Lsi05G009110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 16291585 .. 16292031 (+)
RNA-Seq ExpressionLsi05G009110
SyntenyLsi05G009110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAACTCCAAATCTTCCAAGCGCAATCCTTTTTGCGAGAAGCTTCTCAAGGCCTTTGGCGTTTATCCTAAAATCATCAAATTCAGTCCTTCCCCAAGCCGGCAAGAAGAACAACCCAACTATCCTCAGCAAATTCATATTCATGATCAAGCTAATGCCCCACCTGAAATAATGGACAAAAAAGTACAAAACTCGTCCAACAACAAATTGGGGAATAAATCAGGAGACCAAGATGTTAACGATGTGTTTAGCGATTACATAAATCGGGCTAAACGCAGGCTGGGAAGCATATCAAGCAAGCGATCACATGATTCGAGTAGCAAAGGAAAAGAGAACCTCAAAGATGATCGTCGTTTTTCAGATTATATTATTCGTGCTAGGAATAAGCTGAAGGCTACCTCCTCAAGTGTGGGATTCACTATAAGTAGCTCCAGAAAGTGA

mRNA sequence

ATGGGAAGAAACTCCAAATCTTCCAAGCGCAATCCTTTTTGCGAGAAGCTTCTCAAGGCCTTTGGCGTTTATCCTAAAATCATCAAATTCAGTCCTTCCCCAAGCCGGCAAGAAGAACAACCCAACTATCCTCAGCAAATTCATATTCATGATCAAGCTAATGCCCCACCTGAAATAATGGACAAAAAAGTACAAAACTCGTCCAACAACAAATTGGGGAATAAATCAGGAGACCAAGATGTTAACGATGTGTTTAGCGATTACATAAATCGGGCTAAACGCAGGCTGGGAAGCATATCAAGCAAGCGATCACATGATTCGAGTAGCAAAGGAAAAGAGAACCTCAAAGATGATCGTCGTTTTTCAGATTATATTATTCGTGCTAGGAATAAGCTGAAGGCTACCTCCTCAAGTGTGGGATTCACTATAAGTAGCTCCAGAAAGTGA

Coding sequence (CDS)

ATGGGAAGAAACTCCAAATCTTCCAAGCGCAATCCTTTTTGCGAGAAGCTTCTCAAGGCCTTTGGCGTTTATCCTAAAATCATCAAATTCAGTCCTTCCCCAAGCCGGCAAGAAGAACAACCCAACTATCCTCAGCAAATTCATATTCATGATCAAGCTAATGCCCCACCTGAAATAATGGACAAAAAAGTACAAAACTCGTCCAACAACAAATTGGGGAATAAATCAGGAGACCAAGATGTTAACGATGTGTTTAGCGATTACATAAATCGGGCTAAACGCAGGCTGGGAAGCATATCAAGCAAGCGATCACATGATTCGAGTAGCAAAGGAAAAGAGAACCTCAAAGATGATCGTCGTTTTTCAGATTATATTATTCGTGCTAGGAATAAGCTGAAGGCTACCTCCTCAAGTGTGGGATTCACTATAAGTAGCTCCAGAAAGTGA

Protein sequence

MGRNSKSSKRNPFCEKLLKAFGVYPKIIKFSPSPSRQEEQPNYPQQIHIHDQANAPPEIMDKKVQNSSNNKLGNKSGDQDVNDVFSDYINRAKRRLGSISSKRSHDSSSKGKENLKDDRRFSDYIIRARNKLKATSSSVGFTISSSRK
Homology
BLAST of Lsi05G009110 vs. ExPASy TrEMBL
Match: A0A5D3CQZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00660 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.5e-29
Identity = 95/158 (60.13%), Postives = 114/158 (72.15%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PFCEKLLKAFGV--YPKIIKFSPSPSRQE----EQPNYPQQIHIHDQA 60
           MGRN KSS  N PFCEKLLKAFG+   PKI K SPS S  E    +Q N  Q I++H + 
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHEQQHQQQNNSSQHIYVHHE- 60

Query: 61  NAPPEIMDKKVQNSSNNKLGNKSGDQD-VNDVFSDYINRAKRRLGSISSKR--SHDSSSK 120
              P IM+ K  +S +NK G   GD+D VNDVFS+YINRAKRRLG+I+SK+  ++DSS K
Sbjct: 61  ---PAIMEIKTHSSKSNKYG--GGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGK 120

Query: 121 GKEN-LK-DDRRFSDYIIRARNKLKATSSSVGFTISSS 147
           GKEN LK +DRRFSDYI RAR+KL+ATSSSVG T + S
Sbjct: 121 GKENSLKAEDRRFSDYIARARDKLRATSSSVGLTKTKS 152

BLAST of Lsi05G009110 vs. ExPASy TrEMBL
Match: A0A0A0KG94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 89/158 (56.33%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PFCEKLLKAFGV--YPKIIKFSPSPSRQE-----EQPNYPQQIHIHDQ 60
           MG+NSKSS  N PFCEKLLKAFG+   PKI K S S S  E     +Q N  Q I++H +
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  ANAPPEIMDKKVQNSSNNKLGNKSGDQD-VNDVFSDYINRAKRRLGSISSKR-SHDSSSK 120
               P +M+ K  +S NNK     GD+D VN  FS+YINRAKRRL +++SK+ S+DSSS+
Sbjct: 61  ----PAVME-KTHSSKNNKYA--GGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSR 120

Query: 121 GKE-NLK-DDRRFSDYIIRARNKLKATSSSVGFTISSS 147
           GKE NLK +DRRFSDYI+RARNKL++TSSSVG   + S
Sbjct: 121 GKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKS 151

BLAST of Lsi05G009110 vs. ExPASy TrEMBL
Match: A0A6P5RSE8 (uncharacterized protein LOC110748293 OS=Prunus avium OX=42229 GN=LOC110748293 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 0

Query: 23  VYPKIIKFSPSPSRQEEQPNYPQQ---------IHIHDQANAPPEIMDKKVQNSSNNKLG 82
           V P    +S +  +++++P + +          +H H+ A    E    +V+N      G
Sbjct: 152 VQPHKATYSKAEEQEKQKPKHSESPLKGAVGEALHNHNAAVKVHEAEAPRVKNE-----G 211

Query: 83  NKSGDQDVNDVFSDYINRAKRRLGSISSKR--SHDSSSKGKENLKDDRRFSDYIIRARNK 142
            K G  D+ND FS+YIN+AK ++ ++SS +    D  +K KE++KD   FSDYI RA+NK
Sbjct: 212 KKPGGLDINDTFSEYINQAKIKIRTMSSNKISDDDDDAKKKESVKD--HFSDYIHRAKNK 271

Query: 143 LKATSSSVGFTISSSRK 149
            K+T S++G   S+S K
Sbjct: 272 FKSTPSNLGAGKSASFK 281

BLAST of Lsi05G009110 vs. ExPASy TrEMBL
Match: A0A314Z5U6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08807 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 0

Query: 24  YPKIIKFSPSPSRQEEQPNYPQQIHIHDQANAPPEIMDKKVQNSSNNKL----------- 83
           YPK  +    P   E QP+        +Q    P+  D  ++ +    L           
Sbjct: 137 YPKAEEEKQKPKNSEAQPHKATYSKAEEQEKQKPKHSDSPLKGAVGEALDIHNAAVKAPQ 196

Query: 84  ----GNKSGDQDVNDVFSDYINRAKRRLGSISSKR--SHDSSSKGKENLKDDRRFSDYII 143
               G K G  D+ND FS+YIN+AK ++ ++SS      D  +K KE++KD   FSDYI 
Sbjct: 197 VKNEGKKPGGLDINDTFSEYINQAKLKIRTMSSNNISESDDDAKKKESVKD--HFSDYIH 256

Query: 144 RARNKLKATSSSVGFTISSSRK 149
           RA+NK K+T S++G   ++S K
Sbjct: 257 RAKNKFKSTPSNLGAGKNASFK 276

BLAST of Lsi05G009110 vs. ExPASy TrEMBL
Match: A0A5E4EGF6 (PREDICTED: PHAVU_001G147900g OS=Prunus dulcis OX=3755 GN=ALMOND_2B019859 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 0

Query: 15  EKLLKAFGVYPKIIKFSPSPSRQEEQPNYPQQ---------IHIHDQANAPPEIMDKKVQ 74
           E+  K     P    +S +  +++++P + +          ++ HD A    E    +V+
Sbjct: 135 EEKQKPSEAQPNKATYSKAEEQEKQKPKHSESPLKGAVGEALYNHDAAVKVHEAEAPQVK 194

Query: 75  NSSNNKLGNKSGDQDVNDVFSDYINRAKRRLGSISSKR--SHDSSSKGKENLKDDRRFSD 134
           N      G K G  D+ND FS+YIN+AK ++ ++SS      D  +K KE++KD   FSD
Sbjct: 195 NE-----GKKPGGLDINDTFSEYINQAKIKIRTMSSNNISESDDDAKKKESVKD--HFSD 254

Query: 135 YIIRARNKLKATSSSVGFTISSSRK 149
           YI RA+NK K+T S++G   S+S K
Sbjct: 255 YIHRAKNKFKSTPSNLGAGKSASFK 272

BLAST of Lsi05G009110 vs. NCBI nr
Match: KAG6606435.1 (hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 88/139 (63.31%), Postives = 103/139 (74.10%), Query Frame = 0

Query: 1   MGRNSKSSKRNPFCEKLLKAFGVYPKIIKFSPSPSRQEEQPNYPQQIHIHDQANAPPEIM 60
           MGRNSKSSKRNP CEKLLKA G+YP+I+KF P P+RQEE P      H +       +I 
Sbjct: 1   MGRNSKSSKRNPVCEKLLKALGLYPRILKFGPPPNRQEE-PKPAALAHSYSL-----QIQ 60

Query: 61  DKKVQNSSNNKLGNKSGDQDVNDVFSDYINRAKRRLGSISSKRSHDSSSKGKENLKDDRR 120
           D +V+         +   +DVNDVFSDYI+RAKRRLGSISSKR HD SS+GKEN+K+D R
Sbjct: 61  DDEVEK-------EQKPSEDVNDVFSDYISRAKRRLGSISSKR-HDWSSRGKENVKEDNR 120

Query: 121 FSDYIIRARNKLKATSSSV 140
           FSDYI+RARNKLKATSSSV
Sbjct: 121 FSDYIVRARNKLKATSSSV 125

BLAST of Lsi05G009110 vs. NCBI nr
Match: KAA0057288.1 (hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK13444.1 hypothetical protein E5676_scaffold496G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 9.3e-29
Identity = 95/158 (60.13%), Postives = 114/158 (72.15%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PFCEKLLKAFGV--YPKIIKFSPSPSRQE----EQPNYPQQIHIHDQA 60
           MGRN KSS  N PFCEKLLKAFG+   PKI K SPS S  E    +Q N  Q I++H + 
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHEQQHQQQNNSSQHIYVHHE- 60

Query: 61  NAPPEIMDKKVQNSSNNKLGNKSGDQD-VNDVFSDYINRAKRRLGSISSKR--SHDSSSK 120
              P IM+ K  +S +NK G   GD+D VNDVFS+YINRAKRRLG+I+SK+  ++DSS K
Sbjct: 61  ---PAIMEIKTHSSKSNKYG--GGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGK 120

Query: 121 GKEN-LK-DDRRFSDYIIRARNKLKATSSSVGFTISSS 147
           GKEN LK +DRRFSDYI RAR+KL+ATSSSVG T + S
Sbjct: 121 GKENSLKAEDRRFSDYIARARDKLRATSSSVGLTKTKS 152

BLAST of Lsi05G009110 vs. NCBI nr
Match: KGN47879.1 (hypothetical protein Csa_004306 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-24
Identity = 89/158 (56.33%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PFCEKLLKAFGV--YPKIIKFSPSPSRQE-----EQPNYPQQIHIHDQ 60
           MG+NSKSS  N PFCEKLLKAFG+   PKI K S S S  E     +Q N  Q I++H +
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  ANAPPEIMDKKVQNSSNNKLGNKSGDQD-VNDVFSDYINRAKRRLGSISSKR-SHDSSSK 120
               P +M+ K  +S NNK     GD+D VN  FS+YINRAKRRL +++SK+ S+DSSS+
Sbjct: 61  ----PAVME-KTHSSKNNKYA--GGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSR 120

Query: 121 GKE-NLK-DDRRFSDYIIRARNKLKATSSSVGFTISSS 147
           GKE NLK +DRRFSDYI+RARNKL++TSSSVG   + S
Sbjct: 121 GKENNLKAEDRRFSDYIVRARNKLRSTSSSVGLAKTKS 151

BLAST of Lsi05G009110 vs. NCBI nr
Match: KAG6571440.1 (hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 76/140 (54.29%), Postives = 91/140 (65.00%), Query Frame = 0

Query: 1   MGRNSKSSKRNPFCEKLLKAFGVYPKIIKFSPSPSRQEEQPNYPQQIHIHDQANAPPEIM 60
           MG+N+KSSKR+  CE+ LKA G+        PSP+R EE                 PE+ 
Sbjct: 1   MGKNTKSSKRSSVCERFLKALGM-------CPSPTRHEEP--------------LAPEMD 60

Query: 61  DKKVQNSSNNKLGNKSGDQDVNDVFSDYINRAKRRLGSISSKRSHDSSSKGKENLKDDRR 120
            K+  N +      K    + ND FSDYINRAKRRLGSISSKR HD SSKGKENLK+DRR
Sbjct: 61  KKQRLNINGAPQMEKKQKLEPNDAFSDYINRAKRRLGSISSKR-HDPSSKGKENLKEDRR 118

Query: 121 FSDYIIRARNKLKATSSSVG 141
           F+DYIIRARN+L+ATSS+VG
Sbjct: 121 FTDYIIRARNRLRATSSTVG 118

BLAST of Lsi05G009110 vs. NCBI nr
Match: XP_021803981.1 (uncharacterized protein LOC110748293 [Prunus avium])

HSP 1 Score: 61.2 bits (147), Expect = 8.5e-06
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 0

Query: 23  VYPKIIKFSPSPSRQEEQPNYPQQ---------IHIHDQANAPPEIMDKKVQNSSNNKLG 82
           V P    +S +  +++++P + +          +H H+ A    E    +V+N      G
Sbjct: 152 VQPHKATYSKAEEQEKQKPKHSESPLKGAVGEALHNHNAAVKVHEAEAPRVKNE-----G 211

Query: 83  NKSGDQDVNDVFSDYINRAKRRLGSISSKR--SHDSSSKGKENLKDDRRFSDYIIRARNK 142
            K G  D+ND FS+YIN+AK ++ ++SS +    D  +K KE++KD   FSDYI RA+NK
Sbjct: 212 KKPGGLDINDTFSEYINQAKIKIRTMSSNKISDDDDDAKKKESVKD--HFSDYIHRAKNK 271

Query: 143 LKATSSSVGFTISSSRK 149
            K+T S++G   S+S K
Sbjct: 272 FKSTPSNLGAGKSASFK 281

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQZ74.5e-2960.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KG941.5e-2456.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1[more]
A0A6P5RSE84.1e-0634.31uncharacterized protein LOC110748293 OS=Prunus avium OX=42229 GN=LOC110748293 PE... [more]
A0A314Z5U69.2e-0633.10Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_088... [more]
A0A5E4EGF61.6e-0533.10PREDICTED: PHAVU_001G147900g OS=Prunus dulcis OX=3755 GN=ALMOND_2B019859 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAG6606435.11.8e-3263.31hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0057288.19.3e-2960.13hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK134... [more]
KGN47879.13.1e-2456.33hypothetical protein Csa_004306 [Cucumis sativus][more]
KAG6571440.11.2e-2354.29hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021803981.18.5e-0634.31uncharacterized protein LOC110748293 [Prunus avium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..83
NoneNo IPR availablePANTHERPTHR36746BNAC04G51760D PROTEINcoord: 28..147
NoneNo IPR availablePANTHERPTHR36746:SF3BNAC04G51760D PROTEINcoord: 28..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009110.1Lsi05G009110.1mRNA