Lsi04G000700 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATGAACTGAAACAGTTCTTGAGGTAAAAGATGAGCAGAGTGTAGACAGTATATTATTTTTGGCGATCTTCATCATACTGGGAAGCCATGGCCGGCCTCCATCTGCCCTCTAATGCTTCGGTGAAGAACGGCCTTCCTCCCCAAGAACTTCTCGATGATCTTTGCAGGTACGCGCTGTTTTTTTTCTCTCTATTTGATTTACTGGTTTTGCTGCGAGTTATAGGTCCGTTAGACGTGGAGATCTTAGGGTTTTTTCAGTTGAATTTGTATACGAGCTAGTTTATTCTGATTATCTTTCTTTTGATTTTGCCACCTGATTGTCGTATATTGCTTTTGCAAAACAAACACTGTTAATAGAGACTACGAGTTTGGCATCTCGTTGAGGAAAAGAACATGATGGGTAAACATAGGACCATTTCCTGAAGCAAGTGATTATAATTCTTCCAAAAGGGCTTGTCCTTGAAAGGGTTTTTTTTTCTCCCTCTTTAGGTAGGTGTCTGGGCCAACTTGAGCGGCCCTTGTCCTGACCCTACAACAAGCGAAAACATACACTCTTAAACGGAATTTGGCGGCCTATCTTCACTGAAATTAGTGAATTGATAGTTTAGATTTCATTTAATAATGATTTTGTATTTAGTTGTATGTTTTGAAGTTTATGTTTGTTTCTGGTCAATTTCTTTACTAGCCCTTACCCTTCTTAAAGAAACATTCCAAAAACGAAAATAGGTTTTAAAATGTACTTTTTATAGTTTTCGAAACTTGCTTGGACTAAAACAAAGAAACTGCGGAAGTAGTTTTGTAAGTTAAATTTAAAAATAAAAAATGAAAAACCAGATAGATACAAACAGAGCCTTAATTGTCAACTATTAATGTTGGATGTGAAAAATTATGCTGTCGTTAGTTAGAATTCAGATGGATCTTTTTTTCGGTTGAAGATGCTATATTAGTCTTGTTTGTCACCTTGCAGAGTTATTATTTTCAATCAACCAACACCCTTTTCTAGAAATCAGAAAGTTAAATGAAATATACTGTCCCCCTTTCTTCATCTTTGCTTTTAGTCATGCTTGGTGGGAGTATGGTTGGTCAAATTAAGCCACTCGTGTTGAGGTGTCATTTTGGTGGCTTCCCTTTTGGGGGGGATTATTGTTGTTATTTTATTGCAATATTGGTTGGAATGGAATAGCTCCTAAGTTCTCATCTATCTATATCATTTTCTTCTTGATATGCAGCCGATTTGTTTTAAATGTGCCAAAGGAAGATCTACAATCATTTGAGAGGATTTTGTTTCTAGTTGAATACGCACATTGGTTCTACGAAGACAACTCGGTAGAAAATAATCCTTCATTGAAGTCCTTCAACTTGAAGGAGTTCACTTCGTTGTGTATCCTAAGCATTATGTAACCCGTTACCTTAATAATGTGCTTGGATGTTGTTTTCATTGTTTTGTTTCTATGGCAAATAAATGCAACTCTATTTACCTTTTTTCTTTTTTCTTTTTGCCCGTGAGCAACTTGATTATACCATTGCTTTCAGCTAGTAGACCATCACCATCTCAATTTGTGGTAACCTGTTTATGCACGCACACATACATAACATGTGTTCGAGTTTGTCTGTTTGCCCACCCGTACTTTCAGATATAAAAAGCCGAGATTATGCCATCTCTGTCTTCCTTAATTTTCTGCAGTATTTAACAGTTGTGACGTTTTGAAACCATATGTGCCCCACATAGATGACATATTTAAGGATTTCACTTCCTATAAGCTTAGAGTTCCTGTCACTGGGGGAATTATTTTGGATGAGACCTTTGAAAGGGTAAGTGTTGGTCTGTAAAAGGTCCCCCCCGCCCCATTAATACTGTTATTGATTTATTTATATTAATTGTTGAAGTAGTTTTTTTCCGTAAATGCAAGGAGTACTTACACTATTTTTGTGATTCCTTTTCTTTCTGCAACCAAACAGTGCTTACTAGTGAAGGGATGGAAGGGGTCAAGCTGGAGTTTTCCTCGTGGAAAAAAGAGCAAGGATGAAGAAGATCATGCTTGTGCCATTAGAGAAGTAATTTTTCTTTTTCTAAACTTGGCCTTTGATGGCAATAATTTAATATTTTGTGTTTGAAAATGCCAACTTTTATTGGGAAAAGTGAAAGAATATGAAATGAAATTTCCAAAAAAGAAAAAGGAAAAGAAGCTCACTAGCCCAGTCTAACAAGAGCCAGAAAACAAGAAGATGCCTAACTACAAAGATATATTATAGAAAAGACCTAAACCATGAAAGAGAGGAAAACACTAAAATCCTTTGGTACGACGATTCGAAGGGAAGCATTGAGCCTTGGTAAGGACCAAAATTCCTCCCAAGAACTCACCACAGTTCTTAAAAACTCCCTTATTTCTCTCCCATTAAATATACCATGATCTCACAGAGAAAGTGGCCTGCCAAATTGTCACACCCTATCATGGAAAGGAGGGTGAAATAGCAGCTCATGGACCGTAAATGGCTACTATACCTCCTCCTACGACACAAAGCTTCAGTAGATTAAAGTTTTATGGGCTTGAACTTGATCTTTACCATCTGATATTATTTGTATTAAGCAAAAGAGAGCATCAAAGAGGTTTAATTGTTTCAGGGCTTTAACTGAATTACTTATCTCTGTACCAAATCAAGTTGTTACTTTGCCGCTTATCACCATGGAATATATTTTGCGTTGAGAATGTAGGTTTTGGAGGAAACTGGTTTTGATGTGACAACGTTCCTTATCAAAGAGGATTTTATTGAAGTGATGTTTGGTCAACAGAGAGTGCGGCTGTACATTATAGCTGGGGTGAAAAATGATGCTGCCTTTGCGCCTCTTACTAAGAAAGAGATCAGTGTATGTATTCCTTCTCCGTTTTCCTATCAGTTTAAAGTTGATCCTTTTTATATTTAACACCCTATTCAGTTTAAAACTGTTTCTGCACTCTTTTCTACCTTTTTCATTAATATTTTCGATATTTATACTGCATTAACAATGTGTTGATTGGTATGCCCTTCAAAGTCTGAGAGTTTTAAGTAATCAGTTCCTTTAGTCTTCTTATAGATTTTAAAGGTTGTTTCATTTATGTTCATTCTTCTTAATAGTTTATCCCAAGTGCTTATTATGCTTGATAAGACCTCATACTTATGAAAATTGTGGTCAAAAGAAATTGCACCATTCTCTAATGCTGAAATATGAGTCTTGTGAAGCAAAATGCATAATGGATATGTAATCTGGAAGCAGGAAATTGCGTGGCATCGACTTGACGACCTTCTACCTGTGAGTGATGATGTGATATCTCATGGAATCACTGGGCTCAAGCTTTACATGGTGGCTCCTTTCTTGGAGTGAGCATGATTGTGTAGTTTTCTTGATTTCCTCTGCACGCAATTAGAAATTGGTTTTTGTTTAATGGAATCGACAATTTTGAAATGCAGATCATTGAGGTCATGGATTTTGAAGCATCAGCCGCCTGTGGCTCCTAACTTTGACATGCCTGTGAAAGGTAATCTGTTTGTGACTTAACAAATTCTTTAAAAAGGATTTGGTAACATAAGGAACGTTTCCTAGACATATGAAGAGTGGTTTTATCAAGCAAATTTAACCTTCAAAATCAAAATGGAAAACGAAAACAGTCAAATAAAAATGTCATGAAGAATATCTTAGATGAAAAATTGAAAATAGCGACTCGTTATTATTTGTTTGGATTGAGTATCCTATTATATTAGGTCTTTAGGAAGGATTTCGTAACATGAGGCATAATTTTGTTTAATAACAGTGGGGAACGCATAGGAAAAGATTGGAAACATACATCTTGTAAGAGATCTACTAGAGTGATCTGATACTATTGTTGCCATAGCCACGATATTAACAAGAAAACGACTCAATCGGTGTGACTACATGACCCTTAAGTTACCATCCATGTAAAAGTTATATGCATTATTTCTTTGTTGTATTAGTCCGAGGTCTCAAACACATTTTCTATAATTTGCAGTACACTTAGCCCATTGACTTTCTCGCATTCTTTGGCAATGATCTCTATTAATGCAGCTATAAACTTTTGCTTTCCACTCAGGAGTCACCATGTGGAAGGTGAAGAATAGCTTGATGAGCAATAGCTCGATCTTTTTCGACAGCCAGCCGATTAAATTGGATTCTGATCCTGGAAGAAGCCTCAGAAACTTCAAATTCGATACAGCCTCTATCATGCAGGCTATGGAAAGTGCTTTTACTGCATGAATTTCAACAAAAGCCTTAGAATGCCTATTGTACAACGGTTGGTAGCTCGGTTTCACGTTTTTTTTAAAAAAAAAAACTTATATAGTACATTTAGGTAATTTTTGTGCATATTTGTCTGATTTTGTTCTTGATTTTAAATGTAGATCATGTACAGACCCGTTTAGCCATTACTTAGCTGGTTATTAGTTGTATAGAGAAATAAACATTGGAGATGTGGTTCTAACTCATCGCACTGTTGAAATAATAATTATATTGGAGATG AATGAACTGAAACAGTTCTTGAGGTAAAAGATGAGCAGAGTGTAGACAGTATATTATTTTTGGCGATCTTCATCATACTGGGAAGCCATGGCCGGCCTCCATCTGCCCTCTAATGCTTCGGTGAAGAACGGCCTTCCTCCCCAAGAACTTCTCGATGATCTTTGCAGCCGATTTGTTTTAAATGTGCCAAAGGAAGATCTACAATCATTTGAGAGGATTTTGTTTCTAGTTGAATACGCACATTGGTTCTACGAAGACAACTCGGTAGAAAATAATCCTTCATTGAAGTCCTTCAACTTGAAGGAGTTCACTTCGTTGTGTATCCTAAGCATTATTTGTGACGTTTTGAAACCATATGTGCCCCACATAGATGACATATTTAAGGATTTCACTTCCTATAAGCTTAGAGTTCCTGTCACTGGGGGAATTATTTTGGATGAGACCTTTGAAAGGTGCTTACTAGTGAAGGGATGGAAGGGGTCAAGCTGGAGTTTTCCTCGTGGAAAAAAGAGCAAGGATGAAGAAGATCATGCTTGTGCCATTAGAGAAGTTTTGGAGGAAACTGGTTTTGATGTGACAACGTTCCTTATCAAAGAGGATTTTATTGAAGTGATGTTTGGTCAACAGAGAGTGCGGCTGTACATTATAGCTGGGGTGAAAAATGATGCTGCCTTTGCGCCTCTTACTAAGAAAGAGATCAGTGAAATTGCGTGGCATCGACTTGACGACCTTCTACCTGTGAGTGATGATGTGATATCTCATGGAATCACTGGGCTCAAGCTTTACATGGTGGCTCCTTTCTTGGAATCATTGAGGTCATGGATTTTGAAGCATCAGCCGCCTGTGGCTCCTAACTTTGACATGCCTGTGAAAGGAGTCACCATGTGGAAGGTGAAGAATAGCTTGATGAGCAATAGCTCGATCTTTTTCGACAGCCAGCCGATTAAATTGGATTCTGATCCTGGAAGAAGCCTCAGAAACTTCAAATTCGATACAGCCTCTATCATGCAGGCTATGGAAAGTGCTTTTACTGCATGAATTTCAACAAAAGCCTTAGAATGCCTATTGTACAACGATCATGTACAGACCCGTTTAGCCATTACTTAGCTGGTTATTAGTTGTATAGAGAAATAAACATTGGAGATGTGGTTCTAACTCATCGCACTGTTGAAATAATAATTATATTGGAGATG ATGGCCGGCCTCCATCTGCCCTCTAATGCTTCGGTGAAGAACGGCCTTCCTCCCCAAGAACTTCTCGATGATCTTTGCAGCCGATTTGTTTTAAATGTGCCAAAGGAAGATCTACAATCATTTGAGAGGATTTTGTTTCTAGTTGAATACGCACATTGGTTCTACGAAGACAACTCGGTAGAAAATAATCCTTCATTGAAGTCCTTCAACTTGAAGGAGTTCACTTCGTTGTGTATCCTAAGCATTATTTGTGACGTTTTGAAACCATATGTGCCCCACATAGATGACATATTTAAGGATTTCACTTCCTATAAGCTTAGAGTTCCTGTCACTGGGGGAATTATTTTGGATGAGACCTTTGAAAGGTGCTTACTAGTGAAGGGATGGAAGGGGTCAAGCTGGAGTTTTCCTCGTGGAAAAAAGAGCAAGGATGAAGAAGATCATGCTTGTGCCATTAGAGAAGTTTTGGAGGAAACTGGTTTTGATGTGACAACGTTCCTTATCAAAGAGGATTTTATTGAAGTGATGTTTGGTCAACAGAGAGTGCGGCTGTACATTATAGCTGGGGTGAAAAATGATGCTGCCTTTGCGCCTCTTACTAAGAAAGAGATCAGTGAAATTGCGTGGCATCGACTTGACGACCTTCTACCTGTGAGTGATGATGTGATATCTCATGGAATCACTGGGCTCAAGCTTTACATGGTGGCTCCTTTCTTGGAATCATTGAGGTCATGGATTTTGAAGCATCAGCCGCCTGTGGCTCCTAACTTTGACATGCCTGTGAAAGGAGTCACCATGTGGAAGGTGAAGAATAGCTTGATGAGCAATAGCTCGATCTTTTTCGACAGCCAGCCGATTAAATTGGATTCTGATCCTGGAAGAAGCCTCAGAAACTTCAAATTCGATACAGCCTCTATCATGCAGGCTATGGAAAGTGCTTTTACTGCATGA MAGLHLPSNASVKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNSVENNPSLKSFNLKEFTSLCILSIICDVLKPYVPHIDDIFKDFTSYKLRVPVTGGIILDETFERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVTTFLIKEDFIEVMFGQQRVRLYIIAGVKNDAAFAPLTKKEISEIAWHRLDDLLPVSDDVISHGITGLKLYMVAPFLESLRSWILKHQPPVAPNFDMPVKGVTMWKVKNSLMSNSSIFFDSQPIKLDSDPGRSLRNFKFDTASIMQAMESAFTA Homology
BLAST of Lsi04G000700 vs. ExPASy Swiss-Prot
Match: Q8GW31 (mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana OX=3702 GN=DCP2 PE=1 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 1.5e-116 Identity = 204/286 (71.33%), Postives = 237/286 (82.87%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy Swiss-Prot
Match: O13828 (mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dcp2 PE=1 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 4.3e-50 Identity = 106/230 (46.09%), Postives = 139/230 (60.43%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy Swiss-Prot
Match: Q9CYC6 (m7GpppN-mRNA hydrolase OS=Mus musculus OX=10090 GN=Dcp2 PE=1 SV=2) HSP 1 Score: 194.5 bits (493), Expect = 1.8e-48 Identity = 96/233 (41.20%), Postives = 134/233 (57.51%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy Swiss-Prot
Match: Q8IU60 (m7GpppN-mRNA hydrolase OS=Homo sapiens OX=9606 GN=DCP2 PE=1 SV=3) HSP 1 Score: 193.7 bits (491), Expect = 3.1e-48 Identity = 94/233 (40.34%), Postives = 134/233 (57.51%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy Swiss-Prot
Match: Q5REQ8 (m7GpppN-mRNA hydrolase OS=Pongo abelii OX=9601 GN=DCP2 PE=2 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 3.1e-48 Identity = 94/233 (40.34%), Postives = 134/233 (57.51%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy TrEMBL
Match: A0A0A0KWT4 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622860 PE=3 SV=1) HSP 1 Score: 610.9 bits (1574), Expect = 3.0e-171 Identity = 300/316 (94.94%), Postives = 303/316 (95.89%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy TrEMBL
Match: A0A5D3CCQ6 (mRNA-decapping enzyme subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002700 PE=3 SV=1) HSP 1 Score: 609.8 bits (1571), Expect = 6.6e-171 Identity = 299/316 (94.62%), Postives = 303/316 (95.89%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy TrEMBL
Match: A0A1S3BG59 (mRNA-decapping enzyme subunit 2-like OS=Cucumis melo OX=3656 GN=LOC103489466 PE=3 SV=1) HSP 1 Score: 609.8 bits (1571), Expect = 6.6e-171 Identity = 299/316 (94.62%), Postives = 303/316 (95.89%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy TrEMBL
Match: A0A6J1CC63 (mRNA-decapping enzyme subunit 2-like OS=Momordica charantia OX=3673 GN=LOC111010222 PE=3 SV=1) HSP 1 Score: 574.7 bits (1480), Expect = 2.4e-160 Identity = 282/316 (89.24%), Postives = 292/316 (92.41%), Query Frame = 0
BLAST of Lsi04G000700 vs. ExPASy TrEMBL
Match: A0A6J1IK27 (mRNA-decapping enzyme subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111477819 PE=3 SV=1) HSP 1 Score: 573.9 bits (1478), Expect = 4.0e-160 Identity = 283/316 (89.56%), Postives = 291/316 (92.09%), Query Frame = 0
BLAST of Lsi04G000700 vs. NCBI nr
Match: XP_038891420.1 (mRNA-decapping enzyme subunit 2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 622.9 bits (1605), Expect = 1.6e-174 Identity = 304/316 (96.20%), Postives = 306/316 (96.84%), Query Frame = 0
BLAST of Lsi04G000700 vs. NCBI nr
Match: XP_004142410.1 (mRNA-decapping enzyme subunit 2 [Cucumis sativus] >XP_031742317.1 mRNA-decapping enzyme subunit 2 [Cucumis sativus] >KGN52271.1 hypothetical protein Csa_007962 [Cucumis sativus]) HSP 1 Score: 610.9 bits (1574), Expect = 6.1e-171 Identity = 300/316 (94.94%), Postives = 303/316 (95.89%), Query Frame = 0
BLAST of Lsi04G000700 vs. NCBI nr
Match: XP_008446886.1 (PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis melo] >KAA0034722.1 mRNA-decapping enzyme subunit 2-like [Cucumis melo var. makuwa] >TYK09275.1 mRNA-decapping enzyme subunit 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 609.8 bits (1571), Expect = 1.4e-170 Identity = 299/316 (94.62%), Postives = 303/316 (95.89%), Query Frame = 0
BLAST of Lsi04G000700 vs. NCBI nr
Match: XP_038891421.1 (mRNA-decapping enzyme subunit 2-like isoform X2 [Benincasa hispida]) HSP 1 Score: 607.1 bits (1564), Expect = 8.9e-170 Identity = 299/316 (94.62%), Postives = 301/316 (95.25%), Query Frame = 0
BLAST of Lsi04G000700 vs. NCBI nr
Match: XP_022139266.1 (mRNA-decapping enzyme subunit 2-like [Momordica charantia]) HSP 1 Score: 574.7 bits (1480), Expect = 4.9e-160 Identity = 282/316 (89.24%), Postives = 292/316 (92.41%), Query Frame = 0
BLAST of Lsi04G000700 vs. TAIR 10
Match: AT5G13570.1 (decapping 2 ) HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-117 Identity = 204/286 (71.33%), Postives = 237/286 (82.87%), Query Frame = 0
BLAST of Lsi04G000700 vs. TAIR 10
Match: AT5G13570.2 (decapping 2 ) HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-115 Identity = 204/299 (68.23%), Postives = 237/299 (79.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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