Lsi04G010030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G010030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEnzymatic polyprotein
Locationchr04: 11206345 .. 11207346 (-)
RNA-Seq ExpressionLsi04G010030
SyntenyLsi04G010030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAACACAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATTATCAAAGATGCAGATTACTAGAAGGAACTAGTAACATTCTATAAGAAATATGGCGTTGAGCAAGGATTACCGCCATCAAAGAAAAAGAAAAAATCATCCAAAAGGCTTTTTAGCAGAAGCAAAAACAAGCAACAGAATGATGAAAAGCACCGAAAGAGGAAATATTATAACATAAGTAAGAAGTATTCTAAGAAAAAGGAAACTACTTGCTTCCGATGTAATAAACAGGGACATTATGCCAACAGATGCCCTTTGATGAAGAAGGTCAATAATCTAGAAATCGACAAAGACCTAAAACAACCTCTTCTCTTTGCTATTCGTGACAAAGAAGAAGATATGTCCATCTCGGGAGACTCTTCCACCGAAGAAGGATTTATCAATGAAGTAGTAGAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

mRNA sequence

ATGGAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

Coding sequence (CDS)

ATGGAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

Protein sequence

MENKLDMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEIWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALCLKDSSSEAESFDSSQYSDDAIPCTGCINVLTRDQEHMLDLIEELPDEASRRTALLKLCNSLEEQKSKAQEFEPI
Homology
BLAST of Lsi04G010030 vs. ExPASy TrEMBL
Match: A0A5D3DIF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001850 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 90/269 (33.46%), Postives = 125/269 (46.47%), Query Frame = 0

Query: 8   VNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEIW 67
           VN +VY  +KHFVGRTT+YS+Q+ EALL M+C KM+DFKWYKD FM+ +YN T CRD +W
Sbjct: 170 VNTVVYAAIKHFVGRTTLYSDQSMEALLGMKCPKMSDFKWYKDTFMSRLYNRTICRDVVW 229

Query: 68  KRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC------------- 127
           K K++EGL  Y+ EKFY     +     I+W  ++YGDI + IQ +C             
Sbjct: 230 KHKYVEGLHKYVREKFYSTMVTNSRGTDIDWGGISYGDINSTIQKVCLEIRQQQKHATKI 289

Query: 128 ------------------------------------------------------------ 185
                                                                       
Sbjct: 290 AKDLDYRREIGSFCKQYGIDNTPPSRKKSRSKKILGRSKTSESHGYSNRKSKYHGETEEL 349

BLAST of Lsi04G010030 vs. ExPASy TrEMBL
Match: A0A5A7UTK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00230 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 101/300 (33.67%), Postives = 134/300 (44.67%), Query Frame = 0

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           DMVNQL+YT+ KHF+G   ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C   
Sbjct: 604 DMVNQLLYTMTKHFIGSIQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAN 663

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
           IWK KF+EGLP YI++KFYQ  + +    QI+W  L Y DI++ +Q +C           
Sbjct: 664 IWKHKFVEGLPHYISQKFYQIMTANSVIQQIDWANLTYRDISSTVQMICVNLCTENKHTM 723

Query: 126 --LKD------------------------------------------------------- 185
             +KD                                                       
Sbjct: 724 KVIKDSDYRKELGTFCKQYGLSPGPKEEKNKKKKYSSKKFFRRNKPKDQEPPRRRRHYYN 783

Query: 186 ---------------------------------------SSSEAESFDSSQYSDD--AIP 189
                                                  SSSE E +  S+ SDD  AIP
Sbjct: 784 KNEETKQSLLYAIKSDDDTSSQTESSSEEDYINILQEEGSSSEDEFYSQSESSDDEGAIP 843

BLAST of Lsi04G010030 vs. ExPASy TrEMBL
Match: A0A5D3BA08 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00180 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 101/300 (33.67%), Postives = 134/300 (44.67%), Query Frame = 0

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           DMVNQL+YT+ KHF+G   ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C   
Sbjct: 441 DMVNQLLYTMTKHFIGSIQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAN 500

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
           IWK KF+EGLP YI++KFYQ  + +    QI+W  L Y DI++ +Q +C           
Sbjct: 501 IWKHKFVEGLPHYISQKFYQIMTANSVIQQIDWANLTYRDISSTVQMICVNLCTENKHTM 560

Query: 126 --LKD------------------------------------------------------- 185
             +KD                                                       
Sbjct: 561 KVIKDSDYRKELGTFCKQYGLSPGPKEEKNKKKKYSSKKFFRRNKPKDQEPPRRRRHYYN 620

Query: 186 ---------------------------------------SSSEAESFDSSQYSDD--AIP 189
                                                  SSSE E +  S+ SDD  AIP
Sbjct: 621 KNEETKQSLLYAIKSDDDTSSQTESSSEEDYINILQEEGSSSEDEFYSQSESSDDEGAIP 680

BLAST of Lsi04G010030 vs. ExPASy TrEMBL
Match: A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.1e-31
Identity = 106/340 (31.18%), Postives = 138/340 (40.59%), Query Frame = 0

Query: 6    DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
            DMVNQL+YT+ KHF+G T ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C  +
Sbjct: 733  DMVNQLLYTMTKHFIGSTQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAD 792

Query: 66   IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
            IWK+KF+EGLP YI++KFYQ  + +    QI+W  L YGDI++ +Q +C           
Sbjct: 793  IWKQKFVEGLPHYISQKFYQTMTANSVNQQIDWANLTYGDISSTVQMICVNLCTENKHTT 852

Query: 126  ------------------------------------------------------------ 185
                                                                        
Sbjct: 853  KVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKRYSSKKFFRKSKTKDQESPQRRKRHY 912

Query: 186  -------------------------------LKD-------------------------- 189
                                           LKD                          
Sbjct: 913  NKGKSKKGYSSKTHTICFKCNQKGHYANRCPLKDKINAMTIDEETKQSLLYAIRSDDDTT 972

BLAST of Lsi04G010030 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.1e-31
Identity = 106/340 (31.18%), Postives = 138/340 (40.59%), Query Frame = 0

Query: 6    DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
            DMVNQL+YT+ KHF+G T ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C  +
Sbjct: 733  DMVNQLLYTMTKHFIGSTQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAD 792

Query: 66   IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
            IWK+KF+EGLP YI++KFYQ  + +    QI+W  L YGDI++ +Q +C           
Sbjct: 793  IWKQKFVEGLPHYISQKFYQTMTANSVNQQIDWANLTYGDISSTVQMICVNLCTENKHTT 852

Query: 126  ------------------------------------------------------------ 185
                                                                        
Sbjct: 853  KVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKRYSSKKFFRKSKAKDQESPRRRRRHY 912

Query: 186  -------------------------------LKD-------------------------- 189
                                           LKD                          
Sbjct: 913  NKGKSKKGYSSKTHTICFKCNQKGHYANRCPLKDKINAMTIDEETKQSLLYAIRSDDDTT 972

BLAST of Lsi04G010030 vs. NCBI nr
Match: TYK23160.1 (hypothetical protein E5676_scaffold142G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-34
Identity = 90/269 (33.46%), Postives = 125/269 (46.47%), Query Frame = 0

Query: 8   VNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEIW 67
           VN +VY  +KHFVGRTT+YS+Q+ EALL M+C KM+DFKWYKD FM+ +YN T CRD +W
Sbjct: 170 VNTVVYAAIKHFVGRTTLYSDQSMEALLGMKCPKMSDFKWYKDTFMSRLYNRTICRDVVW 229

Query: 68  KRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC------------- 127
           K K++EGL  Y+ EKFY     +     I+W  ++YGDI + IQ +C             
Sbjct: 230 KHKYVEGLHKYVREKFYSTMVTNSRGTDIDWGGISYGDINSTIQKVCLEIRQQQKHATKI 289

Query: 128 ------------------------------------------------------------ 185
                                                                       
Sbjct: 290 AKDLDYRREIGSFCKQYGIDNTPPSRKKSRSKKILGRSKTSESHGYSNRKSKYHGETEEL 349

BLAST of Lsi04G010030 vs. NCBI nr
Match: TYJ96702.1 (hypothetical protein E5676_scaffold535G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-31
Identity = 101/300 (33.67%), Postives = 134/300 (44.67%), Query Frame = 0

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           DMVNQL+YT+ KHF+G   ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C   
Sbjct: 441 DMVNQLLYTMTKHFIGSIQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAN 500

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
           IWK KF+EGLP YI++KFYQ  + +    QI+W  L Y DI++ +Q +C           
Sbjct: 501 IWKHKFVEGLPHYISQKFYQIMTANSVIQQIDWANLTYRDISSTVQMICVNLCTENKHTM 560

Query: 126 --LKD------------------------------------------------------- 185
             +KD                                                       
Sbjct: 561 KVIKDSDYRKELGTFCKQYGLSPGPKEEKNKKKKYSSKKFFRRNKPKDQEPPRRRRHYYN 620

Query: 186 ---------------------------------------SSSEAESFDSSQYSDD--AIP 189
                                                  SSSE E +  S+ SDD  AIP
Sbjct: 621 KNEETKQSLLYAIKSDDDTSSQTESSSEEDYINILQEEGSSSEDEFYSQSESSDDEGAIP 680

BLAST of Lsi04G010030 vs. NCBI nr
Match: KAA0058440.1 (hypothetical protein E6C27_scaffold132G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-31
Identity = 101/300 (33.67%), Postives = 134/300 (44.67%), Query Frame = 0

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           DMVNQL+YT+ KHF+G   ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C   
Sbjct: 604 DMVNQLLYTMTKHFIGSIQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAN 663

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
           IWK KF+EGLP YI++KFYQ  + +    QI+W  L Y DI++ +Q +C           
Sbjct: 664 IWKHKFVEGLPHYISQKFYQIMTANSVIQQIDWANLTYRDISSTVQMICVNLCTENKHTM 723

Query: 126 --LKD------------------------------------------------------- 185
             +KD                                                       
Sbjct: 724 KVIKDSDYRKELGTFCKQYGLSPGPKEEKNKKKKYSSKKFFRRNKPKDQEPPRRRRHYYN 783

Query: 186 ---------------------------------------SSSEAESFDSSQYSDD--AIP 189
                                                  SSSE E +  S+ SDD  AIP
Sbjct: 784 KNEETKQSLLYAIKSDDDTSSQTESSSEEDYINILQEEGSSSEDEFYSQSESSDDEGAIP 843

BLAST of Lsi04G010030 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 106/340 (31.18%), Postives = 138/340 (40.59%), Query Frame = 0

Query: 6    DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
            DMVNQL+YT+ KHF+G T ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C  +
Sbjct: 733  DMVNQLLYTMTKHFIGSTQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAD 792

Query: 66   IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
            IWK+KF+EGLP YI++KFYQ  + +    QI+W  L YGDI++ +Q +C           
Sbjct: 793  IWKQKFVEGLPHYISQKFYQTMTANSVNQQIDWANLTYGDISSTVQMICVNLCTENKHTT 852

Query: 126  ------------------------------------------------------------ 185
                                                                        
Sbjct: 853  KVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKRYSSKKFFRKSKTKDQESPQRRKRHY 912

Query: 186  -------------------------------LKD-------------------------- 189
                                           LKD                          
Sbjct: 913  NKGKSKKGYSSKTHTICFKCNQKGHYANRCPLKDKINAMTIDEETKQSLLYAIRSDDDTT 972

BLAST of Lsi04G010030 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 106/340 (31.18%), Postives = 138/340 (40.59%), Query Frame = 0

Query: 6    DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
            DMVNQL+YT+ KHF+G T ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C  +
Sbjct: 733  DMVNQLLYTMTKHFIGSTQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAD 792

Query: 66   IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALC----------- 125
            IWK+KF+EGLP YI++KFYQ  + +    QI+W  L YGDI++ +Q +C           
Sbjct: 793  IWKQKFVEGLPHYISQKFYQTMTANSVNQQIDWANLTYGDISSTVQMICVNLCTENKHTT 852

Query: 126  ------------------------------------------------------------ 185
                                                                        
Sbjct: 853  KVIKDSDYRKELGTFCKQYGLSQGPKEEKKKKKKRYSSKKFFRKSKAKDQESPRRRRRHY 912

Query: 186  -------------------------------LKD-------------------------- 189
                                           LKD                          
Sbjct: 913  NKGKSKKGYSSKTHTICFKCNQKGHYANRCPLKDKINAMTIDEETKQSLLYAIRSDDDTT 972

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DIF52.7e-3433.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UTK41.2e-3133.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BA081.2e-3133.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BEY36.1e-3131.18Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69... [more]
A0A5A7UR296.1e-3131.18Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48... [more]
Match NameE-valueIdentityDescription
TYK23160.15.5e-3433.46hypothetical protein E5676_scaffold142G001850 [Cucumis melo var. makuwa][more]
TYJ96702.12.5e-3133.67hypothetical protein E5676_scaffold535G00180 [Cucumis melo var. makuwa][more]
KAA0058440.12.5e-3133.67hypothetical protein E6C27_scaffold132G00230 [Cucumis melo var. makuwa][more]
TYJ97599.11.3e-3031.18Enzymatic polyprotein [Cucumis melo var. makuwa][more]
KAA0056776.11.3e-3031.18Enzymatic polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33054FAMILY NOT NAMEDcoord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010030.1Lsi04G010030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding