Lsi04G006510 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGAGACGAACCCTTCATCTTTTACTTTTAGTCGCGTCCTGCATTTCCAAGTTCTCAAATTTTCTCAGATCCACTCGTTTTTCTCTTCGCCCATTTGATTAATTGATTCATTCAGTCCGACTTCTCTTTCAAATTTGCTTTCCCCTGTATCGATTAGAAACCCTAAATCCGCCCAGTCCAAGAAATTTTGGGGATTTTTTTCAGGTTGAAGATTTGGTATGGCTTCCAAAACAGCAACCAAAGATATCATCACTCTTCGCGGTTCTGCAGCGATTGTCAGCGAGTTCTTCGGTATTTTATGCTTCATTGCCTTCCGAAACCCTTTTAATTCGGTTGATTATCGATGAATAACCTTGGCTGATTTGTTCTTTTTCGTTTTCTTGAAATTTCTCATTTAGGGTATGCTGCAAATAGGTATGAATACTGGATATGCTTTCTCTGTTCTTATTTTTGTTATGGGATCGTGTAAATTTGCATTTTGTCACTTACAAGCGATGTTGATTGTAACTGTGTAGCATCCTTTACAATCGTGGGCTTTATCCGGAAGAAAGTTTTGTTAGGGTTAAGAAATATGGACTTCCTATGTTGCTTACTCAAGATGAAGGTGTTAAGACCTTCATTTCTAATCTAACTGCTCAGCTTTCTGGTTAGTTCCCTTTCTCTAAATGAAAGATTTGTAATTTCCAACAGTTCAGTATTGTATTTTTCTTTTTTCTCTTGCTGTAGTCCAGATTGTAGTGTGATTTATACTTTCCTGAGAATTATATTTATTGAGAAGTTTTGGAATCGTGAAATTGGTTTTAGAATGGCTGGAAGCTGGGAAGTTACAAAGGGTTGTGCTAGTTATAATGAGCAAATCCAACAATGAGGTCCTTGAGAGGTGGAATTTCAGAATCGAAACTGACGGAGAGGTGGTCGAGCAAGGGTATAACAAATTCAACGAAAGATTTCTCTTCCCCTTTCCTAAATTTTCTGGATTTTGTGTTGATTAGATGACATTGTTGCAGTGTGTCGAGGGAAAAGAGTGATAAAGAAATAATGAGGGAGATCCAAGCAATTATGAGACAGATTGCTTCAAGCATCACCTACTTGCCCTGCCTAGATGAACCCTGTAAGTGTTGGCAAAATCTTATATTTTAGTGATTGGTGTAAACATAATGCGATATTGTTTTAGCCGGGTTCTGAGTCCATGAGATGTCTAGTTTCCATTATGAAATTCATTATGCACAACCCTGTAAGTTTTGCTTCAATCATCACTTGCCTGCCTGATCCTTTGTTATTTTGGGGATTGGTTTGACGTGTGAAGGCTTATGTTTTTAGGCTGAGTTATGAATCAGTTGGATGCCATATAAGTTCCAGCATGAAATCATTTCCTTTAATAGCTGATTTGAACATTGCTTGAATGGCTAGGCATAGGCGTATCTTTCTTATGGGAATTAAGTTCAAATCAATACCCTTCTTTTATATTCTAAAAAGAAAATCATTAGTTTCTAATGATTTGCTACGGTCTTAGATGATAATCTAGATGTTTGAGCTCTTTTTCTTTTAGACGATACGATCCATCATGCTCAATCAAGTGTTACTCTGATGTTTTTGTTGTCTCAGGTGTATTTGATGTGTTAGCATATACTGATAAGGATCTTGCAGTTCCATTTACTTGGATGGAGAGTGATCCCAAACTGATTGCTAATCCACAAATGGTGAAGCTGCATTCTTTTGACACAAAGGTGAGGGAATGGGACTTTCGTGCAGGAATATCGAACTTATTTGTTTCCACTAATCTCGATTCGCAGCAAGTAAATTAACTTTTGAATGGTGGTGTCATTGCAGATTCACAAAGTGGACACTCTTGTTTCTTACAAGAATGATGATTGCGATGACGAGTAAAAAACAAAACAAACTCCCTTTTCTTCAATCTGTTGTCGGTTTCAGAATCCTCCAACCCAATCTCGCTTTCAAGGTGGCATTGTGAATCATTTATTCACAATTTTTATTGTACTATAACTTAGGAACAATGTTGTTGTGGATTCGATTAGAATTCTACCTGAATGAAATGGTTGAGGATTGTTTCTTTTTAAAGAAAACATATTTCTAATTCTACCTGAATGAAATGGTTGAGGATTGTTTCTTTTTAAAGAAAACATATTTCTACGGATAAGGTTGTTGTGTCTTTTAAGAACAAGAGTGGACCAAGTCTTGATCCACTCAGTTTAGCCAAATTCTTCGTTCAAACCAAAGATTTTTGTTCTCTAAATATAACAACCATCCATAATTAGAAACTTCCAAGTAAATTTATCTTGAAAAATCGAAAATTTTGATGAAGCCAAGAGAAGTTGTTGAGAAAAAAGAAAAAGGAAAAAGAAGAATGGGTTTAGATGGTGGTCTGTCTTGGGCAGATCAATGGGATAACAACCCTGACCCTCCACCACCATCTTCATCGGAAAATGAGAAGAAGAAGAACAAGGACGGGTCCTCAGACAAGAGCAAATTTAGGAAGACAATCTTGGGCTTCAAATGGATGAAAGAATTGCGAAAGAAATCTAACAAATCTTGAAAAACAGGCCCATAAAATCCCAATCGAAGTGAAATGAATCACTGTGTTTTCCCATTTTTATTTGTACTTTCTTCCCTTTTTGTTGAGCTCTGAATGAAAGAAGCCAGAAAATGAGAGCATAAAAATTCTGGTTTTCCCAAAACTCAGCATCCAATGAATTCTAATATATTATTACATTACAAGATTATGCTTCTTCTGTTCTTTTCTTCTTCTTCCAAACAAATTGTAGGGGTCGAGGACAAAAAGCTTCAGGTTTTTGAAAGATAATAGATGTCTTGTTCACAAACTATTTTTATATCATACATCTGAAATATGTCCAAA AGGAGACGAACCCTTCATCTTTTACTTTTAGTCGCGTCCTGCATTTCCAAGTTCTCAAATTTTCTCAGATCCACTCGTTTTTCTCTTCGCCCATTTGATTAATTGATTCATTCAGTCCGACTTCTCTTTCAAATTTGCTTTCCCCTGTATCGATTAGAAACCCTAAATCCGCCCAGTCCAAGAAATTTTGGGGATTTTTTTCAGGTTGAAGATTTGGTATGGCTTCCAAAACAGCAACCAAAGATATCATCACTCTTCGCGGTTCTGCAGCGATTGTCAGCGAGTTCTTCGGGTATGCTGCAAATAGGTATGAATACTGGATATGCTTTCTCTGTTCTTATTTTTGTTATGGGATCGTCATCCTTTACAATCGTGGGCTTTATCCGGAAGAAAGTTTTGTTAGGGTTAAGAAATATGGACTTCCTATGTTGCTTACTCAAGATGAAGGTGTTAAGACCTTCATTTCTAATCTAACTGCTCAGCTTTCTGATTGTAGTGTGATTTATACTTTCCTGAGAATTATATTTATTGAGAAGTTTTGGAATCGTGAAATTGAATGGCTGGAAGCTGGGAAGTTACAAAGGGTTGTGCTAGTTATAATGAGCAAATCCAACAATGAGGTCCTTGAGAGGTGGAATTTCAGAATCGAAACTGACGGAGAGGTGGTCGAGCAAGGTGTGTCGAGGGAAAAGAGTGATAAAGAAATAATGAGGGAGATCCAAGCAATTATGAGACAGATTGCTTCAAGCATCACCTACTTGCCCTGCCTAGATGAACCCTGTGTATTTGATGTGTTAGCATATACTGATAAGGATCTTGCAGTTCCATTTACTTGGATGGAGAGTGATCCCAAACTGATTGCTAATCCACAAATGGTGAAGCTGCATTCTTTTGACACAAAGGTGAGGGAATGGGACTTTCGTGCAGGAATATCGAACTTATTTGTTTCCACTAATCTCGATTCGCAGCAAATTCACAAAGTGGACACTCTTGTTTCTTACAAGAATGATGATTGCGATGACGAGTAAAAAACAAAACAAACTCCCTTTTCTTCAATCTGTTGTCGGTTTCAGAATCCTCCAACCCAATCTCGCTTTCAAGGTGGCATTGTGAATCATTTATTCACAATTTTTATTGTACTATAACTTAGGAACAATGTTGTTGTGGATTCGATTAGAATTCTACCTGAATGAAATGGTTGAGGATTGTTTCTTTTTAAAGAAAACATATTTCTACGGATAAGGTTGTTGTGTCTTTTAAGAACAAGAGTGGACCAAGTCTTGATCCACTCAGTTTAGCCAAATTCTTCGTTCAAACCAAAGATTTTTGTTCTCTAAATATAACAACCATCCATAATTAGAAACTTCCAAGTAAATTTATCTTGAAAAATCGAAAATTTTGATGAAGCCAAGAGAAGTTGTTGAGAAAAAAGAAAAAGGAAAAAGAAGAATGGGTTTAGATGGTGGTCTGTCTTGGGCAGATCAATGGGATAACAACCCTGACCCTCCACCACCATCTTCATCGGAAAATGAGAAGAAGAAGAACAAGGACGGGTCCTCAGACAAGAGCAAATTTAGGAAGACAATCTTGGGCTTCAAATGGATGAAAGAATTGCGAAAGAAATCTAACAAATCTTGAAAAACAGGCCCATAAAATCCCAATCGAAGTGAAATGAATCACTGTGTTTTCCCATTTTTATTTGTACTTTCTTCCCTTTTTGTTGAGCTCTGAATGAAAGAAGCCAGAAAATGAGAGCATAAAAATTCTGGTTTTCCCAAAACTCAGCATCCAATGAATTCTAATATATTATTACATTACAAGATTATGCTTCTTCTGTTCTTTTCTTCTTCTTCCAAACAAATTGTAGGGGTCGAGGACAAAAAGCTTCAGGTTTTTGAAAGATAATAGATGTCTTGTTCACAAACTATTTTTATATCATACATCTGAAATATGTCCAAA ATGGCTTCCAAAACAGCAACCAAAGATATCATCACTCTTCGCGGTTCTGCAGCGATTGTCAGCGAGTTCTTCGGGTATGCTGCAAATAGGTATGAATACTGGATATGCTTTCTCTGTTCTTATTTTTGTTATGGGATCGTCATCCTTTACAATCGTGGGCTTTATCCGGAAGAAAGTTTTGTTAGGGTTAAGAAATATGGACTTCCTATGTTGCTTACTCAAGATGAAGGTGTTAAGACCTTCATTTCTAATCTAACTGCTCAGCTTTCTGATTGTAGTGTGATTTATACTTTCCTGAGAATTATATTTATTGAGAAGTTTTGGAATCGTGAAATTGAATGGCTGGAAGCTGGGAAGTTACAAAGGGTTGTGCTAGTTATAATGAGCAAATCCAACAATGAGGTCCTTGAGAGGTGGAATTTCAGAATCGAAACTGACGGAGAGGTGGTCGAGCAAGGTGTGTCGAGGGAAAAGAGTGATAAAGAAATAATGAGGGAGATCCAAGCAATTATGAGACAGATTGCTTCAAGCATCACCTACTTGCCCTGCCTAGATGAACCCTGTGTATTTGATGTGTTAGCATATACTGATAAGGATCTTGCAGTTCCATTTACTTGGATGGAGAGTGATCCCAAACTGATTGCTAATCCACAAATGGTGAAGCTGCATTCTTTTGACACAAAGGTGAGGGAATGGGACTTTCGTGCAGGAATATCGAACTTATTTGTTTCCACTAATCTCGATTCGCAGCAAATTCACAAAGTGGACACTCTTGTTTCTTACAAGAATGATGATTGCGATGACGAGTAA MASKTATKDIITLRGSAAIVSEFFGYAANRYEYWICFLCSYFCYGIVILYNRGLYPEESFVRVKKYGLPMLLTQDEGVKTFISNLTAQLSDCSVIYTFLRIIFIEKFWNREIEWLEAGKLQRVVLVIMSKSNNEVLERWNFRIETDGEVVEQGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDLAVPFTWMESDPKLIANPQMVKLHSFDTKVREWDFRAGISNLFVSTNLDSQQIHKVDTLVSYKNDDCDDE Homology
BLAST of Lsi04G006510 vs. ExPASy Swiss-Prot
Match: Q9LU93 (Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana OX=3702 GN=MAD2 PE=1 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 1.2e-85 Identity = 177/270 (65.56%), Postives = 193/270 (71.48%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy Swiss-Prot
Match: Q9XFH3 (Mitotic spindle checkpoint protein MAD2 OS=Zea mays OX=4577 GN=MAD2 PE=2 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 1.4e-81 Identity = 170/269 (63.20%), Postives = 187/269 (69.52%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy Swiss-Prot
Match: Q556Y9 (Mitotic spindle assembly checkpoint protein MAD2A OS=Dictyostelium discoideum OX=44689 GN=mad2l1-1 PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 7.1e-46 Identity = 111/263 (42.21%), Postives = 144/263 (54.75%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy Swiss-Prot
Match: Q9Z1B5 (Mitotic spindle assembly checkpoint protein MAD2A OS=Mus musculus OX=10090 GN=Mad2l1 PE=1 SV=2) HSP 1 Score: 171.8 bits (434), Expect = 1.1e-41 Identity = 102/262 (38.93%), Postives = 139/262 (53.05%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy Swiss-Prot
Match: Q13257 (Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens OX=9606 GN=MAD2L1 PE=1 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.0e-39 Identity = 98/262 (37.40%), Postives = 137/262 (52.29%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy TrEMBL
Match: A0A0A0KPY5 (HORMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G590170 PE=3 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 2.2e-98 Identity = 205/269 (76.21%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy TrEMBL
Match: A0A6J1HTK5 (mitotic spindle checkpoint protein MAD2 OS=Cucurbita maxima OX=3661 GN=LOC111466640 PE=3 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 4.9e-98 Identity = 202/269 (75.09%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy TrEMBL
Match: A0A6J1GXP9 (mitotic spindle checkpoint protein MAD2 OS=Cucurbita moschata OX=3662 GN=LOC111458459 PE=3 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 4.9e-98 Identity = 202/269 (75.09%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy TrEMBL
Match: A0A6J1KEW7 (mitotic spindle checkpoint protein MAD2-like OS=Cucurbita maxima OX=3661 GN=LOC111493236 PE=3 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 3.2e-97 Identity = 201/269 (74.72%), Postives = 204/269 (75.84%), Query Frame = 0
BLAST of Lsi04G006510 vs. ExPASy TrEMBL
Match: A0A5A7STC2 (Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002160 PE=3 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 7.0e-97 Identity = 202/267 (75.66%), Postives = 203/267 (76.03%), Query Frame = 0
BLAST of Lsi04G006510 vs. NCBI nr
Match: KAE8648685.1 (hypothetical protein Csa_009142 [Cucumis sativus]) HSP 1 Score: 368.6 bits (945), Expect = 4.5e-98 Identity = 205/269 (76.21%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. NCBI nr
Match: XP_004135301.1 (mitotic spindle checkpoint protein MAD2 [Cucumis sativus]) HSP 1 Score: 368.6 bits (945), Expect = 4.5e-98 Identity = 205/269 (76.21%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. NCBI nr
Match: XP_022956917.1 (mitotic spindle checkpoint protein MAD2 [Cucurbita moschata] >XP_022967135.1 mitotic spindle checkpoint protein MAD2 [Cucurbita maxima] >XP_023534396.1 mitotic spindle checkpoint protein MAD2-like [Cucurbita pepo subsp. pepo] >KAG6601576.1 Mitotic spindle checkpoint protein MAD2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 367.5 bits (942), Expect = 1.0e-97 Identity = 202/269 (75.09%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. NCBI nr
Match: XP_023542211.1 (mitotic spindle checkpoint protein MAD2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 366.3 bits (939), Expect = 2.2e-97 Identity = 201/269 (74.72%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. NCBI nr
Match: KAG7012753.1 (Mitotic spindle checkpoint protein MAD2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 366.3 bits (939), Expect = 2.2e-97 Identity = 201/269 (74.72%), Postives = 205/269 (76.21%), Query Frame = 0
BLAST of Lsi04G006510 vs. TAIR 10
Match: AT3G25980.1 (DNA-binding HORMA family protein ) HSP 1 Score: 317.8 bits (813), Expect = 8.5e-87 Identity = 177/270 (65.56%), Postives = 193/270 (71.48%), Query Frame = 0
BLAST of Lsi04G006510 vs. TAIR 10
Match: AT3G25980.2 (DNA-binding HORMA family protein ) HSP 1 Score: 308.9 bits (790), Expect = 4.0e-84 Identity = 173/270 (64.07%), Postives = 189/270 (70.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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