Lsi04G001920 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGTATCATTGATTTTGGTTTTCGTTTTCGTTTGTAATCTTGATCGTTGTTTTCGAAAACAAATGAAGAATCCGATGGTTAAAGTTGTATGTGTACGACTTCTGTTATAGTGTTCTTTCATACCGTAGGATTTTGTCCTAAACCACGTTTAAGGTACATTTTCCTTCATAACGATTCCAAACAGATCGATGATTAGAAAATCCTAAACGAATTTGTGTTAGTCTTAGTCCTAAACGAGCTTAGTGACGAAGTTTCGAGTGTGTTTTTGCTATTTATTTATACAAGTCGGATGGAATCTGTGAAGTCTTTTTCATTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTTCGTTACACAATTTTCACAGCATGTCGTTTAAGCGTATTCTTCATTTCTTCTTTGAGCTTCCTTGTGAGATTTTCCCTTTTGGACTCTATTTTGTTGTAGGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATGTATACTTTTAAACTTAAAAACCATGCCGTGCTTTCAATCAATCCAACTAGTCAGTTAAACTTGTAATTCTAAAAATTAGTAGGATTGATCAGTATATCATATATGCTTTGGAAAACAAGCCATAAATTTTTATCACATTAAGACAATCCTCAAGGCGTAAGGTACAAAAGACCTTTGAAACATTGTTCAGATAATCAGATTAGAAACTCTGTCCATTGGTAAATCTGGATTATGTATAGCATCGTTCCAAAGTCCAAGCTCTCCTTAATTCTAGCGAACTGGAATCAGAGGACCATTTGGTTCACATTTTCTCAGGGATTCTAGATTTTGTTTTAAGTATCATTTCTTTTCTGACAGTAGAAAGTTTTTTCTTCTGTATGCTAATCGAAATATTGATAACCCTTCCCATCAATGGATGTATGGACATATCGACATGTTGACTGATGTATAAACCTTGATGCTTATGCTTGATTCCTAGTCTCTCTCTTTTATTTGTTGCTTCCTTTGACTGTGGTCTGTCATGTCTTAACAAGAAAGTTACCTCAAGTGGATTTGAGTCAATATCCTTCAATGATGCACCGGTTTTCCTTTAACTTTATCTTATTCAACGAGTTTTGGGCACGAGCAAAAACAATTTTCTTCTGACCTTTTTATCAAAGAATTCTAGCCAGAATAATGCAGGGTATAGGAGATGAGGTAATGGCATTGGTGGAAAGGAATTTTGACCATCTGAACTACATAGAGCCAACTTTTTTTATATTACAATGAGCTGCATTTATAGAAGTTAATCGGAGGAACGAAATGATTTTACTACTGTTATCCACTACTCATCAGACGATCATTTTCTGTTTTTAAAAAGCAGCAGCAGCGAACTTTTCAAGATGTGGAATGGCACCTTGATTTCCCTTTTTTTCCTTTTTGCCGTTTAACTGCAGAACTCAATATTGTAAATTTCACTTAACTACCCAAGATCTTCAGTAGTGGTATGTAGTTATCTTTGAATGCTTGCACACTTGTCTAATGCCATAAGTTCGGATGCTAAAAGTTGGAACAAGAAATCTTGGCAATGAATGTGCTTTTGTTGGACATAAAGTTCAGTAGTTGAGTGATCTTGGATTATCTTTACCTAACTATTATTTCTTTAAAGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATATATGATATTTAGATTATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAGGAAGGAATTGACAAAACAAATCGAAGTCTAATTCACTTCATTTCATCTCTTAAAAGGTCATTTTCCAGAGTTGCTACACAGAATAATTTTTTATTTGACTGACAATCATATAAACCGAAAGATATTTCTTGTCATTTGCATGCATGCTCCTCCAAAAGCACACATTAACGTAGGAGTAAGAATTGATTGGTAGCATACTTAATCAAACGGATATTTTTTTCGTCTAATATAAAGATCTCATACTACTTCATAAACTGAAAATCCCTACAAAAATACCGTTTAATTTACCAGTGTTGTTTGAATAGCCTGAGTTTGTTCTTGAAAGCTTTGCTTGATATATCCACCTTTTTTGAGATATATCAACTAAACTCTCAATTTTTAGCCCCAATTTTTGTCTCTAGATTGGGAAATAAAGCAGGGACAGTGATTGGGAGAAGGTCAAGAACACTCTTTTCAAGAGTCTTGTACTGCATACGGTAATCCTATATTAGAAACAAATTTGTAAGATATGTAAAGCAAATCGTAACTAGAATTAATGTTTATATGCTCCCTCACTATTGAACTTTATTTTATTTAAACTTAAATCAGGAGTCGAGGAATTGAAGCTCACGCAGTCATCTCGAATGGCCAAATTTTCTGATCCTACAAAAGTACTCAATTCTTTCCCTTCCTAATTTGACACATCTACTGATAAATTATTTTACGTCTATTTTAGGAGGACACGTATGGGAGTGATTCTTAAATGGTTAAAATTATTTTTGTCATTTTCAAAATCATTCTGAAACATGTTTTTAATCATTCAAAACCAATTTCGATGATATGATAATCACATTTAAAAGTGTAAAATTAATTTTGAGTGACTAAAGGTATGTTTTGAAATAATTAAGTGCATATTTGGG ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATATATGATATTTAGATTATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAGGAAGGAATTGACAAAACAAATCGAAGTCTAATTCACTTCATTTCATCTCTTAAAAGGTCATTTTCCAGAGTTGCTACACAGAATAATTTTTTATTTGACTGACAATCATATAAACCGAAAGATATTTCTTGTCATTTGCATGCATGCTCCTCCAAAAGCACACATTAACGTAGGAGTAAGAATTGATTGGTAGCATACTTAATCAAACGGATATTTTTTTCGTCTAATATAAAGATCTCATACTACTTCATAAACTGAAAATCCCTACAAAAATACCGTTTAATTTACCAGTGTTGTTTGAATAGCCTGAGTTTGTTCTTGAAAGCTTTGCTTGATATATCCACCTTTTTTGAGATATATCAACTAAACTCTCAATTTTTAGCCCCAATTTTTGTCTCTAGATTGGGAAATAAAGCAGGGACAGTGATTGGGAGAAGGTCAAGAACACTCTTTTCAAGAGTCTTGTACTGCATACGGAGTCGAGGAATTGAAGCTCACGCAGTCATCTCGAATGGCCAAATTTTCTGATCCTACAAAAGTACTCAATTCTTTCCCTTCCTAATTTGACACATCTACTGATAAATTATTTTACGTCTATTTTAGGAGGACACGTATGGGAGTGATTCTTAAATGGTTAAAATTATTTTTGTCATTTTCAAAATCATTCTGAAACATGTTTTTAATCATTCAAAACCAATTTCGATGATATGATAATCACATTTAAAAGTGTAAAATTAATTTTGAGTGACTAAAGGTATGTTTTGAAATAATTAAGTGCATATTTGGG ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAA MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIKGVQDAVTTIIEHMEEVRYEIAALEDK Homology
BLAST of Lsi04G001920 vs. ExPASy Swiss-Prot
Match: Q17Q97 (Required for excision 1-B domain-containing protein OS=Bos taurus OX=9913 GN=REX1BD PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05 Identity = 30/97 (30.93%), Postives = 59/97 (60.82%), Query Frame = 0
BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A0A0KUN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 6.2e-93 Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A5D3CFT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001610 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92 Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0
BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A1S3BGI9 (uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92 Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0
BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A6J1HYI6 (uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467775 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89 Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0
BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A6J1G147 (uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449729 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89 Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0
BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_038892275.1 (uncharacterized protein LOC120081463 [Benincasa hispida]) HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93 Identity = 181/206 (87.86%), Postives = 197/206 (95.63%), Query Frame = 0
BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_004135056.1 (uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical protein Csa_009032 [Cucumis sativus]) HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92 Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_008446706.1 (PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 uncharacterized protein E6C27_scaffold65G006350 [Cucumis melo var. makuwa] >TYK09169.1 uncharacterized protein E5676_scaffold475G001610 [Cucumis melo var. makuwa]) HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91 Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0
BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_023541138.1 (uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 340.5 bits (872), Expect = 1.0e-89 Identity = 179/208 (86.06%), Postives = 193/208 (92.79%), Query Frame = 0
BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_022945518.1 (uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 uncharacterized protein C19orf60 homolog [Cucurbita maxima] >KAG6573912.1 Required for excision 1-B domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 338.6 bits (867), Expect = 3.8e-89 Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0
BLAST of Lsi04G001920 vs. TAIR 10
Match: AT5G04910.1 (unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). ) HSP 1 Score: 242.3 bits (617), Expect = 3.5e-64 Identity = 131/217 (60.37%), Postives = 160/217 (73.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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