Lsi04G001010 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTGCTTTTCTTTCTCTTCTTTGCAAATCCTCTATATGTGTGTGTAATTTCTCTTCATAATATTCTATTCCTTTTGCTTTCCAACCATATGGCCCTCCTCCCCTCCCCTTTATGATATAGGACAACTCAATTTAAGACAATGGAAGATGACCTATCCATTAAAAAGTAAATACTACTCATGACTTTTCTAATATATATATATATATATATATAGATTGTGTGTGGTGGACATATATGTTAAGTATCTTGCATCATACAGATGAAAAGATTTCGTAATCTTTATAAGATACATGAGTTACTGCTCTTATTGTCAATTGATTTTGAGATGAAACCACATGTGTGTGTACCTGATACCAGTATTAGAGCCCATGAAGTTCAAATGGGTATTTGGTTCGAAATCTAGATCGAATCCAAGGATTGTAAACTTAATGAGGTATTATCCCTTGAGGAAGCATGTCGAGGATCTCACATCGAAAAAATTGAAAATAATCTTTATAAAATAACATGAGTTACTCCTCTCAATGCTAATTAATTTTGAGATTGAACCTCATGTTTATAAAATAATAATATGAAAATTTAGAGTTGGAACAAGAAAGCAACTTTTTGATATATATATATATATATAAAAAATGAAGAGCACAAGTCATTCAAAATTTTGTGTCTATTAAATCCCAAAATTATAAATCTTAGGTCTTTAAACTTTCAATTTTGTATTTAATAAGTTTATGATATAATCAATATCTTTAAAAAAATTAATTGATAATCGATTTATTAGATATGAAATCAAATTCTATTTAAAAAAAGAGAGAGAGGTTGAATTTTGTGACTAAACGAACACCTTGAATACCCTAAAATTTCTAAAAAATGACAAATAAGTTAAGAACTCATTAAATACAAAATTAAAAAAAAAAATCTATTAGACACAAAATTGAAAGTCTAAAAGTCTAATAGATACTTCTAAAAGTTCAAAAACTTAACATAATATTAAAAAGTTAAAAATCAATCAATACTTTTTAAAGTTCATGAACGTTTTAGACAAATTGAAAGTTTATTGACCAAATAAATACAAACTCGAAATTGTAGAGACTAAACTTGTAATTTAACCAATTATATTTTTTTAAATCTTTTAAAATATTTAATTATTATTATTATTATTTTGCAGGTATAATGCTGGTCAAGGAATTGTATATCCAGGATTTAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGCAATGGTAATGATGACTACTACGGCATGATATTTAAAGCGGCTGGTTATAGTGTATTGCCGATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCACAAATTATAGTGGTCTATTCGCATTATAG ATGGGATTTAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGCAATGGTAATGATGACTACTACGGCATGATATTTAAAGCGGCTGGTTATAGTGTATTGCCGATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCACAAATTATAGTGGTCTATTCGCATTATAG ATGGGATTTAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGCAATGGTAATGATGACTACTACGGCATGATATTTAAAGCGGCTGGTTATAGTGTATTGCCGATATTGCCCTCCATAAACTTATGTACTCAAATTCTAATACTTTTGTACATAGTCACAAATTATAGTGGTCTATTCGCATTATAG MGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAAGYSVLPILPSINLCTQILILLYIVTNYSGLFAL Homology
BLAST of Lsi04G001010 vs. ExPASy TrEMBL
Match: A0A1S3BGT0 (Pectate lyase OS=Cucumis melo OX=3656 GN=LOC103489433 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20 Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0
BLAST of Lsi04G001010 vs. ExPASy TrEMBL
Match: A0A0A0KRG9 (Pectate lyase OS=Cucumis sativus OX=3659 GN=Csa_5G622520 PE=3 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19 Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0
BLAST of Lsi04G001010 vs. ExPASy TrEMBL
Match: A0A6J1CBN1 (Pectate lyase OS=Momordica charantia OX=3673 GN=LOC111010036 PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14 Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0
BLAST of Lsi04G001010 vs. ExPASy TrEMBL
Match: A0A6J1GWH9 (Pectate lyase OS=Cucurbita moschata OX=3662 GN=LOC111458162 PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.0e-13 Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0
BLAST of Lsi04G001010 vs. ExPASy TrEMBL
Match: A0A6J1ISI7 (Pectate lyase OS=Cucurbita maxima OX=3661 GN=LOC111478161 PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12 Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Lsi04G001010 vs. NCBI nr
Match: XP_038893100.1 (probable pectate lyase 18 isoform X1 [Benincasa hispida] >XP_038893101.1 probable pectate lyase 18 isoform X1 [Benincasa hispida]) HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28 Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0
BLAST of Lsi04G001010 vs. NCBI nr
Match: XP_008446817.1 (PREDICTED: probable pectate lyase 18 [Cucumis melo]) HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20 Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0
BLAST of Lsi04G001010 vs. NCBI nr
Match: XP_011655861.1 (probable pectate lyase 18 [Cucumis sativus] >KGN52235.1 hypothetical protein Csa_008983 [Cucumis sativus]) HSP 1 Score: 104.8 bits (260), Expect = 3.6e-19 Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0
BLAST of Lsi04G001010 vs. NCBI nr
Match: XP_022138994.1 (probable pectate lyase 18 [Momordica charantia]) HSP 1 Score: 87.4 bits (215), Expect = 5.9e-14 Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0
BLAST of Lsi04G001010 vs. NCBI nr
Match: XP_022956421.1 (probable pectate lyase 18 [Cucurbita moschata]) HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12 Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|