Lsi04G001170 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYECLQPLGHLSYRMIMA Homology
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2) HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q7YJX6 (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A7U1GFV1 (Photosystem II 44 kDa protein OS=Gymnotheca chinensis OX=126643 GN=psbC PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36 Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A290DMH9 (Photosystem II CP43 reaction center protein OS=Xanthorrhoea preissii OX=470286 GN=psbC PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36 Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A1S6KIY4 (Photosystem II CP43 reaction center protein (Fragment) OS=Poliothyrsis sinensis OX=124846 GN=psbC PE=3 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35 Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A2P1CRS8 (Photosystem II CP43 reaction center protein OS=Poliothyrsis sinensis OX=124846 GN=psbC PE=3 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35 Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A5D2BJX6 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G144700v1 PE=3 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_010119021.1 (photosystem II 44 kDa protein [Gymnotheca chinensis] >QQY97904.1 photosystem II 44 kDa protein [Gymnotheca chinensis]) HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35 Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_009432384.1 (photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii] >ATB18639.1 photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii]) HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35 Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Lsi04G001170 vs. NCBI nr
Match: AQT03138.1 (photosystem II CP43-chlorophyll, partial [Poliothyrsis sinensis]) HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35 Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_009474053.1 (photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis] >AVK40718.1 photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis]) HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35 Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of Lsi04G001170 vs. NCBI nr
Match: TYG57477.1 (hypothetical protein ES288_D08G144700v1 [Gossypium darwinii]) HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35 Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0
BLAST of Lsi04G001170 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C ) HSP 1 Score: 153.7 bits (387), Expect = 7.8e-38 Identity = 74/83 (89.16%), Postives = 74/83 (89.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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