Lsi05G009690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHistone H2A
Locationchr05: 16895996 .. 16897959 (-)
RNA-Seq ExpressionLsi05G009690
SyntenyLsi05G009690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTTCGCTTCTACGATCTTCAGGTTTCTTCTCTCTCATTTCTAACTTTTAATTTTCTTTCCATCTCTCTAGATTTCGATTCCGATTCTTTCAATTTCCTTGTTCCCCGATCCAGATCTGTATACAAATCGTTCATTACTTCCCCGTTGTTGATTCTCTTTTAATCAGCGATTATTCGCGAATTCACTCTGTTCAAACATTTTTTGCAGGTTGAATAATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGGTACTCTTTTGAATTCTTACCCGACGAATGAAACTTTAAAATCGTTAGTGTCTTTTCCGTGGGATGTTTGACTTTTTTTCTCCCAATCTTACAATTTCGAACGATTTTTATATTTTATTTAATTTAAATAAGGTTTATGGTAACAAGGTTAGTCAATTATGTTGATGTATCTGCATATTGTTGTGTTTGTTCCTTAGACTTCTTTTGTAATAACATTTTTTGTTGACAGCTATGAATTTTTACACATTGGACTCTGAAATTATTATACAATTCTTTGTTTAGGGGAAAAGTGTGAAGTAGTATTTTTGTGGGTTGGACTTCAAATTTGCAATTCAGATGCCCATGTATTAAAGCTACATGTAGTTGATATTTGTACGGTTATGTTGATGTATCTACATATTGTGATCTGTGTTCCTTAAATTTTTACTGTTCCTTAAATTCGTTTGTGGGTTGGGCTGAAAATTCAGAATTCTAATGCCTATGTCCTTCTTGAGCAACATTTAGTTAACATTACTACAATTATGTTGATGTATCTGCACATTGTGATCGTTGTTCCTTAAATTTTGACTACAATACATTGACAGTTTTGAATTTAAACTTGAGACTCTGAAAGCTCTTTAAATTCTTTGTTTATGGGGGTAAGTGTAAGGTAGGTTTTTGACGGTTGGGCTGTAAATTCGCAATTCCAATGCCCGTGTTCTTTTTTAAGCTACATGTAGTTAAGATTAGTACAATTATGTAATATCATATTTTCTTAATAGCTTTGGATTTTTACATGGGGATCTGAAATGTAATCTTTTTTATTTATTTGTTCAAGGTGAAAGTGTAATTAAGCTAATTTGTTTGTGAGTTGGGCTGATATTTGATAATTTGCAATTCAAATGCTCATGTAGTTTTTTTTTCAAAACTACCAGTGGGTTGAGTTCAAATAGTTCCTCTTCATTTAGCCTTGAATTTCCCCATTATTGGGTCACTTAACTTATGTAGTCTCGGGATTGTGGGGTTTTAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACGTTCACTTGTATCTTTAAGTAATCTTTAGCTTAATCTAGACTGTAGATGAAGACATTTAATTGGCATCCAAGAATTAGCTTCCCTGCTTGCTTTTGTGAAGCTTTGTTACTTCCTCTCCCCCATCTCTTTTGTCTATTTGGTTGGACAAGTATACTTGTTCAGTGTAAGATTGTTATCTTGTTGTATGGTTTTTAATTTAGATTACTTTCTACAAGTTTGTTTGGATGGTTCATTGGGATTCTGGATATTGTCCTTTCTCTTTTGATAAATATCTGGTTATTGTCTTAGTTTTATACATATAAACTATCATGGATGTGCAA

mRNA sequence

CTTCTCTTCGCTTCTACGATCTTCAGGTTTCTTCTCTCTCATTTCTAACTTTTAATTTTCTTTCCATCTCTCTAGATTTCGATTCCGATTCTTTCAATTTCCTTGTTCCCCGATCCAGATCTGTTGAATAATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACGTTCACTTGTATCTTTAAGTAATCTTTAGCTTAATCTAGACTGTAGATGAAGACATTTAATTGGCATCCAAGAATTAGCTTCCCTGCTTGCTTTTGTGAAGCTTTGTTACTTCCTCTCCCCCATCTCTTTTGTCTATTTGGTTGGACAAGTATACTTGTTCAGTGTAAGATTGTTATCTTGTTGTATGGTTTTTAATTTAGATTACTTTCTACAAGTTTGTTTGGATGGTTCATTGGGATTCTGGATATTGTCCTTTCTCTTTTGATAAATATCTGGTTATTGTCTTAGTTTTATACATATAAACTATCATGGATGTGCAA

Coding sequence (CDS)

ATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Protein sequence

MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Homology
[Close]
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.9e-64
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLVAAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK +K+
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-59
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-59
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAAN--KDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGR 60
           MAGKGGKGL+AAKT AA    DKDKD+KK P+SRSSRAGIQFPVGRIHR LK R+SANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKASKD 137
           GGGVIPHIHKSLINK +K+
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.3e-59
Identity = 122/138 (88.41%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAA-NKDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGRV 60
           MAGKGGKGL+AAKT AA + DKDKDKKK P+SRSSRAG+QFPVGRIHR LK+R SA+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKASKD 137
           GGVIPHIHKSLINK SK+
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-58
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAA-NKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVG 60
           MAGKGGKGL+AAKT AA + +KDK KK P+SRSSRAG+QFPVGRIHR LK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKASKD 137
           GVIPHIHKSLINK+SK+
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1K687 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111491533 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A1S3BLU8 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A0A0LLQ9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G225360 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1EWU9 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111437256 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1CX53 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111015234 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTP+ANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPSANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_004145372.1 (histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 histone H2A variant 1 [Cucumis sativus] >XP_008449356.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_008449358.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_022930908.1 histone H2A variant 1 [Cucurbita moschata] >XP_022967517.1 histone H2A variant 1 [Cucurbita maxima] >XP_022996250.1 histone H2A variant 1 [Cucurbita maxima] >XP_023532530.1 histone H2A variant 1 [Cucurbita pepo subsp. pepo] >XP_031737443.1 histone H2A variant 1 [Cucumis sativus] >XP_038887488.1 histone H2A variant 1 [Benincasa hispida] >XP_038887489.1 histone H2A variant 1 [Benincasa hispida] >KGN61697.1 hypothetical protein Csa_006318 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_022145883.1 (histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant 1 [Momordica charantia])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTP+ANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPSANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_022963902.1 (histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011211.1 Histone H2A variant 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+A+KTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLASKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_023511677.1 (histone H2A variant 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKTPAA KDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAATKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lsi05G009690 vs. NCBI nr
Match: KAF3961702.1 (hypothetical protein CMV_013715 [Castanea mollissima])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKK+P+S+SSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKDKKRPVSKSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK SKD
Sbjct: 121 VIPHIHKSLINKTSKD 136

[Close]
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-65
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLVAAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK +K+
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-57
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           M+GKG KGL+  K   +  DKDKDKKKPI+RSSRAG+QFPVGR+HR LKTR +A+GRVGA
Sbjct: 1   MSGKGAKGLIMGK--PSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK++K+
Sbjct: 121 VIPHIHKSLINKSAKE 134

The following BLAST results are available for this feature:
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O236282.9e-6493.38Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q9SII02.8e-5988.24Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2... [more]
Q8S8574.8e-5987.77Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q8H7Y86.3e-5988.41Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q84MP72.4e-5886.86Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K6873.2e-6699.26Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111491533 PE=3 SV=1[more]
A0A1S3BLU83.2e-6699.26Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1[more]
A0A0A0LLQ93.2e-6699.26Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G225360 PE=3 SV=1[more]
A0A6J1EWU93.2e-6699.26Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111437256 PE=3 SV=1[more]
A0A6J1CX537.2e-6698.53Histone H2A OS=Momordica charantia OX=3673 GN=LOC111015234 PE=3 SV=1[more]
BLAST of Lsi05G009690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145372.16.7e-6699.26histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 histone H2A variant 1 [C... [more]
XP_022145883.11.5e-6598.53histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant ... [more]
XP_022963902.11.5e-6598.53histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A varian... [more]
XP_023511677.13.3e-6598.53histone H2A variant 1-like [Cucurbita pepo subsp. pepo][more]
KAF3961702.11.1e-6395.59hypothetical protein CMV_013715 [Castanea mollissima][more]
BLAST of Lsi05G009690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G54560.12.1e-6593.38histone H2A 11 [more]
AT2G38810.12.0e-6088.24histone H2A 8 [more]
AT2G38810.32.0e-6088.24histone H2A 8 [more]
AT2G38810.22.0e-6088.24histone H2A 8 [more]
AT1G52740.17.9e-5782.35histone H2A protein 9 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 113..131
score: 51.98
coord: 57..72
score: 69.94
coord: 86..100
score: 65.78
coord: 72..85
score: 84.63
coord: 27..49
score: 68.12
IPR002119Histone H2ASMARTSM00414h2a4coord: 16..136
e-value: 7.9E-69
score: 244.6
IPR002119Histone H2ACDDcd00074H2Acoord: 28..132
e-value: 3.40876E-56
score: 169.053
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 13..105
e-value: 8.3E-21
score: 74.7
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 106..135
e-value: 1.1E-10
score: 41.0
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 16..136
e-value: 5.1E-56
score: 189.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 12..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..134
NoneNo IPR availablePANTHERPTHR23430:SF237HISTONE H2A VARIANT 1coord: 2..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009690.1Lsi05G009690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity