Lsi05G009690 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTCTTCGCTTCTACGATCTTCAGGTTTCTTCTCTCTCATTTCTAACTTTTAATTTTCTTTCCATCTCTCTAGATTTCGATTCCGATTCTTTCAATTTCCTTGTTCCCCGATCCAGATCTGTATACAAATCGTTCATTACTTCCCCGTTGTTGATTCTCTTTTAATCAGCGATTATTCGCGAATTCACTCTGTTCAAACATTTTTTGCAGGTTGAATAATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGGTACTCTTTTGAATTCTTACCCGACGAATGAAACTTTAAAATCGTTAGTGTCTTTTCCGTGGGATGTTTGACTTTTTTTCTCCCAATCTTACAATTTCGAACGATTTTTATATTTTATTTAATTTAAATAAGGTTTATGGTAACAAGGTTAGTCAATTATGTTGATGTATCTGCATATTGTTGTGTTTGTTCCTTAGACTTCTTTTGTAATAACATTTTTTGTTGACAGCTATGAATTTTTACACATTGGACTCTGAAATTATTATACAATTCTTTGTTTAGGGGAAAAGTGTGAAGTAGTATTTTTGTGGGTTGGACTTCAAATTTGCAATTCAGATGCCCATGTATTAAAGCTACATGTAGTTGATATTTGTACGGTTATGTTGATGTATCTACATATTGTGATCTGTGTTCCTTAAATTTTTACTGTTCCTTAAATTCGTTTGTGGGTTGGGCTGAAAATTCAGAATTCTAATGCCTATGTCCTTCTTGAGCAACATTTAGTTAACATTACTACAATTATGTTGATGTATCTGCACATTGTGATCGTTGTTCCTTAAATTTTGACTACAATACATTGACAGTTTTGAATTTAAACTTGAGACTCTGAAAGCTCTTTAAATTCTTTGTTTATGGGGGTAAGTGTAAGGTAGGTTTTTGACGGTTGGGCTGTAAATTCGCAATTCCAATGCCCGTGTTCTTTTTTAAGCTACATGTAGTTAAGATTAGTACAATTATGTAATATCATATTTTCTTAATAGCTTTGGATTTTTACATGGGGATCTGAAATGTAATCTTTTTTATTTATTTGTTCAAGGTGAAAGTGTAATTAAGCTAATTTGTTTGTGAGTTGGGCTGATATTTGATAATTTGCAATTCAAATGCTCATGTAGTTTTTTTTTCAAAACTACCAGTGGGTTGAGTTCAAATAGTTCCTCTTCATTTAGCCTTGAATTTCCCCATTATTGGGTCACTTAACTTATGTAGTCTCGGGATTGTGGGGTTTTAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACGTTCACTTGTATCTTTAAGTAATCTTTAGCTTAATCTAGACTGTAGATGAAGACATTTAATTGGCATCCAAGAATTAGCTTCCCTGCTTGCTTTTGTGAAGCTTTGTTACTTCCTCTCCCCCATCTCTTTTGTCTATTTGGTTGGACAAGTATACTTGTTCAGTGTAAGATTGTTATCTTGTTGTATGGTTTTTAATTTAGATTACTTTCTACAAGTTTGTTTGGATGGTTCATTGGGATTCTGGATATTGTCCTTTCTCTTTTGATAAATATCTGGTTATTGTCTTAGTTTTATACATATAAACTATCATGGATGTGCAA CTTCTCTTCGCTTCTACGATCTTCAGGTTTCTTCTCTCTCATTTCTAACTTTTAATTTTCTTTCCATCTCTCTAGATTTCGATTCCGATTCTTTCAATTTCCTTGTTCCCCGATCCAGATCTGTTGAATAATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACGTTCACTTGTATCTTTAAGTAATCTTTAGCTTAATCTAGACTGTAGATGAAGACATTTAATTGGCATCCAAGAATTAGCTTCCCTGCTTGCTTTTGTGAAGCTTTGTTACTTCCTCTCCCCCATCTCTTTTGTCTATTTGGTTGGACAAGTATACTTGTTCAGTGTAAGATTGTTATCTTGTTGTATGGTTTTTAATTTAGATTACTTTCTACAAGTTTGTTTGGATGGTTCATTGGGATTCTGGATATTGTCCTTTCTCTTTTGATAAATATCTGGTTATTGTCTTAGTTTTATACATATAAACTATCATGGATGTGCAA ATGGCGGGAAAAGGGGGGAAGGGGCTTGTGGCTGCAAAGACACCCGCAGCAAACAAAGATAAGGATAAGGACAAGAAGAAACCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCTGTAGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTTGCATCAATTCTGGAGTATCTCACCGCCGAAGTGCTTGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTTGCCATTAGAGGAGATGAAGAACTTGATACCCTGATCAAAGGAACTATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA MAGKGGKGLVAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD Homology
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 2.9e-64 Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 2.8e-59 Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 4.8e-59 Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 6.3e-59 Identity = 122/138 (88.41%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 2.4e-58 Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1K687 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111491533 PE=3 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A1S3BLU8 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103491260 PE=3 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A0A0LLQ9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G225360 PE=3 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1EWU9 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111437256 PE=3 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. ExPASy TrEMBL
Match: A0A6J1CX53 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111015234 PE=3 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_004145372.1 (histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 histone H2A variant 1 [Cucumis sativus] >XP_008449356.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_008449358.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_022930908.1 histone H2A variant 1 [Cucurbita moschata] >XP_022967517.1 histone H2A variant 1 [Cucurbita maxima] >XP_022996250.1 histone H2A variant 1 [Cucurbita maxima] >XP_023532530.1 histone H2A variant 1 [Cucurbita pepo subsp. pepo] >XP_031737443.1 histone H2A variant 1 [Cucumis sativus] >XP_038887488.1 histone H2A variant 1 [Benincasa hispida] >XP_038887489.1 histone H2A variant 1 [Benincasa hispida] >KGN61697.1 hypothetical protein Csa_006318 [Cucumis sativus]) HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66 Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_022145883.1 (histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant 1 [Momordica charantia]) HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_022963902.1 (histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011211.1 Histone H2A variant 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Lsi05G009690 vs. NCBI nr
Match: XP_023511677.1 (histone H2A variant 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65 Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0
BLAST of Lsi05G009690 vs. NCBI nr
Match: KAF3961702.1 (hypothetical protein CMV_013715 [Castanea mollissima]) HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63 Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 ) HSP 1 Score: 245.7 bits (626), Expect = 2.1e-65 Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 ) HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60 Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 ) HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60 Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 ) HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60 Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0
BLAST of Lsi05G009690 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 ) HSP 1 Score: 217.2 bits (552), Expect = 7.9e-57 Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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