Lsi04G023860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G023860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Usp domain-containing protein
Location	chr04: 31011933 .. 31012172 (+)
RNA-Seq Expression	Lsi04G023860
Synteny	Lsi04G023860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGTTTGAGAGGTACGGTAAGAAGAGGGTGATGGTGGTGGTGGATCATACATCGCAGTCCAAGCATGCTATGTTGTGGGCTCTTACTAATGTGGCCAATAAGGGTGATTTGTTCACTCTTCTTCATATTGTTTCTCACTCAAACAGGCTCTCTGAAATGCCTTCTGATTCTTCTTCCTCATTTCTTGCTAACTCTCTTGGCTACCTCTGCAAAGCTTCTAGACCTGAGGTATAA

mRNA sequence

ATGGAAGGGTTTGAGAGGTACGGTAAGAAGAGGGTGATGGTGGTGGTGGATCATACATCGCAGTCCAAGCATGCTATGTTGTGGGCTCTTACTAATGTGGCCAATAAGGGTGATTTGTTCACTCTTCTTCATATTGTTTCTCACTCAAACAGGCTCTCTGAAATGCCTTCTGATTCTTCTTCCTCATTTCTTGCTAACTCTCTTGGCTACCTCTGCAAAGCTTCTAGACCTGAGGTATAA

Coding sequence (CDS)

ATGGAAGGGTTTGAGAGGTACGGTAAGAAGAGGGTGATGGTGGTGGTGGATCATACATCGCAGTCCAAGCATGCTATGTTGTGGGCTCTTACTAATGTGGCCAATAAGGGTGATTTGTTCACTCTTCTTCATATTGTTTCTCACTCAAACAGGCTCTCTGAAATGCCTTCTGATTCTTCTTCCTCATTTCTTGCTAACTCTCTTGGCTACCTCTGCAAAGCTTCTAGACCTGAGGTATAA

Protein sequence

MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSSSSFLANSLGYLCKASRPEV

Homology

[Close]

BLAST of Lsi04G023860 vs. ExPASy TrEMBL
Match: A0A0A0KYK7 (Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G364040 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHS-NRLSEMPSD- 60
          MEGFERYGKKRVMVVVDHTS SKHAMLWALT+VANKGDL TLLHIVSHS NRLSEMPSD 
Sbjct: 1  MEGFERYGKKRVMVVVDHTSNSKHAMLWALTHVANKGDLVTLLHIVSHSTNRLSEMPSDS 60

Query: 61 -SSSSFLANSLGYLCKASRPEV 80
           SSSSFLANSLGYLCKASRPEV
Sbjct: 61 SSSSSFLANSLGYLCKASRPEV 82

[Close]

BLAST of Lsi04G023860 vs. ExPASy TrEMBL
Match: A0A5A7TPE6 (UspA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00780 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.5e-31
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHS-NRLSEMPSD- 60
          MEGFERYGKKRVMVVVDHTS SKHAMLWALT+VANKGDL TLLHIVSHS NRLSEMPS+ 
Sbjct: 1  MEGFERYGKKRVMVVVDHTSNSKHAMLWALTHVANKGDLVTLLHIVSHSTNRLSEMPSES 60

Query: 61 SSSSFLANSLGYLCKASRPEV 80
          SSSSFLANSLGYLCKASRPEV
Sbjct: 61 SSSSFLANSLGYLCKASRPEV 81

[Close]

BLAST of Lsi04G023860 vs. ExPASy TrEMBL
Match: A0A1S3B978 (uncharacterized protein LOC103487581 OS=Cucumis melo OX=3656 GN=LOC103487581 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.5e-31
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHS-NRLSEMPSD- 60
          MEGFERYGKKRVMVVVDHTS SKHAMLWALT+VANKGDL TLLHIVSHS NRLSEMPS+ 
Sbjct: 1  MEGFERYGKKRVMVVVDHTSNSKHAMLWALTHVANKGDLVTLLHIVSHSTNRLSEMPSES 60

Query: 61 SSSSFLANSLGYLCKASRPEV 80
          SSSSFLANSLGYLCKASRPEV
Sbjct: 61 SSSSFLANSLGYLCKASRPEV 81

[Close]

BLAST of Lsi04G023860 vs. ExPASy TrEMBL
Match: A0A6J1FLX8 (uncharacterized protein LOC111446414 OS=Cucurbita moschata OX=3662 GN=LOC111446414 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSS 60
          MEGFER+GKKRVMVVVDH+SQSKHAMLWALT+VANKGDLFTLLHIVSHSN+LSE P   S
Sbjct: 1  MEGFERFGKKRVMVVVDHSSQSKHAMLWALTHVANKGDLFTLLHIVSHSNKLSETP--DS 60

Query: 61 SSFLANSLGYLCKASRPEV 80
          SSFLANSLGYLCKASRPEV
Sbjct: 61 SSFLANSLGYLCKASRPEV 77

[Close]

BLAST of Lsi04G023860 vs. ExPASy TrEMBL
Match: A0A6J1IYE7 (uncharacterized protein LOC111480323 OS=Cucurbita maxima OX=3661 GN=LOC111480323 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.3e-30
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSS 60
          MEGFER GKKRVMVVVDH+SQSKHAMLWALT+VANKGDLFTLLHIVSHSN+LSE P   S
Sbjct: 1  MEGFERCGKKRVMVVVDHSSQSKHAMLWALTHVANKGDLFTLLHIVSHSNKLSETP--DS 60

Query: 61 SSFLANSLGYLCKASRPEV 80
          SSFLANSLGYLCKASRPEV
Sbjct: 61 SSFLANSLGYLCKASRPEV 77

[Close]

BLAST of Lsi04G023860 vs. NCBI nr
Match: XP_038898922.1 (uncharacterized protein LOC120086377 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 5.1e-34
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSS 60
          ME FERYGKKRVMVVVDHTSQSKHAM+WALT+VANKGDLFTLLHIVSHSNRLSEMPSDSS
Sbjct: 1  MERFERYGKKRVMVVVDHTSQSKHAMMWALTHVANKGDLFTLLHIVSHSNRLSEMPSDSS 60

Query: 61 SSFLANSLGYLCKASRPEV 80
          SSFLANSLGYLCKASRPEV
Sbjct: 61 SSFLANSLGYLCKASRPEV 79

[Close]

BLAST of Lsi04G023860 vs. NCBI nr
Match: XP_004142622.1 (uncharacterized protein LOC101217745 [Cucumis sativus] >KGN54573.1 hypothetical protein Csa_012648 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHS-NRLSEMPSD- 60
          MEGFERYGKKRVMVVVDHTS SKHAMLWALT+VANKGDL TLLHIVSHS NRLSEMPSD 
Sbjct: 1  MEGFERYGKKRVMVVVDHTSNSKHAMLWALTHVANKGDLVTLLHIVSHSTNRLSEMPSDS 60

Query: 61 -SSSSFLANSLGYLCKASRPEV 80
           SSSSFLANSLGYLCKASRPEV
Sbjct: 61 SSSSSFLANSLGYLCKASRPEV 82

[Close]

BLAST of Lsi04G023860 vs. NCBI nr
Match: XP_023523706.1 (uncharacterized protein LOC111787863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSS 60
          MEGFERYGKKRVMVVVDH+SQSKHAMLWALT+VANKGDLFTLLHIVSHSN+LSE P   S
Sbjct: 1  MEGFERYGKKRVMVVVDHSSQSKHAMLWALTHVANKGDLFTLLHIVSHSNKLSETP--DS 60

Query: 61 SSFLANSLGYLCKASRPEV 80
          SSFLANSLGYLCKASRPEV
Sbjct: 61 SSFLANSLGYLCKASRPEV 77

[Close]

BLAST of Lsi04G023860 vs. NCBI nr
Match: XP_008444147.1 (PREDICTED: uncharacterized protein LOC103487581 [Cucumis melo] >KAA0045242.1 UspA [Cucumis melo var. makuwa] >TYK19270.1 UspA [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHS-NRLSEMPSD- 60
          MEGFERYGKKRVMVVVDHTS SKHAMLWALT+VANKGDL TLLHIVSHS NRLSEMPS+ 
Sbjct: 1  MEGFERYGKKRVMVVVDHTSNSKHAMLWALTHVANKGDLVTLLHIVSHSTNRLSEMPSES 60

Query: 61 SSSSFLANSLGYLCKASRPEV 80
          SSSSFLANSLGYLCKASRPEV
Sbjct: 61 SSSSFLANSLGYLCKASRPEV 81

[Close]

BLAST of Lsi04G023860 vs. NCBI nr
Match: XP_022940999.1 (uncharacterized protein LOC111446414 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MEGFERYGKKRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSS 60
          MEGFER+GKKRVMVVVDH+SQSKHAMLWALT+VANKGDLFTLLHIVSHSN+LSE P   S
Sbjct: 1  MEGFERFGKKRVMVVVDHSSQSKHAMLWALTHVANKGDLFTLLHIVSHSNKLSETP--DS 60

Query: 61 SSFLANSLGYLCKASRPEV 80
          SSFLANSLGYLCKASRPEV
Sbjct: 61 SSFLANSLGYLCKASRPEV 77

[Close]

BLAST of Lsi04G023860 vs. TAIR 10
Match: AT1G44760.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-17
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 10  KRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIVSHSNRLSEMPSDSSSSFLANSLG 69
           KRVMVVVD +S+SKHAM+WALT++ NKGDL TLLH+VS        P D ++  LA SLG
Sbjct: 63  KRVMVVVDESSRSKHAMMWALTHLTNKGDLVTLLHVVS--------PDDEATPSLAQSLG 122

Query: 70  YLCKASRPEV 80
            LCKA +PEV
Sbjct: 123 SLCKACKPEV 124

[Close]

BLAST of Lsi04G023860 vs. TAIR 10
Match: AT1G69080.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.1e-05
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 10  KRVMVVVDHTSQSKHAMLWALTNVANKGDLFTLLHIV----SHSNRLS----------EM 69
           +R++VVVD  S++K+A+LW L++ A   D   LLH +    S S  L+          + 
Sbjct: 44  RRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDK 103

Query: 70  PSDSSSSFLANSLGYLCKASRPEV 80
           P+ S +    ++L  +C+  RPEV
Sbjct: 104 PTTSRADKKVSALKTMCELKRPEV 127

[Close]

BLAST of Lsi04G023860 vs. TAIR 10
Match: AT2G03720.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.1e-05
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 13 MVVVDHTSQSKHAMLWALTNVANKGDLFTLLHI----VSHSNRLSEMPSDSSSSFLANSL 72
          MVVVD TSQ+K+A+ WALT+     D  TLLH+    V  +   ++   +S +  L + L
Sbjct: 1  MVVVDTTSQTKNALQWALTHCVQDEDNITLLHVTRTPVGQAIDETQRERNSRAHELVHPL 60

Query: 73 GYLCKASRPEV 80
             C+  +P V
Sbjct: 61 KNFCQLKKPNV 71

The following BLAST results are available for this feature:

BLAST of Lsi04G023860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G023860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYK7	3.4e-31	92.68	Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G364040 PE=4 SV...	[more]
A0A5A7TPE6	7.5e-31	92.59	UspA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00780 PE=4 SV=...	[more]
A0A1S3B978	7.5e-31	92.59	uncharacterized protein LOC103487581 OS=Cucumis melo OX=3656 GN=LOC103487581 PE=...	[more]
A0A6J1FLX8	2.2e-30	89.87	uncharacterized protein LOC111446414 OS=Cucurbita moschata OX=3662 GN=LOC1114464...	[more]
A0A6J1IYE7	8.3e-30	89.87	uncharacterized protein LOC111480323 OS=Cucurbita maxima OX=3661 GN=LOC111480323...	[more]

BLAST of Lsi04G023860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898922.1	5.1e-34	96.20	uncharacterized protein LOC120086377 [Benincasa hispida]	[more]
XP_004142622.1	6.9e-31	92.68	uncharacterized protein LOC101217745 [Cucumis sativus] >KGN54573.1 hypothetical ...	[more]
XP_023523706.1	1.5e-30	91.14	uncharacterized protein LOC111787863 [Cucurbita pepo subsp. pepo]	[more]
XP_008444147.1	1.5e-30	92.59	PREDICTED: uncharacterized protein LOC103487581 [Cucumis melo] >KAA0045242.1 Usp...	[more]
XP_022940999.1	4.5e-30	89.87	uncharacterized protein LOC111446414 [Cucurbita moschata]	[more]

BLAST of Lsi04G023860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44760.1	6.1e-17	61.43	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT1G69080.1	9.1e-05	32.14	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]
AT2G03720.1	9.1e-05	36.62	Adenine nucleotide alpha hydrolases-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006016	UspA	PFAM	PF00582	Usp	coord: 10..59 e-value: 8.4E-7 score: 29.6
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620	HUPs	coord: 9..75 e-value: 6.9E-6 score: 28.5
None	No IPR available	PANTHER	PTHR47125	ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN	coord: 7..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G023860.1	Lsi04G023860.1	mRNA