Lsi04G010810 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAACCCTAATCTTTTTCCAAGGATAATACGTTTTTCTTTCTCATTCTCTTCATCTCCTTCTTCGTCTATCGTCAGCATCCACAGCTGACGGGTTCTCTCTCTCGCTCTCCTAGTCGCAGGTCACCGCCGTCCAGTCGACGCCGTCGTGGGTTAGGCAAAATCCGCGCGCAACATCAGTCCGGCTGCCCTGTCTTTTCTCTGTTTCGGCGTTCGTTTGTGTAACCCACGACCTATTGGACCTTGAATCGACTTACCGTTCGATCTCTCAATTTTTGCGCAATTTGGAACACTGTACAGCAACGGATTGAGTTCTCTTTGTGAATTTTCATGGGTAACGATCATCTGTAAGCCTTTTTCAATTCAATTGAAATTTTTAGGTTTGAGTGTTAAATTTTGGAATTACTCTATGGATAGTTTCAGCTTGAAAAGATTCGTTAGTTCCGGACTGTCCATTCGAGGTCGAAAGGCGACTTCGAATCAGAAATTTCTTGATAAATATTTGAATCAGCAATGGCAAACAACAATAAAGAAGAGCCGAAGACCGCGCCCCAGCCCGATCGGTGGTATAACCTATCTCTTGGTCCTTCATTCAAGGATGAATCCTCCAACAAATTTTGCACTCTTCGATGTGAGTCAGTCAAATTGATCCCAAATTGAAAAACAAAACCTAATTGGTGTAAATTCTTTTGCCGCGAAACTGCGGGATGTGAGAAATTAGTTTTTTTTTTTTTTTGCCTTTGTTTATTTCTTCTGTCAAATCGTTTGAATTGTTTTTGCATTGTGGTTTTAGATGAATTTAAGCCGGCGTCAATTGATAAAACGAAGTCGGGATCGCTGAAAAAGACCAAGGAAAATAGGGTTACTGTTGAATTTCAGAACAATCAATTTGGGAAACCCAATGTGGCGTTTGTTGGTAGTAGTGAGGATTATAAGGAGAATGATGCTGTTTTGTTTTTTGATGGCGAGACATTCCGGTTGGAGCGGCTGCACCGGGCGGTCAAGCAGCTTCGTCACCTTCGACAGCCAGGTGAATCTGCTGCTGCGGCTGCTGCCACTGCCACTGCCACTACCGCTGGCGTGGCTGCCCCCGCTGCCACATCTACCACTGCTTCTGTCCTTCATTCTTTGACGCCACCGGAGCCTCGGTTATCTCCGCCAGTGGCTAAAGTTTCCAAACCTATGCATATGGGTCGGGGCAGTTTTCCAACGATGCCGGTGAGAGCTCTTTATGAATTATTTCCTAATTGTATAAACTTATATGAAATAGAACAAGCATTTGAAATTTTGTTATTTACATGCTGAAAAAGTTTCATATTAGCCATGATACCATCTTAAATCACCAATTGACCCAAAAGCTTAAGCTGGCATGTGAGACAAATTTTAATATAATATCTAATACTCTCTCTCACTTGCGGGCTTGAAATATGAAGAATAGCCAAGCAAATGGAAATGGATATTAATTGGGGAGGAAACAACAATGCAGGGGTTTGAACTGAAGCAACCTGCTCTGGTACCATCTTAGATCACCAATTGACCCAAAAGCTTTGTTTCCTCTCCAATTAATATCCATTTCCATTTGCTTGGCTATTCTTCATATTTCAAGTCCGCAAGTGAGTGGGAGTGTTAGATATAATATTAAATTTGCCTTCACCTATAAACTTAAGTTTTTGGGTGAATCGGCGATTTAAGATGCGCTCTTGCTTCTGTAAGGCAAGAATCCCATAATTTATTTAAAGTGTTTTTGAACAAGATATTTTCTATGGATTGTATAACTTTGGCCTTTGAGTTCTAATACGTGCTGCATTTACAGGTAGAGGTGGAAAGAATAGATATTGGAGAGCCAGGAAATACAGGTCAATATGCTAATCTGGTTCTACTATAATTTTTCTGGATTTGTATGTAGTTTGTGGTAATCAGTTGGCTGTCCACTCCATGGTATTTGCTGATTGTGAAACGATTTCAGAGCAAACACTACCTCTGATTTCAAAATTGGATCCCTTACCTACTATGTAGTATATCCATTGTGGTTGTTTCTGCCCCATTGGTGTCTTAATTTACAACATGCAGTTTTTTCTTTTAAATAAGAAACCAAGCTTGAGAAAAATGAAAGGAACAAAAGGCAATGCAAAAATAATGAAAGAGAGCCCATGGAAAAAGGAGCCGTTGGTCACATAAAGTTGTAAAAAGGGGCTTTGTTGAGGAAATGAGAGGAAGAATAATGACAAAAGACCTTTGCTACAGAAATTTAAAGAAATTTGCTGTGCAGTTAGTCTGCATCTGTGTACTTATAGATGATGTGAGAGCAGTTTTATGCCTCGTAGGGATGGATCTTAGATTCTTAAGTTTCTAAGTGAGATATGTTAGTGTGTTGCAACTTTTGTTCTTCATCTTTAACCTTATTTTGGGAAGTTATCTTTTCTTAAGATGATAACTATTCATGAAGTCAGGATGTAATGTCGTCTGCAAGTTTCAGTCCTTACGGGCCTCTTGCATCATTCCTAACAGGATAAACGTTGAAAAGAAATGCATTTTGTTGATTATTTGTTTGAAGATTTTGAAGCATCGTCTAAACAGATTTTTCTTCTGGACTCTAATTTTTGTTTAATTTTTATGGGCAATAATTTGATAGTATCGCCCAGCATATTGAACAACCTGTTTTACTCAAAGAGTCAAGGCCAAACGACATTTATCTTTAGTAGAATTTATTGCTTCAATGTGTTCAGCGGATGTTGAAATCTTGTTCGCTGGATGTCTTTCGCTTTATTTGTAAGAACGCCATTCCTCCCAGAAATAAGTACACATTTTTCGGATATTCAGATTGTCTTTGGTTCCATTTGTCACTGTGGTGTTCTCCAATAGATGAAACAGGAGAATCTCTCTTCAGAATGTGGTTATTGCTTAGCTAAACAGTTCATGTCTTCTTATGTTCTTTGATGTTTCTTCTAGTGTTCAACTCTATAAGGGCTGCTGTTTTGATTATTTCATTGAACTTGAGCAAGTAAACATTCAAGTGATGTATGTTTTAATTATCACCATTCTTTCCTCTTATCTAAAATATGTTTATGCTCATGGCAGGTGCAAAATCTGGTGTTGCTAGTAAAGGGATTACGGATTACTCATCAGATCCACCAAATGTATCTGCTTCCTCTCCTGGCGTGAAGTATGATGATGAGCATCAAGATATACATATTGATGATATTTTTGGGTCTCTTTCATCTGATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGACTGGATTCGATATAAATATACCACATCAAAATGATACCGACGATGAGATTGCTGATGTGGATGATAGTGGCGACGAAGCTGAGAAAGGGCCTAATGCTGCAGAAGCCCTCAGAGCTCAGGTTAATGCTGAGGGTAGGGAGGGACCTACTGCAGCAGCTGCCCTCAGAGCTCAGGTTAATGCAGAGGGTAGGGACGACCAGAGCTCGAGTTCTAGTAGTAGCGGATCGGGCAGTGGCAGCAGCAGTGGAAGTAGCAGTGGCAGCAGTGACAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATCTGATGGAAATGAAGCTGAAGAAATCTTGAGGTTTGAGAAGCCGTCTACTGATGAGATCTTGAGCTTTGAGTAAGACTGTCAAAGTTCACACTTCATTGTGGTTCATACATAATTTTTCTAATGGAAGTTGAGTTTTTATTTCCGTATAAAAATTGTCGTGATGGAAATCAAACCACCGATCAAGAAGGGGGTGCATGCCAATTCTCGCTGAGCTAAGCTTATTTTGGCATTGAGGGTTGATTTGAATGCTAATAATTTAATTGTAACATAATTTTCAAATATAGTGATTTTGGTTCATGAGGTTCAATTCTACTGATGCAGGGTTTTATCTTTTGATTCAAATTTAGGACTTCTTAGCAGTAAAGAATAAATTTTGGGTAAAATTATACTTTTG CAAAAACCCTAATCTTTTTCCAAGGATAATACGTTTTTCTTTCTCATTCTCTTCATCTCCTTCTTCGTCTATCGTCAGCATCCACAGCTGACGGGTTCTCTCTCTCGCTCTCCTAGTCGCAGGTCACCGCCGTCCAGTCGACGCCGTCGTGGGTTAGGCAAAATCCGCGCGCAACATCAGTCCGGCTGCCCTGTCTTTTCTCTGTTTCGGCGTTCGTTTGTGTAACCCACGACCTATTGGACCTTGAATCGACTTACCGTTCGATCTCTCAATTTTTGCGCAATTTGGAACACTGTACAGCAACGGATTGAGTTCTCTTTGTGAATTTTCATGGTTTCAGCTTGAAAAGATTCGTTAGTTCCGGACTGTCCATTCGAGGTCGAAAGGCGACTTCGAATCAGAAATTTCTTGATAAATATTTGAATCAGCAATGGCAAACAACAATAAAGAAGAGCCGAAGACCGCGCCCCAGCCCGATCGGTGGTATAACCTATCTCTTGGTCCTTCATTCAAGGATGAATCCTCCAACAAATTTTGCACTCTTCGATATGAATTTAAGCCGGCGTCAATTGATAAAACGAAGTCGGGATCGCTGAAAAAGACCAAGGAAAATAGGGTTACTGTTGAATTTCAGAACAATCAATTTGGGAAACCCAATGTGGCGTTTGTTGGTAGTAGTGAGGATTATAAGGAGAATGATGCTGTTTTGTTTTTTGATGGCGAGACATTCCGGTTGGAGCGGCTGCACCGGGCGGTCAAGCAGCTTCGTCACCTTCGACAGCCAGGTGAATCTGCTGCTGCGGCTGCTGCCACTGCCACTGCCACTACCGCTGGCGTGGCTGCCCCCGCTGCCACATCTACCACTGCTTCTGTCCTTCATTCTTTGACGCCACCGGAGCCTCGGTTATCTCCGCCAGTGGCTAAAGTTTCCAAACCTATGCATATGGGTCGGGGCAGTTTTCCAACGATGCCGGTAGAGGTGGAAAGAATAGATATTGGAGAGCCAGGAAATACAGGTCAATATGCTAATCTGTTAGTCTGCATCTGTGTACTTATAGATGATGTGAGAGCAGTTTTATGCCTCGTAGGGATGGATCTTAGATTCTTAAGATGTAATGTCGTCTGCAAGTTTCAGTCCTTACGGGCCTCTTGCATCATTCCTAACAGGATAAACCGGATGTTGAAATCTTGTTCGCTGGATGTCTTTCGCTTTATTTGTAAGAACGCCATTCCTCCCAGAAATAAGTACACATTTTTCGGATATTCAGATTGTGCAAAATCTGGTGTTGCTAGTAAAGGGATTACGGATTACTCATCAGATCCACCAAATGTATCTGCTTCCTCTCCTGGCGTGAAGTATGATGATGAGCATCAAGATATACATATTGATGATATTTTTGGGTCTCTTTCATCTGATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGACTGGATTCGATATAAATATACCACATCAAAATGATACCGACGATGAGATTGCTGATGTGGATGATAGTGGCGACGAAGCTGAGAAAGGGCCTAATGCTGCAGAAGCCCTCAGAGCTCAGGTTAATGCTGAGGGTAGGGAGGGACCTACTGCAGCAGCTGCCCTCAGAGCTCAGGTTAATGCAGAGGGTAGGGACGACCAGAGCTCGAGTTCTAGTAGTAGCGGATCGGGCAGTGGCAGCAGCAGTGGAAGTAGCAGTGGCAGCAGTGACAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATCTGATGGAAATGAAGCTGAAGAAATCTTGAGGTTTGAGAAGCCGTCTACTGATGAGATCTTGAGCTTTGAGTAAGACTGTCAAAGTTCACACTTCATTGTGGTTCATACATAATTTTTCTAATGGAAGTTGAGTTTTTATTTCCGTATAAAAATTGTCGTGATGGAAATCAAACCACCGATCAAGAAGGGGGTGCATGCCAATTCTCGCTGAGCTAAGCTTATTTTGGCATTGAGGGTTGATTTGAATGCTAATAATTTAATTGTAACATAATTTTCAAATATAGTGATTTTGGTTCATGAGGTTCAATTCTACTGATGCAGGGTTTTATCTTTTGATTCAAATTTAGGACTTCTTAGCAGTAAAGAATAAATTTTGGGTAAAATTATACTTTTG ATGGCAAACAACAATAAAGAAGAGCCGAAGACCGCGCCCCAGCCCGATCGGTGGTATAACCTATCTCTTGGTCCTTCATTCAAGGATGAATCCTCCAACAAATTTTGCACTCTTCGATATGAATTTAAGCCGGCGTCAATTGATAAAACGAAGTCGGGATCGCTGAAAAAGACCAAGGAAAATAGGGTTACTGTTGAATTTCAGAACAATCAATTTGGGAAACCCAATGTGGCGTTTGTTGGTAGTAGTGAGGATTATAAGGAGAATGATGCTGTTTTGTTTTTTGATGGCGAGACATTCCGGTTGGAGCGGCTGCACCGGGCGGTCAAGCAGCTTCGTCACCTTCGACAGCCAGGTGAATCTGCTGCTGCGGCTGCTGCCACTGCCACTGCCACTACCGCTGGCGTGGCTGCCCCCGCTGCCACATCTACCACTGCTTCTGTCCTTCATTCTTTGACGCCACCGGAGCCTCGGTTATCTCCGCCAGTGGCTAAAGTTTCCAAACCTATGCATATGGGTCGGGGCAGTTTTCCAACGATGCCGGTAGAGGTGGAAAGAATAGATATTGGAGAGCCAGGAAATACAGGTCAATATGCTAATCTGTTAGTCTGCATCTGTGTACTTATAGATGATGTGAGAGCAGTTTTATGCCTCGTAGGGATGGATCTTAGATTCTTAAGATGTAATGTCGTCTGCAAGTTTCAGTCCTTACGGGCCTCTTGCATCATTCCTAACAGGATAAACCGGATGTTGAAATCTTGTTCGCTGGATGTCTTTCGCTTTATTTGTAAGAACGCCATTCCTCCCAGAAATAAGTACACATTTTTCGGATATTCAGATTGTGCAAAATCTGGTGTTGCTAGTAAAGGGATTACGGATTACTCATCAGATCCACCAAATGTATCTGCTTCCTCTCCTGGCGTGAAGTATGATGATGAGCATCAAGATATACATATTGATGATATTTTTGGGTCTCTTTCATCTGATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGACTGGATTCGATATAAATATACCACATCAAAATGATACCGACGATGAGATTGCTGATGTGGATGATAGTGGCGACGAAGCTGAGAAAGGGCCTAATGCTGCAGAAGCCCTCAGAGCTCAGGTTAATGCTGAGGGTAGGGAGGGACCTACTGCAGCAGCTGCCCTCAGAGCTCAGGTTAATGCAGAGGGTAGGGACGACCAGAGCTCGAGTTCTAGTAGTAGCGGATCGGGCAGTGGCAGCAGCAGTGGAAGTAGCAGTGGCAGCAGTGACAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATCTGA MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKSGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETFRLERLHRAVKQLRHLRQPGESAAAAAATATATTAGVAAPAATSTTASVLHSLTPPEPRLSPPVAKVSKPMHMGRGSFPTMPVEVERIDIGEPGNTGQYANLLVCICVLIDDVRAVLCLVGMDLRFLRCNVVCKFQSLRASCIIPNRINRMLKSCSLDVFRFICKNAIPPRNKYTFFGYSDCAKSGVASKGITDYSSDPPNVSASSPGVKYDDEHQDIHIDDIFGSLSSDDGNNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI Homology
BLAST of Lsi04G010810 vs. ExPASy Swiss-Prot
Match: Q91ZD6 (ELL-associated factor 2 OS=Mus musculus OX=10090 GN=Eaf2 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 2.6e-05 Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy Swiss-Prot
Match: Q5ZHP7 (ELL-associated factor 2 OS=Gallus gallus OX=9031 GN=EAF2 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 5.9e-05 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy Swiss-Prot
Match: Q96CJ1 (ELL-associated factor 2 OS=Homo sapiens OX=9606 GN=EAF2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 5.9e-05 Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy Swiss-Prot
Match: B4HQT6 (Ell-associated factor Eaf OS=Drosophila sechellia OX=7238 GN=Eaf PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04 Identity = 29/94 (30.85%), Postives = 56/94 (59.57%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy Swiss-Prot
Match: Q9D4C5 (ELL-associated factor 1 OS=Mus musculus OX=10090 GN=Eaf1 PE=1 SV=2) HSP 1 Score: 47.4 bits (111), Expect = 5.0e-04 Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy TrEMBL
Match: A0A6J1JWD6 (ELL-associated factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111489464 PE=3 SV=1) HSP 1 Score: 521.9 bits (1343), Expect = 2.5e-144 Identity = 309/442 (69.91%), Postives = 325/442 (73.53%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy TrEMBL
Match: A0A6J1FGX9 (ELL-associated factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111445589 PE=3 SV=1) HSP 1 Score: 521.5 bits (1342), Expect = 3.3e-144 Identity = 309/442 (69.91%), Postives = 325/442 (73.53%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy TrEMBL
Match: A0A1S3C0N3 (ELL-associated factor 2 OS=Cucumis melo OX=3656 GN=LOC103495125 PE=3 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 5.0e-140 Identity = 307/443 (69.30%), Postives = 319/443 (72.01%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy TrEMBL
Match: A0A0A0KM56 (EAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G210030 PE=3 SV=1) HSP 1 Score: 498.8 bits (1283), Expect = 2.3e-137 Identity = 306/442 (69.23%), Postives = 315/442 (71.27%), Query Frame = 0
BLAST of Lsi04G010810 vs. ExPASy TrEMBL
Match: A0A6J1DE82 (ELL-associated factor 1 OS=Momordica charantia OX=3673 GN=LOC111019621 PE=3 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 9.7e-120 Identity = 273/444 (61.49%), Postives = 291/444 (65.54%), Query Frame = 0
BLAST of Lsi04G010810 vs. NCBI nr
Match: XP_038893321.1 (ELL-associated factor 2-like [Benincasa hispida]) HSP 1 Score: 570.5 bits (1469), Expect = 1.3e-158 Identity = 338/444 (76.13%), Postives = 345/444 (77.70%), Query Frame = 0
BLAST of Lsi04G010810 vs. NCBI nr
Match: XP_022993461.1 (ELL-associated factor 1 [Cucurbita maxima] >XP_023551438.1 ELL-associated factor 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 521.9 bits (1343), Expect = 5.2e-144 Identity = 309/442 (69.91%), Postives = 325/442 (73.53%), Query Frame = 0
BLAST of Lsi04G010810 vs. NCBI nr
Match: XP_022939831.1 (ELL-associated factor 1 [Cucurbita moschata] >KAG7016756.1 Ell-associated factor Eaf [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 521.5 bits (1342), Expect = 6.9e-144 Identity = 309/442 (69.91%), Postives = 325/442 (73.53%), Query Frame = 0
BLAST of Lsi04G010810 vs. NCBI nr
Match: KAG6579241.1 (Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 519.2 bits (1336), Expect = 3.4e-143 Identity = 307/442 (69.46%), Postives = 324/442 (73.30%), Query Frame = 0
BLAST of Lsi04G010810 vs. NCBI nr
Match: XP_008454810.1 (PREDICTED: ELL-associated factor 2 [Cucumis melo] >XP_008454811.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]) HSP 1 Score: 507.7 bits (1306), Expect = 1.0e-139 Identity = 307/443 (69.30%), Postives = 319/443 (72.01%), Query Frame = 0
BLAST of Lsi04G010810 vs. TAIR 10
Match: AT1G71080.1 (RNA polymerase II transcription elongation factor ) HSP 1 Score: 235.0 bits (598), Expect = 1.2e-61 Identity = 185/446 (41.48%), Postives = 239/446 (53.59%), Query Frame = 0
BLAST of Lsi04G010810 vs. TAIR 10
Match: AT5G38050.1 (RNA polymerase II transcription elongation factor ) HSP 1 Score: 146.4 bits (368), Expect = 5.6e-35 Identity = 145/440 (32.95%), Postives = 189/440 (42.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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