Lsi04G024330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G024330
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Locationchr04: 31387743 .. 31397272 (+)
RNA-Seq ExpressionLsi04G024330
SyntenyLsi04G024330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCAGGGGATCGTCACCTTTGTAATCGTCGATAGCCTCAATCAATTTCCTGAAAGAATAATGAAGAACAGATAAAGAAAAGGCCACGAGTACCATGGGCGTTAGAGGAGGGATAGAAAGCTAAAAACCTTCGATTCTCAAGGAGGGATTTCTTGATATGGTTATCGGTATGGGATTTGAGGGCATTGTTCAAGATGCTGATATTGCGACCCCTCTTCAGAGGTCTGACGTTCTCTTTCAAGAGCTCCCAGTCGTTCTGAGTCTTACGCTTGGAGAAAAGGAACTCAGTTTCTGGGTCCAATTCCTGTATCTTTGCGTCTTCCATGGCTGTTGCTTTTCCTCTACCTCCTCACTGCTAACCGATGGCCAACCACCTGGTCTGACTCTGAGATCCTGCAACGCTCCAAGAATTTCAAATTTCAAATTTCAAAATTCGAATCTCCAACAGCCGACACTCCCCTTTGTTTAAATCAAAGTAAGTAAATGGGCTGAGTGGGTTGGGCCTAAGACTAGAATTGATGAAGATTTAGATATTTAGATTTTAAATTCATTTTTCAAAACTTATTTTCATTTTATGGAATTTTTGGTCGAAAATATCCTTTTCCGTGGCCGGATGATTGATATTTTACTTATTTACTAACAACTGAACTCTAAAGTTCAGCCAAAATTTGACATCCAATATCTGAAGAATAAATAATTAATGAACACTGAGACTAATCAGTAAAAACAACGACGACTGTCAATGATTCAGCAGAAGTCTATACTCTTAAGTTATTAACAAACTTCTTGTTGTACTATGCCATAATGCTAATCTTCAATCACGGTTAGAAACTATTACTTGCATTTTCATCTCAATAACATTTTGAAAAACAAAGATGAGTATAAAAATACTCAATAAGAAACTTCCACATCAAATTCATAATACATTTAAAAACAAATAAAATGTATCGAACCATAGAAGTTCAATCAGCAAAACATTTGTTTTTCTTTTATATCTATTAATGGACAAAAGTTAAACTTTTAAATAAATAGTTTTTCAATCAAAGTCTTTCAATACTTAGATAGTCTTTCAACAAAACCAAAACGATGGACCAAACTATTAGCACCTTTAAAAACAAAACATTCATGCTTTTAAAACACAATTTTTTCAATACTTTCAAGTGCAGAGCTTCCAATCGGTCAATACTTTCAATCAAACAAAACTTTCAATCAGTCAGTACTTTCTAAACAAAACTTTCAAATATAGAATATAAAAGATATATAATTGATGTACTCCAGCAGATATGGTTACCCATTGGCAACACTAGCAAAAATATCAATTAACTATCAATAAGAACATAAAAAACCTTGGTTAGCAACCAACAAAAATAGAGACTACTTAAGTGCGAGGCCATGTGAGTGCAACACACACGTGAATCTTCATTCCAAAGAAGGTCAAACCACAAATCACGCCTTCTCACAAATAAGCTTAAGTCAAAACAGAAATCGTCAATTCCAAATTTGGAAACAACAAAATACCATTCAATCCCTAAACACAAAAATTGGCATATTCGAATAGCCCCAATCAAAATAAAAACATTTGAAACACAATATGTAGTTTCAAACAGTAAATTCAACATAAAAAATCATCAAATCAAATCATTTGAATCTTCCAAAAACTTTCAAAAGTAACCAAAACCAAAACAGAAACACTTTCAATTCAAAATCAATCAAAACACTTCCAACTATCATTCAAAACGGAATTATGGCCACTGTTTTATCAATAAAAATGGTATAGAAAAACTAAAGTTGAGTTTGGGAGTTGTATGAGAAAGGTATTAGCACCCCACAATACCCCTTTTGAATTGAAAATTATTCTTTAATGAAAATAATTTGGGAATAAATAACTATTTCTTTTTAATAAATGGAACAAATTTTCATCAATTAGCCTATGCTATAATTAAAGAAAAAGAAAATATTACAATTTCTCAAAACCATAATAGGAATAGTCTTTTAATAAATTTTTTTTTAAAAAACATTAATTAAATTCATTTTTTTTGGAATCAAAATATCGGACTACCAAACATATGATCCCTAACCTCAATAATCTAGAAAAACGGAATTTCATCTAATTTTGTTTAGGATAACAGTCTTAAAAACGAGTTATTAGAAGAAAAAAAAAATGATTAGGAAACCTTATGAAATCTCCTCCCTCCAAAGACTAAAACCAACTATAATAAAAAAAGAAAAGAGTAGATTATGAGATTATTTTTCTAAAATTTTAATACGAAAAATCCTTAAATAAAAGATTTTTTCTATTAAAAAAAAAACTTTTTTTCCCCTCATTCTATATATATATTACCTTAATCATTAACAATAAATTTTTTTTTAATTATTTTTAAATATTAATTATTAAAAATCATTTATTTATTATTTTCTTAGTATTAAATCAAAATTAGCCTACATGTGACTACAAAATTAGTATTAAAAGGGAAATGAAATTGAAGATTATGAGATTATTTTTCTCAAATTTTAATACGAAAAATCCATAAATTAAAGATTTATCTATAAAACTTTTTTTCCCCTCATTCTATATATATATATATATATTACCTTAATCATTAACAATAAATTTTTTTTTAATTATTTTTAAATATTAATTATTAAAAATCATTTATTTATTATTTTCTTAGTATTAAATCAAAATTAGCCTACATGTGACTACAAAATTAGTATTAAAAGGGAAATGAAATTGAAGATTATGAGATTATTTTTCTCAAATTTTAATACGAAAAATCCATAAATTAAAGATTTATCTATAAAACTTTTTTTCCCCTCATTCTATATATATATATATATATTACCTTAATCATTAACAATAAATTTTTTTTTAATTATTTTTAAATATTAATTATTAAAAATCATTTATTTATTATTTTCTTAGTATTAAATCAAAATTAGCCTACATGTGACTACAAAATTAGTATTAAAAGGGAAATGAAATTGAAGATTATGAGATTATTTTTCTCAAATTTTAATACGAAAAATCCATAAATTAAAGATTTATCTATAAAACTTTTTTTCCCCTCATTCTATATATATATATATATATTACCTTAATCATTAAAAGAAATAACTTTTTATTATTATTACTTTTTAAAGATTAATTATTAAAAATTATTTTTTAAATTTTTTTTAGGTGAAAAATAAAATAAAAATGGTGTGTTTTTTTTGGCAATGGGTGTCTGATGCGTTTTCGCTCAGTGATCACTCCCATTATCAGAGATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGGCTCCTTCCACGGAAATTCTCTTCTGCAACTCCGTTCGCGGACCACAACTCTTAATTTTCGAAACAGCCACTCTATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAAGAGGTTCGTAAGAAAACAAGCTAGCTGTGTCCAACTTTTAGCTGATTTCTGAGTCCTTGTTTTCATCTTGCTTTAGCTTGCAGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGGTAATCGGGTAAGCTTATTTATTGGTGCCCAAATCCTTCTATCTTAATTATTATCGCCCTGTTCACCGAATTATTAAACCTGCTACATTTTCCGTTAAACTGGTCGGTCGTTTACACCGTTGAAAATTGGTCTGACAACGCATGCGTGATTTGGTGACGCCAATGCCAAGTTAGACTACTCAGATTTTTAGAATAATTACATACACGTTGAATTAATATCTGTCTAGAACATATAGGACTTCAAGTTGTATGGTATTATTAATCATATTCAAAGTGAGTAGATCGTGACCAAGACAATGATTGTTAAAAAAGATCATAGAAACCAAACAGTCCCTGGTTAAACAACTTATTGGAATCATTTTGAATTCGCTCCAGGTATGCACAGACTATCCTTAAGCTCAAAGTCCATTAAAATGCACAAACTGGAGGCTGTTCTAGGCAACGCAATGGAGACATTATCAACTGGTTTAATTGTCATGGAAACTTGATCTGTTGGAACAATATGACTAGTAGCCGCAGAGGCAATTATCCAGTATTTGTTTGAATTAGGCAATGAATTTGTAGCACATAATAACAAGTACCTGAAACATGAACTTGGGCACTTGAACCCTTGCTGCACCATTCTTTACCAACTAGCTGACAATTAAACTTAGCGATTCATTGCTGGTAATGTGCTTGCCTTAAGAGTCTGGATGCTGTTCCCATAATTGCTTTGGTCTGAAGGTACGTACTCTATCACAGCCTCCTCAATCCCCACCCCATCCTGCCCAGGCCTCCACCATCGCCTTCAGATCTGCTCCTATTTGCACCATTCTCTCCATTCATCTTTCTCACTCTCCTCCAATCCTTATGCTAAATTTGTGGTTAACTGCTGCCACCACTGGACTCCGTTATGCCACATGAGAGGGATCTGATTCATCTAAAAGGGTTTCTTACAAATTTTCTATAAATATAAGGATAGTAAAGGCTTTCTTCACTATGTTATTCTTGATGTCCTTCTTCTGGACTTTTGCAGAGGAAGGAAAGTTTAATCTTCATAAGGGCTCTTGATTTAGATGATAATTTTGCAAACAAGCACTCGTTTGTAAAGTGTTGTTGGTTGATACTATTCCACTACTTGATTATTTCTTACATGCCGAACGCTTACATGAAATAAAAACTTCATATATAGGATGATGGTGTTAAGGATGAAAGGCTTTTAACTGTATGAGTTAACAAATAACAATAACATTCTATTTAGGATTTAACAACCTATGAGTTTCCTTGACACCCGATTGTTGTAGGGTCAGGCGAGTTGTCCTGTGAAATTAGTCTAGGTGTGCAGGACACACATGGATAGAAGAAAAAAGGATGGAACGCTATATACCATGTATGTTGTGCTACAGAGGATACTGAGTGGTTAAGAAAGAATGGGAAGTAAACTTTCATTTAAAATCATATTCTGAAGTAAAATATTGCTTCTGACAAAAGGATTAGAGTATAAAAAACTCGATTCGCTGCATTGGTTGCAGATTTGTCCAACCAGTATAGTTGTATAAGGCACAATGAGTGTGAATCGCTCTCTCCTTTTCTGTTCTTTACCTGCATTTTGAGCATCCCTTCTACTGGATTAATTTCCAACAAGAATGCCATTTGGTAAACTTCACTACCTACACACAGTTTTCTCTACTGTTCCTCTTCAACAAAACACGTATGGTTAATATAAAAAAAAGTACTTGTAGCATAGCAGTGAGATACAAGTACCTACCTCATGATTTCTTTCAATATTTTCAATGGGTTTTTAGGGTTGAGTTAAATTTTAGAGTTGGTCATAATATGATAAATAATGGGTTGGGCAATGAGCATAATCTAAGAAGCACAGACACTTTAGTTTGGCTAGCATTTTCGTGTCCAACACATGTTAGGCACTTGGACACTCTGACACTTGTTGGACATGTATCAGACACTTATTTAGTGCAACAAATGTGTTAGACATGTATAGGACACTTGTTGAGTAGACTAAAAAGACAAATCTATGACAAAATAATAAAGTTTGAGTGTGAAATACATATAACTAAGTTTTTTGAGCACATAAATGCATCAACCCATTTACTTTTGAATTTTCTTTTGGTATAAAAATGCTATATATTTTTTAAAATGTATATTTTAATAAACGTGTCCTTGCTGTTTCGTGCCCTAGATTTTTAAAAAATGATGTATCGCCGTGTTCGTGTTGTGTCGTATCCGCATCTCTTATCTATATTCGTTCTTCTTAGAGCATAATATTAAGCACCAAATGGGGTTAAGTGTTTATTTTTTAAAAAGGTTTTATAAAATCTTTTTGGTCAACATGTCTTTGTGTCTTGTATGTGTCCCATGTGTATTCTCAATGCGGTTTGAAATTTAAAAATAAAAATGAAATAGGATACCTTTTTTTTTTCTCCCTCTCATGCCGAAGATGTTTCCGAGGTGTTTCTGGACATATTTATGTTCGTTAGTGTCTTCATGGGCACGGTATAAAAGAGAGTGTTTGTGCTTCCTAGCAATTGCCCTATTGGTAGAGGTATAAGATCCATTAACAACAATTGATCTTAAATAAGCAATGAAATTGTCTTGACCCAAAAGTCCATAAATACTCCAGCTTGTAAATACCAGTTAATGCCTTTTTGCCTCCACATACACACTTCGCATAAATGTTGCTAGGGCTATAATTTAATTGCTCCTCTCCTCTCAGATAATTTTCAATTCAGCAAATTATGTACTCACCAACATTTGCTTCCATGTAAGAGTCACCAACTCCCTTCATAGCTGAAAACTTTGAAGGGCATTCTTCTTTGAGAATCTCCCATATTTCTTGAGCTGAATACAGGTGGGTAAGACTAGCTCCTGTCTCATTTAATAATGAGAATCTAGGATACTAAAATGATGTTGTTGTGGATGCACACATTTACCAAGGGACCATTTCTTGATGGACATGCAAGATGCTGTCAAAAAATCCAACTAGTATCCAAAGATCTCTTCCGAAAGATTTGAAGCTCCCCTACCCTAGAAAGATTAAGGGTTGTTTGGCCCTTCAACTTCAAGTGGGCGGAGTGAGCTATTATAGCCCACTCCATGTTTGGGGCTCCAACTATAATAGTTGGCGTTTCCAAATATTATAACCTACAATTAATATTACTATTTCAAATTCCTCTTTGTTACCGTGTTAACTATTTCCTACCTAAATTAAAATAATCTGCACCTCAAACACAGATGCCCACAGACTATAATAACCACTGAGTCATTGACTATAATAACCAACTCAGCGCCCCAAACGGCTCCTAAGTTCATGTTTTGGGAAGTTAACCGCTCTTGGATAAGTCTCTCTCCCTCTTGTTGCTGGCTTGGTCAATGAGATTTTGAGACTCAAATTTAGCTCTTCTTCAAATGCTCCTTCCTCGTTTCTGTTGGGGTGATTTGTTTGAAGCTTTTCATTGGTGCACAACCCCCCATCTAGCACGCAGGGTTGGCTAAGGATGTTGTTGATGGGCCACCCATTCAAAGCTACTACAGAACACCTAGGGGTTAACATTATTTATGTGGTTTTGTGGAAGATTTGGGATGATAAAAATGCTAAAACATTTCAAGGGAACCAAATCGTCAGAGAAAATCCTTAAATCAGCTGATATCAATGCATTCTTTTGGTGTAAAAACTTACATGCTATTAAAAGTCATAGTTTTTCTTTCCTTGTTGCAAATTGGAAACATATTTTGTATATCCTATGAATAGGCTATCATTTTATACATCTTTGGACATTTCATTCAATCAATGAAATAGTTATTATCCAGTAAAAGAGGGAAAAGAAAGATCCAACTGCGTTCTTCATGGAAATTGGAAAGTGCTATCTTTGTGGCTAGACTCCAGGAAATGAAGTTTCTCCAGTTAGTTGGCTGGGAAACAAGCACCAAACTTAGATTGTCAGAATGGTGGATGTGAAAAGGATTGTTGGCGGCGTCATCCACCATATAGTTTTTTGCAATTGAGTAGGGTTTAATTGTAATTGGACAAGATTTTTTTTTAATATCCTTAGAATTCTAGGAGTAAATATCTGGAGACTCATATCTCTTCAAGTTGGAACTACTATGGTGAGAACATGCAGTAGACAAGCACTATTCTGACACCACATTCGGGTGAAGGAAGTTTTGTAAACTAACTTTCTATTATTATGATGAAAGCCATACAACAAATATGGATATCACCAAATGTCTAGCCAACTCATAACAGAACGAGGAACCTATCTTAGACTAGGTAAAACAGACAACATTTAGTTAATAAAAGTAAAAATGTTTGTTATTTCTTTTTAATATTTGTGAATGTCTAGATTAGCTTGCACGCATTTGGACTAATCTCATGGGATAACCATCTGGCTCTACTATATTTGGTTGCCAAGGAAGCTTGTAGGATATTTAAATTCTATAGGTGGCCATCATGACTTGAACTCAATTTTTTAAAATTCTTTTTTATTTATATGGGCTTCGGTAGAATGTTTGTGTTAGGTATCCACTCCCCTTGCAAGTAGAAAAACTCAACAAGCCAAGAGAGACAAGGAAGATAGAGAAAAACAGAGCAAGTCTACTCTGTGATGATTATTTATATACTTTCCAATATACCTCGAAAGTTCTCAATCACCAAAATAAGAAATAAGGACAATACTCAAAAAATGGTACACTGATCAATATGGAAATGAAAGAAACACCCCCAGCTCATTCGAGAGTGTTGGTCTCTTCTCCTTTCCCGATTAGGGCCTGCAACTTCTCCTCAATTTCGATACCCCATTCTCTCTCCCCCATTTTCCTTTTTAAGCTCTCACGGTGGTCCCCCCTTGATCAACTAACTTCACGTGCTTCATTCCTCTCCATTCCATTTCCACGTTATTTCCCTTTTCTACCCCTCCTCTTATATGTGTATATGATTGGGGGTCTAACAGTTTGCTACTATAATTCTTCTAGTTAACTTATCGTGAATATTCCAATTCTAATTTGGATATCTGTTTAATTATTGAAGTTTCATTGTAGAACTGGCCAGTAGTATTTCTTAAATATTTATTTCATTTAATTTCCTTTTATTCTTTAGTATCTTTCTTGTTCTGCAAACTTTCTTCTTTCTTGAAATTGAGTACATGGCCTTTGATCTTTTGCTCGTACTAATTTACATTGTATTGGATGTGGTATTACGAATTATTGCAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAAGTATATTGAGCTTCTTTTAGCCTATTTTCTTTTTTCAGCAATTCCCTTTTTCCCAATATCTGGAACCATATGTAGATGTATTAGTGCATATCATAAGAGAGTATGATTATTTGACTTGTGAATTGGCCGGTAGACAAAGGGATGACATAATGATGATCATCAATGCAGATAAGCTGTGAGAGTAACAAAATGATCCTGCACAATATAATATAGGCATCACCTTAAATGATCCTTGAATAAATATCCACATATTTGTTAGCTATGATACAAAACTTGCATACTGCACAGCTTGCTATCCAACTTTGAAGATATTTGACCTATTCTATATGCAATATAACTTTGCAGTCCTAAATTATCTTCGATGAGCAACTCTTATTGAATGTGTATATATATATATATATATTTTCCCTTTCCTATTTGAAATTTCCATCAATAATTCATTTATTTACTTTATCATATTTCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG

mRNA sequence

ATGGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG

Coding sequence (CDS)

ATGGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG

Protein sequence

MGVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAALKYCMLVGLC
Homology
[Close]
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match: Q9C9K1 (Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB7 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-34
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVL+FSAIPFTAVK+IANS +G SL+R+LE+KKK AV NSS+FK+ A+EAR +S WYG+E
Sbjct: 51  GVLVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKE 110

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRW GP+PYDYP YLTGELPGDYGFDIA L
Sbjct: 111 RPRWFGPIPYDYPPYLTGELPGDYGFDIAGL 141

[Close]
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match: P10049 (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii OX=3350 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 16 SIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPK 75
          S+A   L +  Q +L KK  +A A  +  + +   +  ES WYG +RP++LGP     P 
Sbjct: 11 SLAGQTLLRPQQNELVKKVGTAQARITMRRTV--RSAPESIWYGPDRPKYLGPFSEGTPS 70

Query: 76 YLTGELPGDYGFDIAAL 93
          YLTGE PGDYG+D AA+
Sbjct: 71 YLTGEFPGDYGWDTAAV 85

[Close]
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match: P14278 (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB4 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 54 ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          +S WYGE+RP++LGP     P YLTGE PGDYG+D A L
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84

[Close]
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match: P14279 (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum OX=4081 GN=CAB5 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 54 ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          +S WYGE+RP++LGP     P YLTGE PGDYG+D A L
Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 56

[Close]
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match: P07370 (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB1B PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 45 KALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          KA+A+ A   S WYG +R ++LGP   + P YLTGE PGDYG+D A L
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 84

[Close]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match: A0A5A7VCG1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G004020 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 58  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 117

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 118 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 148

[Close]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match: A0A1S3BVA0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493859 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 94  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 153

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 154 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 184

[Close]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match: A0A1S3BWE1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493859 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 94  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 153

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 154 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 184

[Close]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match: A0A6J1CK83 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012208 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.7e-38
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSAIPFTAVK+IANSPLG+SLQRQ+EKKK++A+ANSSKFKALA EARK+SSWYGEE
Sbjct: 59  GVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWYGEE 118

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGP+PY+YPKYLTG+LPGDYGFDIA L
Sbjct: 119 RPRWLGPIPYEYPKYLTGDLPGDYGFDIAGL 149

[Close]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match: A0A6J1FCV0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442842 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSAIPFTAVK+IANSP G+SLQRQLEKKK +AVA SSKFKALAE+ARK+SSWYGE+
Sbjct: 60  GVLIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEK 119

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPY+YPKYLTGELPGDYGFDIA L
Sbjct: 120 RPRWLGPLPYNYPKYLTGELPGDYGFDIAGL 150

[Close]
BLAST of Lsi04G024330 vs. NCBI nr
Match: XP_008453032.2 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 94  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 153

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 154 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 184

[Close]
BLAST of Lsi04G024330 vs. NCBI nr
Match: KAA0064677.1 (chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 58  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 117

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 118 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 148

[Close]
BLAST of Lsi04G024330 vs. NCBI nr
Match: XP_008453034.2 (PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSA+PFTAVK+IANSPLG+SLQRQLEKKKKSAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 94  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEE 153

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 154 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 184

[Close]
BLAST of Lsi04G024330 vs. NCBI nr
Match: XP_038898449.1 (chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSAIPFTAVK+IANSPLG+SLQRQLEKKKKSA+ANSSKFK LAEEARK+SSWYGEE
Sbjct: 70  GVLIFSAIPFTAVKAIANSPLGESLQRQLEKKKKSAIANSSKFKVLAEEARKDSSWYGEE 129

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 130 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 160

[Close]
BLAST of Lsi04G024330 vs. NCBI nr
Match: XP_004145567.1 (chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVLIFSAIPFTAVK+IANSPLG SLQRQLEKKK SAVANSSKFKALAEEARK+SSWYGEE
Sbjct: 58  GVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEE 117

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRWLGPLPYDYPKYLTGELPGDYGFDIA L
Sbjct: 118 RPRWLGPLPYDYPKYLTGELPGDYGFDIAGL 148

[Close]
BLAST of Lsi04G024330 vs. TAIR 10
Match: AT1G76570.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-36
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 2   GVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEE 61
           GVL+FSAIPFTAVK+IANS +G SL+R+LE+KKK AV NSS+FK+ A+EAR +S WYG+E
Sbjct: 51  GVLVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKE 110

Query: 62  RPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
           RPRW GP+PYDYP YLTGELPGDYGFDIA L
Sbjct: 111 RPRWFGPIPYDYPPYLTGELPGDYGFDIAGL 141

[Close]
BLAST of Lsi04G024330 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-09
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 54 ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84

[Close]
BLAST of Lsi04G024330 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-09
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 54 ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84

[Close]
BLAST of Lsi04G024330 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-09
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 54 ESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          +S WYG +RP++LGP   + P YLTGE PGDYG+D A L
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 85

[Close]
BLAST of Lsi04G024330 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-08
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 55 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAAL 93
          S WYG +R ++LGP   + P YLTGE PGDYG+D A L
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGL 85

The following BLAST results are available for this feature:
BLAST of Lsi04G024330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9K11.1e-3475.82Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P100491.7e-0842.86Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii OX=335... [more]
P142782.2e-0861.54Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum OX=4081... [more]
P142792.2e-0861.54Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersi... [more]
P073702.2e-0854.17Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=408... [more]
BLAST of Lsi04G024330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCG11.0e-4094.51Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3BVA01.0e-4094.51Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A1S3BWE11.0e-4094.51Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A6J1CK834.7e-3886.81Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN... [more]
A0A6J1FCV02.4e-3787.91Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=... [more]
BLAST of Lsi04G024330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453032.22.1e-4094.51PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m... [more]
KAA0064677.12.1e-4094.51chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. ma... [more]
XP_008453034.22.1e-4094.51PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis me... [more]
XP_038898449.16.1e-4093.41chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida][more]
XP_004145567.11.4e-3994.51chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus][more]
BLAST of Lsi04G024330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G76570.17.5e-3675.82Chlorophyll A-B binding family protein [more]
AT2G05100.17.8e-0958.97photosystem II light harvesting complex gene 2.1 [more]
AT2G05070.17.8e-0958.97photosystem II light harvesting complex gene 2.2 [more]
AT3G27690.17.8e-0958.97photosystem II light harvesting complex gene 2.3 [more]
AT1G29910.16.6e-0857.89chlorophyll A/B binding protein 3 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 2..92
NoneNo IPR availablePANTHERPTHR21649:SF74CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTICcoord: 2..92
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 56..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G024330.1Lsi04G024330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding