Lsi04G001170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G001170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II CP43 reaction center protein
Locationchr04: 1280317 .. 1280613 (+)
RNA-Seq ExpressionLsi04G001170
SyntenyLsi04G001170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG

mRNA sequence

ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG

Coding sequence (CDS)

ATGAAAACCTTATATTCCCTGAGGAGATTCTACCCCGTGGAAATGCTCTTTAATGGAACGTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCAGGTTCGCTTGGTGGGTCGGGAATGTCCGACTTATCAATTTATCTAGTAAACTACTCGAGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGATCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGTCCATGTATGAATGCCTTCAACCACTCGGCCATCTCTCCTACAGAATGATTATGGCCTAG

Protein sequence

MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLIVFWIGAMNLFEVAHFVPEKSMYECLQPLGHLSYRMIMA
Homology
BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy Swiss-Prot
Match: Q7YJX6 (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-38
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A7U1GFV1 (Photosystem II 44 kDa protein OS=Gymnotheca chinensis OX=126643 GN=psbC PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A290DMH9 (Photosystem II CP43 reaction center protein OS=Xanthorrhoea preissii OX=470286 GN=psbC PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A1S6KIY4 (Photosystem II CP43 reaction center protein (Fragment) OS=Poliothyrsis sinensis OX=124846 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS 93
          VFW GAMNLFEVAHFVPEK MYE  L  L HLS
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLS 93

BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A2P1CRS8 (Photosystem II CP43 reaction center protein OS=Poliothyrsis sinensis OX=124846 GN=psbC PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS 93
          VFW GAMNLFEVAHFVPEK MYE  L  L HLS
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLS 93

BLAST of Lsi04G001170 vs. ExPASy TrEMBL
Match: A0A5D2BJX6 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G144700v1 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLRAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_010119021.1 (photosystem II 44 kDa protein [Gymnotheca chinensis] >QQY97904.1 photosystem II 44 kDa protein [Gymnotheca chinensis])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_009432384.1 (photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii] >ATB18639.1 photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVEMLFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. NCBI nr
Match: AQT03138.1 (photosystem II CP43-chlorophyll, partial [Poliothyrsis sinensis])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS 93
          VFW GAMNLFEVAHFVPEK MYE  L  L HLS
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLS 93

BLAST of Lsi04G001170 vs. NCBI nr
Match: YP_009474053.1 (photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis] >AVK40718.1 photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE-CLQPLGHLS 93
          VFW GAMNLFEVAHFVPEK MYE  L  L HLS
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLS 93

BLAST of Lsi04G001170 vs. NCBI nr
Match: TYG57477.1 (hypothetical protein ES288_D08G144700v1 [Gossypium darwinii])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 75/83 (90.36%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFYPVE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLRAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

BLAST of Lsi04G001170 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 153.7 bits (387), Expect = 7.8e-38
Identity = 74/83 (89.16%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1  MKTLYSLRRFYPVEMLFNGTLALAGRDQETTRFAWWVGNVRLINLSSKLLEAHVAHAGLI 60
          MKTLYSLRRFY VE LFNGTLALAGRDQETT FAWW GN RLINLS KLL AHVAHAGLI
Sbjct: 1  MKTLYSLRRFYHVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLI 60

Query: 61 VFWIGAMNLFEVAHFVPEKSMYE 84
          VFW GAMNLFEVAHFVPEK MYE
Sbjct: 61 VFWAGAMNLFEVAHFVPEKPMYE 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A9LYI19.9e-3890.36Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps... [more]
Q3V5389.9e-3890.36Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE... [more]
Q70Y079.9e-3890.36Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=... [more]
A6MM329.9e-3890.36Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps... [more]
Q7YJX69.9e-3890.36Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus... [more]
Match NameE-valueIdentityDescription
A0A7U1GFV17.3e-3691.57Photosystem II 44 kDa protein OS=Gymnotheca chinensis OX=126643 GN=psbC PE=4 SV=... [more]
A0A290DMH97.3e-3691.57Photosystem II CP43 reaction center protein OS=Xanthorrhoea preissii OX=470286 G... [more]
A0A1S6KIY42.1e-3586.02Photosystem II CP43 reaction center protein (Fragment) OS=Poliothyrsis sinensis ... [more]
A0A2P1CRS82.1e-3586.02Photosystem II CP43 reaction center protein OS=Poliothyrsis sinensis OX=124846 G... [more]
A0A5D2BJX62.1e-3590.36Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G144700v1 PE=... [more]
Match NameE-valueIdentityDescription
YP_010119021.11.5e-3591.57photosystem II 44 kDa protein [Gymnotheca chinensis] >QQY97904.1 photosystem II ... [more]
YP_009432384.11.5e-3591.57photosystem II CP43 chlorophyll apoprotein [Xanthorrhoea preissii] >ATB18639.1 p... [more]
AQT03138.14.4e-3586.02photosystem II CP43-chlorophyll, partial [Poliothyrsis sinensis][more]
YP_009474053.14.4e-3586.02photosystem II CP43 chlorophyll apoprotein [Poliothyrsis sinensis] >AVK40718.1 p... [more]
TYG57477.14.4e-3590.36hypothetical protein ES288_D08G144700v1 [Gossypium darwinii][more]
Match NameE-valueIdentityDescription
ATCG00280.17.8e-3889.16photosystem II reaction center protein C [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 33..83
e-value: 5.9E-18
score: 64.8
IPR000932Photosystem antenna protein-likePANTHERPTHR33180PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 21..85
NoneNo IPR availablePANTHERPTHR33180:SF16PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 21..85
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 28..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G001170.1Lsi04G001170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding