Lsi04G015000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G015000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1
Locationchr04: 22672024 .. 22675912 (-)
RNA-Seq ExpressionLsi04G015000
SyntenyLsi04G015000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCATATCTTAAGTTAGTCTAAAGGTAAAAAAGGATCATGAGTTTAATAAAAAGATTTCAATCTATATTGACCACCTACTTAGGATTTAGGATTTATATCTTATAAGTTTTCTTGATACTCAAATGCAATTGTCCTTGATATTAATCAAAAGTGTATATAAGTTGGCTCGAACACTGATAAATATTTATGTGAACCCTAAAATTTAAGCTAGCTTATATTTTTATTCTAACAGCCTGTGTAATTTCAATTTGTCTATAAACTTCGTTAACTGTTTCCAAAATAACAAGTGGGCCAAAAGCCTTCGTATTGATCGTTTTCCTTTGCAGGCCATCTTAAACAAAAGCCTATCTCACTTTTGCGGGTATTGTGGTAGACTGCGCTCGATTGGCGACTGAGGTATACACTAAAATCGTTCGATCTTAACATCTCTTTGCGCTCGAGCTAATGTTGTTTTCGCTATGAATTTTCGCACCCTTTGTCCAGTTCATTCCTGATTCCCCTCGTTATCAGCTTCTCCGTTTGTGGCGTCTCCGCTGCGAGCAATGGTGCTGACCAACTTCAATGGAACTGGCGTTGGATTCGGTACAATAGATTCAATAATCTTGAGTTCGTAATGATATATTTTGAACATTCTTATCTTTTCTGTCTTTTTAACTGATTCTTGCTGTTTTTTTCTTTATTTCGAGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGGTATGTAACATCTGACCACGGTTATTTACGATCGTTTTCCTCTTTAGCTTGATTTCTTTCATGTACCTGTTGTACTTGGGGAGCTTGATCATGATTTCAGGCATTTTGTTTATCTGGATTGTTTCTCAAATTAGGTTGGTTAATATATTAGCTGGGTGAAGTCGGCTGAAGAGAATTTCAGGAATGCTATGAAATGAATGCTACTGAACCCTGAGGGTTTTGAATTATGAATTGAAATAGATTTGTGCACAGATCAGAAAGGAGGTTTGATGATTAGTTGATCGTTTGAAAATGATTTGTGTTGTTCTTGTTTAGCTATCGTTGGTGACTTGGCAATGTCTCTGTCTCTCTATTATTTTGAAATGAACTGGCAGGCCTGAGGTATACCAATTTAACAGGTTATTTACTTGGAATAAATAGAGCCTTTTCTTTTGGCAAGTGTGGTGAAGATGGTGGAGTTGCTTTGTGATTGGTAGAGGCAGAACAATGAAATGTAAGGCTGGAAGTTATAACCTGTACTTGTACACTCATATGCTTCATGAATTTGTTAGTGCTGATCTATCCACATCATTGATCTTAAGATGTCTACATCATGCGCTAGCCACAGACACAACTTGGAATTCCACCTCCAACAGCAAGTAGTTCTTGAATGCCCCATTTATTATGTATGTATGTATCAATTCGTGTGTTTGTGTCTGAAATCTACTAGTTACATTACACTAAAAGAAGTATATATACATGTCGAGTGATAGTCTTGTTCAATGAGAGCTTTTACATCAGAAGTTATGGAGTATCTTGTCTTGACTGGTGAAGGATTAATAGTCAAGTTCAAGTTGTTCAACCCATGATCCTTATTTGACAAGGAAGCCAACCCATGATGGTTCTATCTTATAAGTTTGCATAACATCAAAAGTTGGAAGGAATCAAACAGTTTTTCCACAGGTTAATGGAAAGGGTGTAAGCTTCCTTAATCGGTTAATCCTTGGATACCTATAGACAAGAATCTTGACGGGTTTGAAACTAAGCTCTGTGCCTCTTTTGCAACTCTCATTTTCGCTGTTTGGGATATTAGAAGAGTCTGGAACTTTATGTTGGTATGGATTTAGTTTATCTCTCCTCGTTCTTTATTGGAAGGTTTGTATTTCATACTTTAAATTCTATCTAGTTTGCAAATTGTTATGGAAGATTACGTCTTCATGTTCAGATGATCCGATTTCTGTTTATGGACTTTAAAAGTTAAGATTTCTTTCTGCATTAGAACTGGGTTTTAATTTCTGCATGGGAAGCATGGAAGTTATGGTCCTCTATATAACTTTTAGATCCAGTTGTATATTCCATTATTTCCCTTTCAGGTTTCCAGGCACATATTATTCTTTAACATGAAAGATATAGTTTTTCTGCCATGACGTGCCTCACCTGAATAAAGATGTTTATTTACAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTAACCAACTAGAATATACGCTACATACAAATTATTTTCCTTAATCACATTCATCTGATTGCGCTTAGTTATTTATTTGTAATCCTTTTCCGTAGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCGAGGATGATATTTCAGGGAATGGAATTTGACAGGAAGGATCAAAATCAGAGTTGTGATATCAAGGACTCAAAAGATTTATCCAGAAAAGTTTGAGCTTAATCTCTCCCTTATTATTGGCTAGTTTAAGTCTTCAGCATTCTAAGAGTTTTTTAAAAATATTTTGAACCCTTTTTGGATGGAATTGAGATAACATCTGATCGTATACTTGTACCTTCATCAGATTGTATAAAAGTTACTTTGCTTTTGTCGATCAATTTTTCAAAATACTAGATAAGTTTATATCATAAGGGCATCTTAACCGTAAGAAGGTCACTCACGATCTCTGCACCAATCTTCATGCGGATAGCGCTTTCAACCAGAATCACTTTGCACACATCATGGTTTCAAAAGCTTGTCATGTGATCCTTGGCCGTTTCTGTGTTCATTCTATTGCTTTCTTATATATGTGAAGCGTTATTCTCTCTTCCAGTCGTGCAGTTGCATTTAGTTGGCGAATAGACATGACAGGAAACTATTTGGTTTCACGGGGGCTTCTCCTTTTCTGTCTTGTCCTCTTAAATAAGGTTCTTGACGCTGCAAGTACAAGAAAATTGATGCTTGGGAGTGACGTGATTACTCATGAAATAAGAAATGGCCTTCCAGATGACACAAACGTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGGAATATCAGCTGGTGGTGGCTCTGGCGTCGGGACTAAGGGAGGCTTTGGCTCAGGTTACGGTGGTTCTGGACCTGGTGGATTCGGTCCGGGCATTGGTTCTGGCTCGGATGGTGGCTTTGGACCTGGAATTGGGTATGGCTCAGGTTCAGGCTTTGGTGGTGTAGGTGGCGGATTCGGTGGTTCAGGTGGCATCGGAGGTATCGTGGGTAGCGGTGGCGGCGGACTAGGCAGTTCAGGTGGTATTGTGGGTGGCAGTGGTGGTGGAGTAAGTGGGTCTGGAGGCATGGGTGGTGGTGGTTATGGTGGGTCGGGAGGCATGGGTGGCGGCGGCAGCGATGGCGTTTATGGTGGCAACATGAATAATCCTTAATCGATGAGCACCAACGCTATATCGAGCATAATTCATTGCTAAGATGTTTAACAAGACAAGTTTCTTAATTAAGGAAGGAGACAAATAAAGATACTTGTTCCTCTTTATGTTTTTATAATTAATGAAATTGATAAGAGAACACTACCTCTTTTTGTAGTCTTAAATTTGCTCGATATAAAAGTAAAACTTTTTCGATGTTAGGAAGATGGCACCTAATGAAATTGTATACACCATCTTAGAAAGCATGTCTTGTCAGAATTCTTCACTAAGACTTACCATTTACTAAAATAATTGTCCATTTTTAAGTCCACCTCAAGAATTTCATTGCCTTAAAATGTCCTTTTAACTGGCAAGAAATTTCACTGTCCAATCTTAAATAGGTAAATGGAGAATATGGAGTGGTTGTTTGAAACTGAATTCCATGGACCAAGAAGGTTAGC

mRNA sequence

AAACCATATCTTAAGTTAGTCTAAAGGTAAAAAAGGATCATGAGTTTAATAAAAAGATTTCAATCTATATTGACCACCTACTTAGGATTTAGGATTTATATCTTATAAGTTTTCTTGATACTCAAATGCAATTGTCCTTGATATTAATCAAAAGTGTATATAAGTTGGCTCGAACACTGATAAATATTTATGTGAACCCTAAAATTTAAGCTAGCTTATATTTTTATTCTAACAGCCTGTGTAATTTCAATTTGTCTATAAACTTCGTTAACTGTTTCCAAAATAACAAGTGGGCCAAAAGCCTTCGTATTGATCGTTTTCCTTTGCAGGCCATCTTAAACAAAAGCCTATCTCACTTTTGCGGGTATTGTGGTAGACTGCGCTCGATTGGCGACTGAGTTCATTCCTGATTCCCCTCGTTATCAGCTTCTCCGTTTGTGGCGTCTCCGCTGCGAGCAATGGTGCTGACCAACTTCAATGGAACTGGCGTTGGATTCGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGACAAGAATCTTGACGGGTTTGAAACTAAGCTCTGTGCCTCTTTTGCAACTCTCATTTTCGCTGTTTGGGATATTAGAAGAGTCTGGAACTTTATGTTGTTTATCTCTCCTCGTTCTTTATTGGAAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCGAGGATGATATTTCAGGGAATGGAATTTGACAGGAAGGATCAAAATCAGAGTTGTGATATCAAGGACTCAAAAGATTTATCCAGAAAAGTTTGAGCTTAATCTCTCCCTTATTATTGGCTAGTTTAAGTCTTCAGCATTCTAAGAGTTTTTTAAAAATATTTTGAACCCTTTTTGGATGGAATTGAGATAACATCTGATCGTATACTTGTACCTTCATCAGATTGTATAAAAGTTACTTTGCTTTTGTCGATCAATTTTTCAAAATACTAGATAAGTTTATATCATAAGGGCATCTTAACCGTAAGAAGGTCACTCACGATCTCTGCACCAATCTTCATGCGGATAGCGCTTTCAACCAGAATCACTTTGCACACATCATGGTTTCAAAAGCTTGTCATGTGATCCTTGGCCGTTTCTGTGTTCATTCTATTGCTTTCTTATATATGTGAAGCGTTATTCTCTCTTCCAGTCGTGCAGTTGCATTTAGTTGGCGAATAGACATGACAGGAAACTATTTGGTTTCACGGGGGCTTCTCCTTTTCTGTCTTGTCCTCTTAAATAAGGTTCTTGACGCTGCAAGTACAAGAAAATTGATGCTTGGGAGTGACGTGATTACTCATGAAATAAGAAATGGCCTTCCAGATGACACAAACGTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGGAATATCAGCTGGTGGTGGCTCTGGCGTCGGGACTAAGGGAGGCTTTGGCTCAGGTTACGGTGGTTCTGGACCTGGTGGATTCGGTCCGGGCATTGGTTCTGGCTCGGATGGTGGCTTTGGACCTGGAATTGGGTATGGCTCAGGTTCAGGCTTTGGTGGTGTAGGTGGCGGATTCGGTGGTTCAGGTGGCATCGGAGGTATCGTGGGTAGCGGTGGCGGCGGACTAGGCAGTTCAGGTGGTATTGTGGGTGGCAGTGGTGGTGGAGTAAGTGGGTCTGGAGGCATGGGTGGTGGTGGTTATGGTGGGTCGGGAGGCATGGGTGGCGGCGGCAGCGATGGCGTTTATGGTGGCAACATGAATAATCCTTAATCGATGAGCACCAACGCTATATCGAGCATAATTCATTGCTAAGATGTTTAACAAGACAAGTTTCTTAATTAAGGAAGGAGACAAATAAAGATACTTGTTCCTCTTTATGTTTTTATAATTAATGAAATTGATAAGAGAACACTACCTCTTTTTGTAGTCTTAAATTTGCTCGATATAAAAGTAAAACTTTTTCGATGTTAGGAAGATGGCACCTAATGAAATTGTATACACCATCTTAGAAAGCATGTCTTGTCAGAATTCTTCACTAAGACTTACCATTTACTAAAATAATTGTCCATTTTTAAGTCCACCTCAAGAATTTCATTGCCTTAAAATGTCCTTTTAACTGGCAAGAAATTTCACTGTCCAATCTTAAATAGGTAAATGGAGAATATGGAGTGGTTGTTTGAAACTGAATTCCATGGACCAAGAAGGTTAGC

Coding sequence (CDS)

ATGGTGCTGACCAACTTCAATGGAACTGGCGTTGGATTCGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGACAAGAATCTTGACGGGTTTGAAACTAAGCTCTGTGCCTCTTTTGCAACTCTCATTTTCGCTGTTTGGGATATTAGAAGAGTCTGGAACTTTATGTTGTTTATCTCTCCTCGTTCTTTATTGGAAGGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGTGGGTGTGGTGTTGGATTGGGACTTGGATGGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCGAGGATGATATTTCAGGGAATGGAATTTGACAGGAAGGATCAAAATCAGAGTTGTGATATCAAGGACTCAAAAGATTTATCCAGAAAAGTTTGA

Protein sequence

MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFMLFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQNQSCDIKDSKDLSRKV
Homology
[Close]
BLAST of Lsi04G015000 vs. ExPASy Swiss-Prot
Match: Q8VY77 (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD5 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 63/131 (48.09%), Postives = 74/131 (56.49%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVL++F G GVGFGFGVGCGFG+GWGFG                                
Sbjct: 1   MVLSDFTGVGVGFGFGVGCGFGVGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQG+E +  D+
Sbjct: 61  ----------GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADK 89

Query: 121 NQSCDIKDSKD 132
            +      SK+
Sbjct: 121 REEVVANMSKN 89

[Close]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.1e-35
Identity = 88/134 (65.67%), Postives = 89/134 (66.42%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFD KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D+KDSKDLSR
Sbjct: 121 NQSYDMKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match: A0A1S3BVF8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 88/134 (65.67%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFD KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDSKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS DIKDSKD SR
Sbjct: 121 NQSYDIKDSKDSSR 92

[Close]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match: A0A6J1E543 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 85/134 (63.43%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFG+GWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGVGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD+KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D KDS DLSR
Sbjct: 121 NQSYDNKDSNDLSR 92

[Close]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match: A0A6J1F9U6 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 85/134 (63.43%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFG+GCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGIGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME D KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D KDSKDLSR
Sbjct: 121 NQSYDSKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match: A0A6J1IHM9 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477300 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 84/134 (62.69%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFG+GCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGIGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME D KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQ+ D KDSKDLSR
Sbjct: 121 NQTYDSKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 88/134 (65.67%), Postives = 89/134 (66.42%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFD KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D+KDSKDLSR
Sbjct: 121 NQSYDMKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. NCBI nr
Match: XP_008452624.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-34
Identity = 88/134 (65.67%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFD KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDSKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS DIKDSKD SR
Sbjct: 121 NQSYDIKDSKDSSR 92

[Close]
BLAST of Lsi04G015000 vs. NCBI nr
Match: XP_022159826.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 2.6e-33
Identity = 85/134 (63.43%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFGVGCGFG+GWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGVGCGFGVGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD+KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D KDS DLSR
Sbjct: 121 NQSYDNKDSNDLSR 92

[Close]
BLAST of Lsi04G015000 vs. NCBI nr
Match: XP_022937244.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937245.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_022937246.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita moschata] >XP_023535926.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >KAG6591411.1 hypothetical protein SDJN03_13757, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-33
Identity = 85/134 (63.43%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFG+GCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGIGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME D KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQS D KDSKDLSR
Sbjct: 121 NQSYDSKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. NCBI nr
Match: XP_022977146.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977147.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977148.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022977149.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-33
Identity = 84/134 (62.69%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVLTNFNG GVGFGFG+GCGFGIGWGFG                                
Sbjct: 1   MVLTNFNGAGVGFGFGIGCGFGIGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMPLNFLGLGAGGGCGVGLGLGWGFGTA+GSKYRSSRMIFQGME D KDQ
Sbjct: 61  ----------GMPLNFLGLGAGGGCGVGLGLGWGFGTAYGSKYRSSRMIFQGMELDNKDQ 92

Query: 121 NQSCDIKDSKDLSR 135
           NQ+ D KDSKDLSR
Sbjct: 121 NQTYDSKDSKDLSR 92

[Close]
BLAST of Lsi04G015000 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 63/131 (48.09%), Postives = 74/131 (56.49%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVL++F G GVGFGFGVGCGFG+GWGFG                                
Sbjct: 1   MVLSDFTGVGVGFGFGVGCGFGVGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQG+E +  D+
Sbjct: 61  ----------GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADK 89

Query: 121 NQSCDIKDSKD 132
            +      SK+
Sbjct: 121 REEVVANMSKN 89

[Close]
BLAST of Lsi04G015000 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 63/131 (48.09%), Postives = 74/131 (56.49%), Query Frame = 0 

Query: 1   MVLTNFNGTGVGFGFGVGCGFGIGWGFGDKNLDGFETKLCASFATLIFAVWDIRRVWNFM 60
           MVL++F G GVGFGFGVGCGFG+GWGFG                                
Sbjct: 1   MVLSDFTGVGVGFGFGVGCGFGVGWGFG-------------------------------- 60

Query: 61  LFISPRSLLEGMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDRKDQ 120
                     GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQG+E +  D+
Sbjct: 61  ----------GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADK 89

Query: 121 NQSCDIKDSKD 132
            +      SK+
Sbjct: 121 REEVVANMSKN 89

The following BLAST results are available for this feature:
BLAST of Lsi04G015000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY771.9e-2348.09Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=... [more]
BLAST of Lsi04G015000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0F85.1e-3565.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
A0A1S3BVF81.5e-3465.67protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo ... [more]
A0A6J1E5431.2e-3363.43protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordic... [more]
A0A6J1F9U61.6e-3363.43protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita mos... [more]
A0A6J1IHM93.6e-3362.69protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita max... [more]
BLAST of Lsi04G015000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141282.11.0e-3465.67protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus... [more]
XP_008452624.13.0e-3465.67PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucu... [more]
XP_022159826.12.6e-3363.43protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica ... [more]
XP_022937244.13.4e-3363.43protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita mosch... [more]
XP_022977146.17.5e-3362.69protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucurbita maxim... [more]
BLAST of Lsi04G015000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27695.11.4e-2448.09glycine-rich protein [more]
AT1G27695.21.4e-2448.09glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19359:SF115PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 5, CHLOROPLASTICcoord: 70..129
NoneNo IPR availablePANTHERPTHR19359CYTOCHROME B5coord: 70..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G015000.1Lsi04G015000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding