Lsi04G001920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA repair REX1-B protein
Location	chr04: 2036123 .. 2039307 (+)
RNA-Seq Expression	Lsi04G001920
Synteny	Lsi04G001920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGTATCATTGATTTTGGTTTTCGTTTTCGTTTGTAATCTTGATCGTTGTTTTCGAAAACAAATGAAGAATCCGATGGTTAAAGTTGTATGTGTACGACTTCTGTTATAGTGTTCTTTCATACCGTAGGATTTTGTCCTAAACCACGTTTAAGGTACATTTTCCTTCATAACGATTCCAAACAGATCGATGATTAGAAAATCCTAAACGAATTTGTGTTAGTCTTAGTCCTAAACGAGCTTAGTGACGAAGTTTCGAGTGTGTTTTTGCTATTTATTTATACAAGTCGGATGGAATCTGTGAAGTCTTTTTCATTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTTCGTTACACAATTTTCACAGCATGTCGTTTAAGCGTATTCTTCATTTCTTCTTTGAGCTTCCTTGTGAGATTTTCCCTTTTGGACTCTATTTTGTTGTAGGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATGTATACTTTTAAACTTAAAAACCATGCCGTGCTTTCAATCAATCCAACTAGTCAGTTAAACTTGTAATTCTAAAAATTAGTAGGATTGATCAGTATATCATATATGCTTTGGAAAACAAGCCATAAATTTTTATCACATTAAGACAATCCTCAAGGCGTAAGGTACAAAAGACCTTTGAAACATTGTTCAGATAATCAGATTAGAAACTCTGTCCATTGGTAAATCTGGATTATGTATAGCATCGTTCCAAAGTCCAAGCTCTCCTTAATTCTAGCGAACTGGAATCAGAGGACCATTTGGTTCACATTTTCTCAGGGATTCTAGATTTTGTTTTAAGTATCATTTCTTTTCTGACAGTAGAAAGTTTTTTCTTCTGTATGCTAATCGAAATATTGATAACCCTTCCCATCAATGGATGTATGGACATATCGACATGTTGACTGATGTATAAACCTTGATGCTTATGCTTGATTCCTAGTCTCTCTCTTTTATTTGTTGCTTCCTTTGACTGTGGTCTGTCATGTCTTAACAAGAAAGTTACCTCAAGTGGATTTGAGTCAATATCCTTCAATGATGCACCGGTTTTCCTTTAACTTTATCTTATTCAACGAGTTTTGGGCACGAGCAAAAACAATTTTCTTCTGACCTTTTTATCAAAGAATTCTAGCCAGAATAATGCAGGGTATAGGAGATGAGGTAATGGCATTGGTGGAAAGGAATTTTGACCATCTGAACTACATAGAGCCAACTTTTTTTATATTACAATGAGCTGCATTTATAGAAGTTAATCGGAGGAACGAAATGATTTTACTACTGTTATCCACTACTCATCAGACGATCATTTTCTGTTTTTAAAAAGCAGCAGCAGCGAACTTTTCAAGATGTGGAATGGCACCTTGATTTCCCTTTTTTTCCTTTTTGCCGTTTAACTGCAGAACTCAATATTGTAAATTTCACTTAACTACCCAAGATCTTCAGTAGTGGTATGTAGTTATCTTTGAATGCTTGCACACTTGTCTAATGCCATAAGTTCGGATGCTAAAAGTTGGAACAAGAAATCTTGGCAATGAATGTGCTTTTGTTGGACATAAAGTTCAGTAGTTGAGTGATCTTGGATTATCTTTACCTAACTATTATTTCTTTAAAGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATATATGATATTTAGATTATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAGGAAGGAATTGACAAAACAAATCGAAGTCTAATTCACTTCATTTCATCTCTTAAAAGGTCATTTTCCAGAGTTGCTACACAGAATAATTTTTTATTTGACTGACAATCATATAAACCGAAAGATATTTCTTGTCATTTGCATGCATGCTCCTCCAAAAGCACACATTAACGTAGGAGTAAGAATTGATTGGTAGCATACTTAATCAAACGGATATTTTTTTCGTCTAATATAAAGATCTCATACTACTTCATAAACTGAAAATCCCTACAAAAATACCGTTTAATTTACCAGTGTTGTTTGAATAGCCTGAGTTTGTTCTTGAAAGCTTTGCTTGATATATCCACCTTTTTTGAGATATATCAACTAAACTCTCAATTTTTAGCCCCAATTTTTGTCTCTAGATTGGGAAATAAAGCAGGGACAGTGATTGGGAGAAGGTCAAGAACACTCTTTTCAAGAGTCTTGTACTGCATACGGTAATCCTATATTAGAAACAAATTTGTAAGATATGTAAAGCAAATCGTAACTAGAATTAATGTTTATATGCTCCCTCACTATTGAACTTTATTTTATTTAAACTTAAATCAGGAGTCGAGGAATTGAAGCTCACGCAGTCATCTCGAATGGCCAAATTTTCTGATCCTACAAAAGTACTCAATTCTTTCCCTTCCTAATTTGACACATCTACTGATAAATTATTTTACGTCTATTTTAGGAGGACACGTATGGGAGTGATTCTTAAATGGTTAAAATTATTTTTGTCATTTTCAAAATCATTCTGAAACATGTTTTTAATCATTCAAAACCAATTTCGATGATATGATAATCACATTTAAAAGTGTAAAATTAATTTTGAGTGACTAAAGGTATGTTTTGAAATAATTAAGTGCATATTTGGG

mRNA sequence

ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATATATGATATTTAGATTATCTTGCTCTGCAATTGAATTGCTTACTGAAATACCTATAAATGAAGCAAATCAGGAAGGAATTGACAAAACAAATCGAAGTCTAATTCACTTCATTTCATCTCTTAAAAGGTCATTTTCCAGAGTTGCTACACAGAATAATTTTTTATTTGACTGACAATCATATAAACCGAAAGATATTTCTTGTCATTTGCATGCATGCTCCTCCAAAAGCACACATTAACGTAGGAGTAAGAATTGATTGGTAGCATACTTAATCAAACGGATATTTTTTTCGTCTAATATAAAGATCTCATACTACTTCATAAACTGAAAATCCCTACAAAAATACCGTTTAATTTACCAGTGTTGTTTGAATAGCCTGAGTTTGTTCTTGAAAGCTTTGCTTGATATATCCACCTTTTTTGAGATATATCAACTAAACTCTCAATTTTTAGCCCCAATTTTTGTCTCTAGATTGGGAAATAAAGCAGGGACAGTGATTGGGAGAAGGTCAAGAACACTCTTTTCAAGAGTCTTGTACTGCATACGGAGTCGAGGAATTGAAGCTCACGCAGTCATCTCGAATGGCCAAATTTTCTGATCCTACAAAAGTACTCAATTCTTTCCCTTCCTAATTTGACACATCTACTGATAAATTATTTTACGTCTATTTTAGGAGGACACGTATGGGAGTGATTCTTAAATGGTTAAAATTATTTTTGTCATTTTCAAAATCATTCTGAAACATGTTTTTAATCATTCAAAACCAATTTCGATGATATGATAATCACATTTAAAAGTGTAAAATTAATTTTGAGTGACTAAAGGTATGTTTTGAAATAATTAAGTGCATATTTGGG

Coding sequence (CDS)

ATGGAAGATTTTGAGAAGAAGCTCTCTCTGGATGAACAAATGGAGGAAGACCAAAGAACCGATGTCACCGATTCCTCCAACACTCTCAGTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCGGAAGCTTATGCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGGTATCTTATCAACAGCTTTGCAGTGAGATCACTATGGAATTCAGTAATTGCTCCAAACAAGTCATTGCCATTGAATCGAACTTCCGGAGTCCAGATCATAACAGGCTCGACTTAGCCAACCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATCTCAAATTCAGTTATTGAAGAAGGCTGGCCACCCATCAGAGCGCTTGGTGAGCCACGAGAATTGCAAATTCAATGCACCTCGAGAGCACGAGTGTATGCATGTCCATGAGATAACTGAGGCTTCTGGTACTGAGGAAGCAGAAGCGGATGCCGATTATGACAATGCTCTAAAGGAATCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAATTGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAA

Protein sequence

MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIKGVQDAVTTIIEHMEEVRYEIAALEDK

Homology

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BLAST of Lsi04G001920 vs. ExPASy Swiss-Prot
Match: Q17Q97 (Required for excision 1-B domain-containing protein OS=Bos taurus OX=9913 GN=REX1BD PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 30/97 (30.93%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 31  LLRKFLEIQQRRAEAYAKLKRGFDEYMTSGREVS---YQQLCSEITMEFSNCSKQVIAIE 90
           L+++  ++Q  RA+A+ +L+ G  +Y++SG       Y+    E+T  F+  S++V+A+E
Sbjct: 42  LVQRIHQLQAERAQAFRRLEEGHRQYLSSGPPYDFPRYRSTVHEVTQVFAAASREVLAVE 101

Query: 91  SNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQIQLL 125
           +    P    L LA+ +RS+Q+ E+ +L  V+ +QL+
Sbjct: 102 AELAGPRAQPL-LASHVRSLQQLEETRLTTVALLQLM 137

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BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A0A0KUN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.2e-93
Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED++   TDSSNTLSLLR+FLEIQQRRAEAY+KLKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDRK---TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCSEIT EFSNCSKQVI IESNFRS DHNRL+LAN LRSVQEQEKQKLHL +Q
Sbjct: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSERLVSHENC+FNAPREHEC+HVHEITEASGTEEAEADA+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQDAVTTI EHMEEVRYEI ALEDK
Sbjct: 181 GVQDAVTTINEHMEEVRYEIEALEDK 203

[Close]

BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A5D3CFT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001610 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92
Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED+    TDSSNTLSLLR+FLEIQQRRAEAY+KLKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDRG---TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCSEIT EFSNCSKQVI IESNFR+ DHNRL+LANLLRSVQEQEKQKLHL +Q
Sbjct: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSERLVSHENC+ NAPREHEC+HVHEITEASGTEEAEADA+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 181 GVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A1S3BGI9 (uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.9e-92
Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED+    TDSSNTLSLLR+FLEIQQRRAEAY+KLKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDRG---TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCSEIT EFSNCSKQVI IESNFR+ DHNRL+LANLLRSVQEQEKQKLHL +Q
Sbjct: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSERLVSHENC+ NAPREHEC+HVHEITEASGTEEAEADA+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 181 GVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A6J1HYI6 (uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467775 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRT--DVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED RT  D + SSNTL+LLRKFLEIQQRRAEAYA+LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLV 120
           SGRE+SYQQLC EIT EFSNCSKQVI IESNF SPDH+R++LA+LLRSVQEQEKQKLHL 
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 SQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKES 180
           +QIQLLKKAG PSERLVSHENC+F  PREHEC+HVHEITEASGTEEAEADA+YDNALKE+
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTIIEHMEEVRYEIAALEDK 207
           IKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Lsi04G001920 vs. ExPASy TrEMBL
Match: A0A6J1G147 (uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449729 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRT--DVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED RT  D + SSNTL+LLRKFLEIQQRRAEAYA+LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLV 120
           SGRE+SYQQLC EIT EFSNCSKQVI IESNF SPDH+R++LA+LLRSVQEQEKQKLHL 
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 SQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKES 180
           +QIQLLKKAG PSERLVSHENC+F  PREHEC+HVHEITEASGTEEAEADA+YDNALKE+
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTIIEHMEEVRYEIAALEDK 207
           IKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_038892275.1 (uncharacterized protein LOC120081463 [Benincasa hispida])

HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93
Identity = 181/206 (87.86%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEEDQRTD +DSSNTLSLLR+FLEIQQRRAEAYA+LKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDQRTDASDSSNTLSLLREFLEIQQRRAEAYARLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCS+IT EFSNCSKQVI IESNFRS DHNRL+LANLLRSVQE+EKQKLHL +Q
Sbjct: 61  REISYQQLCSQITTEFSNCSKQVIDIESNFRSSDHNRLELANLLRSVQEKEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSER+VSHENC+FNAPREHEC+HVHE+T ASGTEEAEA+A+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERVVSHENCRFNAPREHECVHVHEMTGASGTEEAEAEAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQD VTTI E+MEEVRYEIAALEDK
Sbjct: 181 GVQDTVTTINEYMEEVRYEIAALEDK 206

[Close]

BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_004135056.1 (uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical protein Csa_009032 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED++   TDSSNTLSLLR+FLEIQQRRAEAY+KLKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDRK---TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCSEIT EFSNCSKQVI IESNFRS DHNRL+LAN LRSVQEQEKQKLHL +Q
Sbjct: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSERLVSHENC+FNAPREHEC+HVHEITEASGTEEAEADA+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQDAVTTI EHMEEVRYEI ALEDK
Sbjct: 181 GVQDAVTTINEHMEEVRYEIEALEDK 203

[Close]

BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_008446706.1 (PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 uncharacterized protein E6C27_scaffold65G006350 [Cucumis melo var. makuwa] >TYK09169.1 uncharacterized protein E5676_scaffold475G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 182/206 (88.35%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRTDVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED+    TDSSNTLSLLR+FLEIQQRRAEAY+KLKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDRG---TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60

Query: 61  REVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLVSQ 120
           RE+SYQQLCSEIT EFSNCSKQVI IESNFR+ DHNRL+LANLLRSVQEQEKQKLHL +Q
Sbjct: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQ 120

Query: 121 IQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKESIK 180
           IQLLKKAG PSERLVSHENC+ NAPREHEC+HVHEITEASGTEEAEADA+YDNALKE+IK
Sbjct: 121 IQLLKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180

Query: 181 GVQDAVTTIIEHMEEVRYEIAALEDK 207
           GVQDAVTTI +HMEEVRYEI ALEDK
Sbjct: 181 GVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_023541138.1 (uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.5 bits (872), Expect = 1.0e-89
Identity = 179/208 (86.06%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRT--DVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED RT  D + SSNTL+LLRKFLEIQQRRAEAYA+LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLV 120
           SGRE+SYQQLC EIT EFSNCSKQVI IESNF SPDH+R++LA+LLRSVQEQEKQKLHL 
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 SQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKES 180
           +QIQLLKKAG PSERLVSHENC+F  PREHEC+HVHEITEASGTEEAEADA+YDNALKE+
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECLHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTIIEHMEEVRYEIAALEDK 207
           IKGVQDAVTTI EHMEEVRYEIAALEDK
Sbjct: 181 IKGVQDAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Lsi04G001920 vs. NCBI nr
Match: XP_022945518.1 (uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 uncharacterized protein C19orf60 homolog [Cucurbita maxima] >KAG6573912.1 Required for excision 1-B domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 338.6 bits (867), Expect = 3.8e-89
Identity = 178/208 (85.58%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MEDFEKKLSLDEQMEEDQRT--DVTDSSNTLSLLRKFLEIQQRRAEAYAKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED RT  D + SSNTL+LLRKFLEIQQRRAEAYA+LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSVQEQEKQKLHLV 120
           SGRE+SYQQLC EIT EFSNCSKQVI IESNF SPDH+R++LA+LLRSVQEQEKQKLHL 
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 SQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEADADYDNALKES 180
           +QIQLLKKAG PSERLVSHENC+F  PREHEC+HVHEITEASGTEEAEADA+YDNALKE+
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTIIEHMEEVRYEIAALEDK 207
           IKGVQ+AVTTI EHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of Lsi04G001920 vs. TAIR 10
Match: AT5G04910.1 (unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 242.3 bits (617), Expect = 3.5e-64
Identity = 131/217 (60.37%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 2   EDFEKKLSLDEQMEEDQRTDVTDS--------------SNTLSLLRKFLEIQQRRAEAYA 61
           EDF+KK+SL + +  D   +   S              S TL LLR  LEIQQRRA+AYA
Sbjct: 4   EDFQKKVSLRDSLSGDIENECGGSGVGSTSSTVGSGVASQTLVLLRSLLEIQQRRAQAYA 63

Query: 62  KLKRGFDEYMTSGREVSYQQLCSEITMEFSNCSKQVIAIESNFRSPDHNRLDLANLLRSV 121
            LK GF EY+ SG E  YQ+LCSEIT EFS CSKQV  +ES F +P+  R DLA LL  +
Sbjct: 64  NLKSGFSEYVESGAEALYQKLCSEITTEFSECSKQVREMESLFLNPEVGRADLAKLLSDI 123

Query: 122 QEQEKQKLHLVSQIQLLKKAGHPSERLVSHENCKFNAPREHECMHVHEITEASGTEEAEA 181
           Q QEKQKLHL   IQ+LKKAG PSER+++HENCKF  P +HEC+H+HEITEA+GTEEAEA
Sbjct: 124 QTQEKQKLHLTVTIQVLKKAGRPSERMLTHENCKFKKPMQHECVHLHEITEAAGTEEAEA 183

Query: 182 DADYDNALKESIKGVQDAVTTIIEHMEEVRYEIAALE 205
           DA++DNALKE+I+GVQDAVT+I E++E++RYEI ALE
Sbjct: 184 DAEFDNALKEAIRGVQDAVTSINEYLEDIRYEIEALE 220

The following BLAST results are available for this feature:

BLAST of Lsi04G001920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q17Q97	2.7e-05	30.93	Required for excision 1-B domain-containing protein OS=Bos taurus OX=9913 GN=REX...	[more]

BLAST of Lsi04G001920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN3	6.2e-93	89.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1	[more]
A0A5D3CFT2	8.9e-92	88.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BGI9	8.9e-92	88.35	uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=...	[more]
A0A6J1HYI6	1.9e-89	85.58	uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G147	1.9e-89	85.58	uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lsi04G001920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892275.1	3.4e-93	87.86	uncharacterized protein LOC120081463 [Benincasa hispida]	[more]
XP_004135056.1	1.3e-92	89.32	uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical ...	[more]
XP_008446706.1	1.8e-91	88.35	PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 unc...	[more]
XP_023541138.1	1.0e-89	86.06	uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022945518.1	3.8e-89	85.58	uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 un...	[more]

BLAST of Lsi04G001920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04910.1	3.5e-64	60.37	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039491	Required for excision 1-B domain-containing protein	PFAM	PF14966	DNA_repr_REX1B	coord: 31..125 e-value: 1.6E-32 score: 111.9
IPR039491	Required for excision 1-B domain-containing protein	PANTHER	PTHR28309	REQUIRED FOR EXCISION 1-B DOMAIN-CONTAINING PROTEIN	coord: 23..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001920.1	Lsi04G001920.1	mRNA