTTCTTTTATTTGTTTATTTGTAGACCTTTTTTTTTTCTTCTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTTGATTTCAGTTCTCAACCTATGATTTCTATGGGCAATCCGACTACATCAATTTTCAGGAAACGTTTTGTTTCTCTTACGCTCGAAATGGATTTGGATTGGATTGCGTAACCGAAGTTTGAAGCTTTGATGCTAAGCTTGGTAAATCTCAATCTTTCTTGTACTTCTCGCCCCAACTTTCTGTTTGTGTGGTTCCAATTTCGCCTAATATCTGTATGAATTCTCAGATATTTCATTAATTAGCCAATTATACTTCATCATTTCTTAGAAGGGTTGATTGGATGTTAGAGTTTGATCGTAAGTATTGATTCTTTGGGCCAGATGATTTAGCAGCTTTCTCACAATGTATGGTGTGTAATCTAAAGATGTTTGCATTGGTTGGCCCTTGTAGTTTGTTAGCTTTATTCGGTTGTGGATAGATTTGCTGAGGATTTCTTTCACAGGGGGTGGATTAGGTTTTATATACATTACAGTCGTTTGGAGCACAAATTTTTGAAGGATAAGAGAAGCTACCGTTATGAAAACATCAAGGCTAGGAAGACTGCCTATATATAAATCAATGTGGGTATTTGTAAATTGTAGGTTTATGATGTTCTATCAAAGTTAATTTATGGCATATAAGGTGAGATAAGAGCTTGTTGTAGTTTTTAGAATTTGGCTAAGAAGTGAAACTTGATGGAGGGAGAGTTTGTAAAGAAATTGGAAAAAGAAAAACTAGCACAATTTACCCAAACAAAACCAAAACTTAGATGGTTATCAAATGGGGCGGATTCCATTCCTAGGACTAATTTGCGCGCACCTCAAAAGTAACTGGTAGGATAAACATTTGGTTTCAAAAGTAACTTGTAGGATTGAGTAGGTACTTGAATCCATTTATTTTTTACTTGACCTTTGTTGATGATTAAGCCAGTCCATGGTAGTTTCAATTCTAGACTTTCCCTTTAAATACAATAAAGGGGGAATTCCATAGAAGGGTACTTAGGAAAACGAATATAGTAGAAAATCAGAAGGAATTGATGATGGATACTCTCCCTATGCTTCTACATCGCTATCACTCTATAGCATAAGAGTTATGCTATTGCAAGAGCATAACTAATAAGATATAGGAGATTGCAATCACTCCTTAGCAATGCTTCAGGTGACATGCTTGTGAAAACCTCACTAGCTTACTTGGGGGTCACTATTATGAATTAAAATCTCATGCACTATGAGGCACTTTAAGGTTAACTACATAGCAACTTAGCGAGAATGCTAGGTATGTTTATAGAGTGAGATGGTTGAGCATACCTCCTAAATAGCCAAATAGTAGGGGATAAGCACACTTACCTGGTTAGGGAAGTGAAAGAGGTCTTCTAGGTGTGGTGGATAGACTTTGACGAATTGAAAGAAAAAAAATGTGAGCAAGGGAGAAGAAAAGAACAAAAGGAGAAGAAAATAAATAAGAAATGAAGAAGAGAAGAAAGAAGAAATGGAGAATTTAAGGAGCAGAGAAAGAGAGGAGGGAGACAAGAAATTGACAGGCAAAGTAGAAAAAAAAAGAGAATATAATAATAATAATAATTATTATTATTATTTATATATATTCAACCAGTTTTGTTGGCCGACTGACAATTGATTTTGCTCCTTCAATCGACCATGCCAACTAATTGAAGTTGGTTTGGCCAGCTTCAATTGGTCGACTTGGTTGGCCAGCTTTGTTTGCTCACCCCTAGTGGGATGGAATTTAAGAGACTTATTTTGAAAGATCACTTGTTTTCGGCCAACCAATGAGTAAGTGACACATTCGTTAAGGGAGTTTGTATCCTTGAACACAAAAGTGACGTATCCTCTTCTAGGGTTATTTATCTTTGATTGGCTTAGGTGTCTTACAACATTAGAGTTATGGGTTAGGCATGTGAACATAGGGGAGAAATGATTGTTTCTCATCTTATAAATATTGGAGGCCTATTAATCCTCATTGTTGAGGTACTTAGAACTATGAATTCCTCCGTGCTTAGCTCAGTGCAAGCTCTAGTCTGACTCAAACATAGGAGGAGGGTGTTTGGCAAACAACACCAGCTCTTTATTTCTAGGTTTTCAAAGGTCCCCTCTTTTCCTCCCATAGCTTCATTCGTTTTGGAAGGTAGCTAAAGGACTGCCTTAGAAGAAAAAGAAAAATTGGAAAAGATAAACAAATGTGGACGGCTGAGAGCCAGCAACCATAGCAAACTTCCCTTTACTTTAGCTGTCTCCATTAAAAAGAAAAATAGAAAAAGCTTGGTGATGGGCTAGAAGATATGTGGATGTTTCTCTTCCATTCAGTTGGATGGTTATTTAGCCTGTTCTCCCTTTATTCTCATCCTGGATATCATGGAGAATGAATAATGTCCTAAGAATATTAGAGTGCGCCTTGCATTTGTCCCCAATACTGAGAGGCATCAAAATTGCTATCTACAAGAGAAATCTCCAAGGTCGTCTTTACCTTAACTGGTGCTCTGTGTAGACAAAGTGTGAAAGAAAGGTGTTGTCTAGTTTTGCTAGAGATGTTGAATAACTATTTCCAATCCCAAAAGTGCCACATTTCAAAGTTCTGGCCAAATACTTTGTGTTACTAAAGTGGCTGTTTTGTGGGATTTGCAGCTGGAGAAAGGAACTCATAAAATGGAGCGGGATCATATTTGTGCAGTTCGAGGGACTTCAACTATAGATCAGGTTTGCTGCTACTCAAATTTAGCCTTTACAGATTCCTCACTGTTTGATCCTTCTGCTGGAATTTGGAAAATTTCAACTTAAATTCTTTCTTCATTTTTATCCGTGGAGGTGGAGGGTATATTGCTTCCAACCAGAACAATGAAGTATATCTTGAAATCAAAGCTCAATTAGACTTTCCAAGCTTTTATTTGGTCCATTTGCTGCCCAGAAATTCAACAGCAATGATGGGATCCACGGAAGATTCCCTTGGTTCTGCACTCACAAAGATGTTTGGAGTGTGAAATGCTAGGGAAGATCTAGATCATTATTTTGACTGTTATTTCTTTAGAACTTCATGGCATTCTTTTAAAACTCGGATGATAATGGGTCATCCGTGGACCAATCAATTGCTTGTACCCAGTGTCTAGGACAAAACTTCCATCATTCCTTCGCAAATGCAACTCTTGTGTTTCTTTGGGAAATTTGGGAGGTGAAATAAAGATGTTTGGGAAGACAAAGTTTTTCTCTCTTTAGGCTCCTATTATTAGGCTTTCCCCCCCTTTTTGTAAGTTCCTAGGAAGCGCGGGCACATGTTGGACATGGATACATTCGGACAAGCTATGGACATAGGTCTAACATGCTGAAAATGTGTTGAAGTTGATATATATATATATATATATATAT

mRNA sequence

CTCGCAACGAAATTACCAGTAAGATATCATATAGCTTCTCTTTCTTTTCTCTAGATCCCAATTTTCATTCCGATAATCTTCTTCCCTATCCAATTCAATTTCTTCTGTTCCTCGACCTTAATTCTACTTTCGGATTGTGGAATTTGATCTTGTTTCTACTCCAATGGCTACTGAGGAACCGGTGGTGCCGGTGGAGTCTGCGGCGGAGCCGAACAACACCGAACAAGCGGAAGAAAATCCGGCGAACAAGACTGCGAAGTCTAAGAAGTCCAAAGAACCTAAAGAGAAGAAACCTGCTGCTCCTAGAAAACCTAGAAATCCTCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTTACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAGGAGAAGCAAAAGCAGCTTCCATCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGGCTTCCGGGAAGTTGGTGAAGGTTAAGAGCTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAACCTGTAGCTGCTAAGCCGAAGCCTAAAGCCGTAGCTAAGCCCAAGGCTGTGGCTAAATCTGCTGCGAAGCCGAAAGCAGCTGCAAAGCCGAAGCCTAAGACGGCTGCCAAACCCAAAGCTGCTCCTAAACCTAAACCTGCTCCAGCTAAGTCAAAGAGCAGTGCTGTTGCGAAGCCGAAAGCTGCAACAAAGACTAAAGCCGCTCCCAAGCCGAAAGCCAAGGAGAAGCCTGCCAAGGTTGCAAGGACATCGACGAGAACCTCACCAGGGAGGAAGGCACCGGCGCCGAAACCGGTGGTGAAGAAAGCACCGGCGGCCAAGAAGGCTCCGACGAAAAGTGTCAAGCCTAAGAAAGTGAAATCGCCAGCGAAAAAGGCTCCGGCTAAAAGAGGAAGGAAGTGAAGGAGATAGATGGTGGCGGCGGTCCTGTAAATCCGTAATCCTTGGGTGTATAGACCCTTACATGCCGTGCTATAGAGGAGTTTACTTCAGACTTTTCGAATTTTTCTTTTATTTGTTTATTTGTAGACCTTTTTTTTTTCTTCTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTTGATTTCAGTTCTCAACCTATGATTTCTATGGGCAATCCGACTACATCAATTTTCAGGAAACGTTTTGTTTCTCTTACGCTCGAAATGGATTTGGATTGGATTGCGTAACCGAAGTTTGAAGCTTTGATGCTAAGCTTGCTGGAGAAAGGAACTCATAAAATGGAGCGGGATCATATTTGTGCAGTTCGAGGGACTTCAACTATAGATCAGGTGGAGGGTATATTGCTTCCAACCAGAACAATGAAGTATATCTTGAAATCAAAGCTCAATTAGACTTTCCAAGCTTTTATTTGGTCCATTTGCTGCCCAGAAATTCAACAGCAATGATGGGATCCACGGAAGATTCCCTTGGTTCTGCACTCACAAAGATGTTTGGAGTGTGAAATGCTAGGGAAGATCTAGATCATTATTTTGACTGTTATTTCTTTAGAACTTCATGGCATTCTTTTAAAACTCGGATGATAATGGGTCATCCGTGGACCAATCAATTGCTTGTACCCAGTGTCTAGGACAAAACTTCCATCATTCCTTCGCAAATGCAACTCTTGTGTTTCTTTGGGAAATTTGGGAGGTGAAATAAAGATGTTTGGGAAGACAAAGTTTTTCTCTCTTTAGGCTCCTATTATTAGGCTTTCCCCCCCTTTTTGTAAGTTCCTAGGAAGCGCGGGCACATGTTGGACATGGATACATTCGGACAAGCTATGGACATAGGTCTAACATGCTGAAAATGTGTTGAAGTTGATATATATATATATATATATATAT

Coding sequence (CDS)

ATGGCTACTGAGGAACCGGTGGTGCCGGTGGAGTCTGCGGCGGAGCCGAACAACACCGAACAAGCGGAAGAAAATCCGGCGAACAAGACTGCGAAGTCTAAGAAGTCCAAAGAACCTAAAGAGAAGAAACCTGCTGCTCCTAGAAAACCTAGAAATCCTCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTTACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAGGAGAAGCAAAAGCAGCTTCCATCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGGCTTCCGGGAAGTTGGTGAAGGTTAAGAGCTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAACCTGTAGCTGCTAAGCCGAAGCCTAAAGCCGTAGCTAAGCCCAAGGCTGTGGCTAAATCTGCTGCGAAGCCGAAAGCAGCTGCAAAGCCGAAGCCTAAGACGGCTGCCAAACCCAAAGCTGCTCCTAAACCTAAACCTGCTCCAGCTAAGTCAAAGAGCAGTGCTGTTGCGAAGCCGAAAGCTGCAACAAAGACTAAAGCCGCTCCCAAGCCGAAAGCCAAGGAGAAGCCTGCCAAGGTTGCAAGGACATCGACGAGAACCTCACCAGGGAGGAAGGCACCGGCGCCGAAACCGGTGGTGAAGAAAGCACCGGCGGCCAAGAAGGCTCCGACGAAAAGTGTCAAGCCTAAGAAAGTGAAATCGCCAGCGAAAAAGGCTCCGGCTAAAAGAGGAAGGAAGTGA

Protein sequence

MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFKLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAAPKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVKKAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK

Homology

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BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-49
Identity = 184/297 (61.95%), Postives = 197/297 (66.33%), Query Frame = 0


Query: 1   MATEEPVV---PVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHP 60
           MATEEPV+    VE  A P  T + E NP  K+ K+K  KE K KKPAAPRK    PTHP
Sbjct: 1   MATEEPVIVNEVVEEQAAP-ETVKDEANPPAKSGKAK--KETKAKKPAAPRKRSATPTHP 60

Query: 61  PYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVK 120
           PY EMIKDAIVTLKERTGSSQ+AITKFIEEKQK LPSNFKKLLL  LKK VAS KLVKVK
Sbjct: 61  PYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVK 120

Query: 121 SSFKLKPAKSAVVKPASPAKKKPVAAKPKP--------KAVAKPKAVAKSAAKPKAAAKP 180
           +S+KL P+ S     A PAKKKP AAK KP        K  AKP A AK AAK K AAK 
Sbjct: 121 NSYKL-PSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKA 180

Query: 181 KP----KTAAKPKAAPKPKP-APAKSKSSAVAKPKAATKTKAAP-------KP--KAKEK 240
           KP    K AAK K A K KP A AK K++A AKPKAA K KAAP       KP  KAK  
Sbjct: 181 KPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTT 240

Query: 241 PAKVARTSTRTSPGRKAPAPKPVVKKAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
            AKVA+T+TRT+P RKA AP     KA  AKK P K    K VKSPAKKA  KRGRK
Sbjct: 241 TAKVAKTATRTTPSRKA-AP-----KATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-48
Identity = 164/281 (58.36%), Postives = 185/281 (65.84%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQA---------EENPANKTAKSKKSKEPKEKKPAAPRKPR 60
           MATEEP+V VE+  EP  TE           +E P  +  K+KK+K  K KK +   KPR
Sbjct: 1   MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKAS---KPR 60

Query: 61  NPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASG 120
           NP +HP YEEMIKDAIV+LKE+ GSSQYAI KFIEEKQKQLP+NFKKLLL +LKK VASG
Sbjct: 61  NPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASG 120

Query: 121 KLVKVKSSFKLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAV-AKSAAKPKAAAKPK 180
           KL+KVK SFKL           S A KKP  AKPK K  AK K+V AK AAKPKA A  K
Sbjct: 121 KLIKVKGSFKL-----------SAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVK 180

Query: 181 PKTAAKPKA-APKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPG 240
           PK A+K KA A KPK A AK K+ A      A K KA  KPK+K KPAKVA+TS +T+PG
Sbjct: 181 PKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPG 240

Query: 241 RKAPAPKPVVKKAPAAKKAPTKSVKPKKVKSPAKKAPAKRG 271
           +K  A K V     AAKK P KSVK K VKSP KK   KRG
Sbjct: 241 KKVAAVKKV-----AAKKVPVKSVKAKSVKSPVKKVSVKRG 262

[Close]

BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.7e-42
Identity = 163/286 (56.99%), Postives = 186/286 (65.03%), Query Frame = 0


Query: 1   MATEEPVVP--VESAAEPNNTEQAEENPANKTAKSKKSKEPK-EKKP---AAPRKPRNPP 60
           M+ EE  VP  V+S A     +  E+ PA K  KSKK+   K  KKP   AAP K +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LP  F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLKPAKSAVV-KPASPAKKK-PVAAKPKPK-----AVAKPKAVAKSAAKPKAAA 180
           KVK+SFK+  A+SA   KPA+P KKK  V AKPK K     A AK KA AK   KP A  
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKV 180

Query: 181 KPKPKTAAKPKAAPKPKPAPAKSKSSAVAKPKAATKTKA-APKPKAKEKPAKVARTSTRT 240
             K K  AKPKA    K   AK KS +VA   A +KTKA A KPKAKE+PAK +RTSTRT
Sbjct: 181 VAKAKVTAKPKA----KVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRT 240

Query: 241 SPGRKAPAPKPVVKKAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           SPG+K  AP    KK    KKAP KSV   KVKSPAK+A  ++ +K
Sbjct: 241 SPGKKVAAP---AKKVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.1e-33
Identity = 134/260 (51.54%), Postives = 158/260 (60.77%), Query Frame = 0


Query: 12  SAAEPNNTEQAEENPANKTAKSKKSKEPKEKKP-AAPRKPRNPPTHPPYEEMIKDAIVTL 71
           +A  P      E+ PA K  K+K  KE KEKK  AA  K R   +HP YEEMIKDAIVTL
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTL 76

Query: 72  KERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFKLKPAKSAVV 131
           KERTGSSQYAI KFIEEK+K+LP  F+KLLL +LK+LVASGKLVKVK+SFKL  A +   
Sbjct: 77  KERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKAS 136

Query: 132 KPASPAKKK-PVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAAPKPKPAPAK 191
            P + A+K  P   KP   AV K K    +A+K K     KPKTAA  K   K K  P  
Sbjct: 137 SPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVP 196

Query: 192 SKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVKKAPAAKKAP 251
             ++A  K KA        KPKAK +PAK A+T+  TSP +KA A    V      KK P
Sbjct: 197 RATAAATKRKAVD-----AKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 256

Query: 252 TKS-VKPKKVKSPAKKAPAK 269
            K  VKPK VKSPAK+A ++
Sbjct: 257 VKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot
Match: P27806 (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-30
Identity = 138/272 (50.74%), Postives = 163/272 (59.93%), Query Frame = 0


Query: 2   ATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYEE 61
           A + PV  VE AA     + A + PA K AK+ K+ + K+  P  P+KPR  P HP Y E
Sbjct: 7   AADIPVPQVEVAA-----DAAVDTPAAKPAKAPKAAKAKKSTP-GPKKPRVTPAHPSYAE 66

Query: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQK-QLPSNFKKLLLFHLKKLVASGKLVKVKSSF 121
           M+ +AI  LKER+GSS  AI KFIE+K K  LP+NF+K+LL  +KKLVA+GKL KVK S+
Sbjct: 67  MVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSY 126

Query: 122 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 181
           KL  A +A VKP +  KKKP AAKPK KA AK K  AKS AK KAAAKPK K        
Sbjct: 127 KLAKAPAA-VKPKTATKKKP-AAKPKAKAPAK-KTAAKSPAK-KAAAKPKAK-------- 186

Query: 182 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 241
                APAK+K  AVAKPKAA K KAA KPKAK    K               AP     
Sbjct: 187 -----APAKAK--AVAKPKAAAKPKAAAKPKAKAAAKK---------------APAAATP 238

Query: 242 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           K PAA+K PTK   P K  +PAKK  AK+ +K
Sbjct: 247 KKPAARKPPTKRATPVKKAAPAKKPAAKKAKK 238

[Close]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL
Match: A0A5A7UQL0 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.7e-111
Identity = 256/272 (94.12%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK KAVAKPKAVAKS AKPKAAAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK AP KSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKKAP+KRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL
Match: A0A1S3BL93 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.7e-111
Identity = 256/272 (94.12%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK KAVAKPKAVAKS AKPKAAAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK AP KSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKKAP+KRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL
Match: A0A6J1CWP2 (histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.7e-111
Identity = 253/272 (93.01%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP + E AEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTSAEAAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI DAIVTLKERTGSSQYAITKFIEEKQK LPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKP SPAKKKP AAKPKPKA AK KAVAKS AKPKAAAKPKPKTAAKPKAA
Sbjct: 121 KLKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGR+APAPKP  K
Sbjct: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPAPK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP KSVK KKVKSPAKKAPAKRG+K
Sbjct: 241 KAPAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL
Match: A0A0A0KDR2 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G407650 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.1e-109
Identity = 250/272 (91.91%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENPANK+ +SKKSKEPK+KKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPANKSGRSKKSKEPKDKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK K VAKPKAVAKS AKPKAAAKPKPK   KPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK APAKSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKK+PAKRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL
Match: A0A6J1ES19 (histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111437275 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.1e-102
Identity = 240/272 (88.24%), Postives = 251/272 (92.28%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N E AEENPANK AKSKKSK+PKEKKPAA RK RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEPAEENPANKAAKSKKSKQPKEKKPAAARKTRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLK AKSA+VKPASPA K+P AAKPKPKA AK KAVAKS+AKPKAAAKPKPKTAAKPKAA
Sbjct: 121 KLKSAKSAIVKPASPA-KRPAAAKPKPKAAAKTKAVAKSSAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
            KPKP  AKSKSS VAKPKAA+KTKAAPKPKAKEKPAK +RTSTRTSPG+KAPAPKP VK
Sbjct: 181 AKPKPTAAKSKSSVVAKPKAASKTKAAPKPKAKEKPAKASRTSTRTSPGKKAPAPKPAVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPA+KKAP KSV  KKVKSPA+KAPA+R +K
Sbjct: 241 KAPASKKAPAKSVPAKKVKSPARKAPARRAKK 271

[Close]

BLAST of Lsi05G009770 vs. NCBI nr
Match: XP_008449373.1 (PREDICTED: histone H1 [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 3.6e-111
Identity = 256/272 (94.12%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK KAVAKPKAVAKS AKPKAAAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK AP KSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKKAP+KRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. NCBI nr
Match: KAA0057394.1 (histone H1 [Cucumis melo var. makuwa] >TYK30091.1 histone H1 [Cucumis melo var. makuwa])

HSP 1 Score: 412.1 bits (1058), Expect = 3.6e-111
Identity = 256/272 (94.12%), Postives = 258/272 (94.85%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK KAVAKPKAVAKS AKPKAAAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK AP KSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKKAP+KRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. NCBI nr
Match: XP_022145924.1 (histone H1 [Momordica charantia])

HSP 1 Score: 409.8 bits (1052), Expect = 1.8e-110
Identity = 253/272 (93.01%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP + E AEENP NK AKSKKSKEPKEKKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTSAEAAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI DAIVTLKERTGSSQYAITKFIEEKQK LPSNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKP SPAKKKP AAKPKPKA AK KAVAKS AKPKAAAKPKPKTAAKPKAA
Sbjct: 121 KLKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGR+APAPKP  K
Sbjct: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPAPK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP KSVK KKVKSPAKKAPAKRG+K
Sbjct: 241 KAPAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of Lsi05G009770 vs. NCBI nr
Match: XP_004140078.1 (histone H1 [Cucumis sativus] >KGN47855.1 hypothetical protein Csa_003138 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 1.7e-108
Identity = 250/272 (91.91%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP N EQAEENPANK+ +SKKSKEPK+KKPAAPRKPRNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPANKSGRSKKSKEPKDKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSAVVKPASPAKKKPVAAKPK K VAKPKAVAKS AKPKAAAKPKPK   KPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPK APAKSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVK
Sbjct: 181 PKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KAPAAKKAP+KSVK KKVKS AKK+PAKRG K
Sbjct: 241 KAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 272

[Close]

BLAST of Lsi05G009770 vs. NCBI nr
Match: XP_038888055.1 (histone H1-like [Benincasa hispida])

HSP 1 Score: 402.1 bits (1032), Expect = 3.7e-108
Identity = 250/272 (91.91%), Postives = 257/272 (94.49%), Query Frame = 0


Query: 1   MATEEPVVPVESAAEPNNTEQAEENPANKTAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60
           MATEEPVVPVESAAEP+N EQAEENPANK AKSKKSKEPKEKKPAA +K RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPDNVEQAEENPANKAAKSKKSKEPKEKKPAARKKTRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEK+KQLP NFKK+LLFHLKKLVASGKLVKVK+SF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKEKQLPPNFKKILLFHLKKLVASGKLVKVKNSF 120

Query: 121 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 180
           KLKPAKSA+VKPA+PAKKKPVAAKPK KAVAKPKAVAKS AKPKAAAKPKPKTAAKPKAA
Sbjct: 121 KLKPAKSAIVKPAAPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVK 240
           PKPKPA AKSKSSAVAKPKAA KTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKP VK
Sbjct: 181 PKPKPATAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPAVK 240

Query: 241 KAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           KA A KKAP KSVK KKVKSPAKKA AKRGRK
Sbjct: 241 KAQATKKAPAKSVKAKKVKSPAKKALAKRGRK 272

[Close]

BLAST of Lsi05G009770 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-43
Identity = 163/286 (56.99%), Postives = 186/286 (65.03%), Query Frame = 0


Query: 1   MATEEPVVP--VESAAEPNNTEQAEENPANKTAKSKKSKEPK-EKKP---AAPRKPRNPP 60
           M+ EE  VP  V+S A     +  E+ PA K  KSKK+   K  KKP   AAP K +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LP  F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLKPAKSAVV-KPASPAKKK-PVAAKPKPK-----AVAKPKAVAKSAAKPKAAA 180
           KVK+SFK+  A+SA   KPA+P KKK  V AKPK K     A AK KA AK   KP A  
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKV 180

Query: 181 KPKPKTAAKPKAAPKPKPAPAKSKSSAVAKPKAATKTKA-APKPKAKEKPAKVARTSTRT 240
             K K  AKPKA    K   AK KS +VA   A +KTKA A KPKAKE+PAK +RTSTRT
Sbjct: 181 VAKAKVTAKPKA----KVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRT 240

Query: 241 SPGRKAPAPKPVVKKAPAAKKAPTKSVKPKKVKSPAKKAPAKRGRK 273
           SPG+K  AP    KK    KKAP KSV   KVKSPAK+A  ++ +K
Sbjct: 241 SPGKKVAAP---AKKVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of Lsi05G009770 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.5e-34
Identity = 134/260 (51.54%), Postives = 158/260 (60.77%), Query Frame = 0


Query: 12  SAAEPNNTEQAEENPANKTAKSKKSKEPKEKKP-AAPRKPRNPPTHPPYEEMIKDAIVTL 71
           +A  P      E+ PA K  K+K  KE KEKK  AA  K R   +HP YEEMIKDAIVTL
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTL 76

Query: 72  KERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFKLKPAKSAVV 131
           KERTGSSQYAI KFIEEK+K+LP  F+KLLL +LK+LVASGKLVKVK+SFKL  A +   
Sbjct: 77  KERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKAS 136

Query: 132 KPASPAKKK-PVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAAPKPKPAPAK 191
            P + A+K  P   KP   AV K K    +A+K K     KPKTAA  K   K K  P  
Sbjct: 137 SPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVP 196

Query: 192 SKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVKKAPAAKKAP 251
             ++A  K KA        KPKAK +PAK A+T+  TSP +KA A    V      KK P
Sbjct: 197 RATAAATKRKAVD-----AKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 256

Query: 252 TKS-VKPKKVKSPAKKAPAK 269
            K  VKPK VKSPAK+A ++
Sbjct: 257 VKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of Lsi05G009770 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 111.7 bits (278), Expect = 9.4e-25
Identity = 110/213 (51.64%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 1   MATEEPVVP--VESAAEPNNTEQAEENPANKTAKSKKSKEPK-EKKP---AAPRKPRNPP 60
           M+ EE  VP  V+S A     +  E+ PA K  KSKK+   K  KKP   AAP K +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LP  F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLKPAKSAVV-KPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKT 180
           KVK+SFK+  A+SA   KPA+P KKK          VAKPK     A++      P  K 
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKAT-------VVAKPK-----ASRTSTRTSPGKKV 180

Query: 181 AAKPKAAPKPKPAPAKS-KSSAVAKPKAATKTK 206
           AA  K     K APAKS K  + AK  +  K K
Sbjct: 181 AAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAK 201

[Close]

BLAST of Lsi05G009770 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-09
Identity = 68/168 (40.48%), Postives = 92/168 (54.76%), Query Frame = 0


Query: 42  KKPAAPRKPRNP--PTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQ-LPSNFKK 101
           KK  A +KPR P   THPPY +MIK+A++ LKE+ GSS YAI K IEEK K  LP +F+K
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 102 LLLFHLKKLVASGKLVKVKSSFKLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAK 161
            L   LK  VA GKLVK+++S+KL      + +      KK +  K + K + K +  + 
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNM--KQEDKEITK-RTRSS 127

Query: 162 SAAKPKAAAKPKPKTAAKPKAAPKPKPAPAKSKSSAVAKPKAATKTKA 207
           S    K  +  K +   K K A +P     KS  S+V K KA   + A
Sbjct: 128 STRPKKTVSVNKQEKKRKVKKARQP-----KSIKSSVGKKKAMKASAA 167

[Close]

BLAST of Lsi05G009770 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 45.1 bits (105), Expect = 1.1e-04
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQ-LPSNFKKLLLFHLKKLVASGKLVKVKSSF 121
           MIK+A++ LKE+ GSS YAI K IEEK K  LP +F+K L   LK  VA GKLVK+++S+
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 122 KLKPAKSAVVKPASPAKKKPVAAKPKPKAVAKPKAVAKSAAKPKAAAKPKPKTAAKPKAA 181
           KL      + +      KK +  K + K + K +  + S    K  +  K +   K K A
Sbjct: 61  KLSDTTKMITRQQDKKNKKNM--KQEDKEITK-RTRSSSTRPKKTVSVNKQEKKRKVKKA 120

Query: 182 PKPKPAPAKSKSSAVAKPKAATKTKA 207
            +P     KS  S+V K KA   + A
Sbjct: 121 RQP-----KSIKSSVGKKKAMKASAA 138

The following BLAST results are available for this feature:

BLAST of Lsi05G009770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	1.4e-49	61.95	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P08283	2.6e-48	58.36	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P26569	3.7e-42	56.99	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P26568	9.1e-33	51.54	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]
P27806	4.2e-30	50.74	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]

BLAST of Lsi05G009770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQL0	1.7e-111	94.12	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=...	[more]
A0A1S3BL93	1.7e-111	94.12	histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1	[more]
A0A6J1CWP2	8.7e-111	93.01	histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1	[more]
A0A0A0KDR2	8.1e-109	91.91	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G407650 PE=3 SV...	[more]
A0A6J1ES19	1.1e-102	88.24	histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111437275 PE=3 SV=1	[more]

BLAST of Lsi05G009770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449373.1	3.6e-111	94.12	PREDICTED: histone H1 [Cucumis melo]	[more]
KAA0057394.1	3.6e-111	94.12	histone H1 [Cucumis melo var. makuwa] >TYK30091.1 histone H1 [Cucumis melo var. ...	[more]
XP_022145924.1	1.8e-110	93.01	histone H1 [Momordica charantia]	[more]
XP_004140078.1	1.7e-108	91.91	histone H1 [Cucumis sativus] >KGN47855.1 hypothetical protein Csa_003138 [Cucumi...	[more]
XP_038888055.1	3.7e-108	91.91	histone H1-like [Benincasa hispida]	[more]

BLAST of Lsi05G009770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	2.6e-43	56.99	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	6.5e-34	51.54	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	9.4e-25	51.64	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	1.9e-09	40.48	histone H1-3	[more]
AT2G18050.2	1.1e-04	38.36	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 142..156 score: 34.81 coord: 194..213 score: 25.0 coord: 42..63 score: 37.37 coord: 172..189 score: 53.09 coord: 69..86 score: 43.21
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 e-value: 2.7E-34 score: 129.9
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 e-value: 2.5E-19 score: 69.4
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 55..124 score: 30.695316
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..133 e-value: 4.49129E-20 score: 80.3579
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 51..129 e-value: 1.9E-22 score: 81.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..272
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 2..272
None	No IPR available	PANTHER	PTHR11467:SF131	HISTONE H1.1	coord: 2..272
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 50..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009770.1	Lsi05G009770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding