Lsi03G003350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G003350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF3245)
Location	chr03: 3981769 .. 3984854 (+)
RNA-Seq Expression	Lsi03G003350
Synteny	Lsi03G003350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTACTTTTCTCAATATTTTCAACTCAATTCTATTTTTGTCATTATTTATTAAAATAACATTATTGAATTGAAGGGTGAAATTACTATTCAAACGTGAGTTTTGATCCTCTATTACCCTTCTTTCTCCATCTCCCTCACATACTCGCCTGATCCCTAATCCTCCGCCGGCAGCAGCTCACCGGCGCTACTCTTCTCCGGCAAGTACGTACTTGTCGAACCAAATCCTGTGACGACGATAGACCGACCGGGAAGGTGGTCGACACCCACGAACACCTCTCAGCAACCCTCTCGCTCCCGGCGCGACATACCAGCGGTAAAATTTTATCAACTCCTTAGGGACTACTACATCGATTCAGTTTATAATTCGGCTCAATTAGTTCTGAAAACACGTATTTCTGTTTATAAATTTCCGATCACTAAGAATTCTAACTCCCTAAAAATTCGTATCTGACCCCTTACTTGAGTGCTCGTGTGTTGTTTGTTCGATTGCTTTATGATTTACTTGCCTAATGAATGTTGAGTTGATAAAATAGCATGCTATAATTTCTGATGAGATTATTTAGGGTTGACATGCTTCTATTGAAGTGTGTATATTGGATTCTTGATATTGAGATTAGGAAAACTCGGTGCGTTTCATGAAGTAATGACTGCTCATTCTAAAATTATGCAGAAATCCTAACAATTTCATTGTGGATTGTCGTGTTTGCAGTATCGCAGTCTTGAAGTTGCAGTAGCAAGCGCAATGAGCAGCAACATGGACAGGCCGCAGAAATTTAGACCTCCCGAAATTATTAAGCTGAATGATGCAGCGAAATTGGTAATCAGTTAGAGGTTCTTTAGTCACTTCGTCATGCCTTTGTTCTCATTCCTGTTCTTCTTTGCTGTTGGGTTTTGCCGCTAGGATTGTTATGCACATTGATTTACATTTACCCCAATGGCTTGCTCAATATGTTGTTAGGTTTTTGTTAGTGGCGATTTAACTGTTTTATGTTCTTTCATCCCACTTTGTCTTTGATTGGATTGCTTTCAACTTTCTATTTCAGTTTTCTGTAGATAGAACGTTAATCTTTTAGACTGGATGAGATAGCATTTTCTAGAGTAAACTGAAACTTAGCTCTCTAAACTAATTGTGTTGCAACATGAATAAAGACAGGTGAGTAAAAGGTTTCACATTTGAGGTCCGTCTTGAAGTGAAATACTGAGCCTTTCTATGAAGAGTTAGAACTTGCATTCCCTATAAAAGGGGAAAATTATATGGAAAGGCAAATTGCAAGGATTGGATGAGAAATTCAACCGACAGAAAAAGGATATCCTCGATCTTGTCCTCAAATGCTTTTCTTCTGTTGCCACAAAATAACCTACAATTTTCCCTATACGGCATAATATCAGTACATTTCTTCTCTGGAAGCATTTCCTCAATTTGTGGTTATGAATCCTAAATGAGGCTAAATCTCTGTTAAGGACAATAGACCTCCACATATCTCCACAATTGTATGTATCCATTTTGGGCATAAAACTTCATGGTTTTGATCTTGTTTCATCCCAAAAGGTCTCGTACTAATGGAGATAGTTGTCCTCACTTATATACCCATGATCATTCCCTTATCTAGCTAATGTGGGAATTCGGTCGTATTCCCAATAATTCTCCCCTAGAACAAATCACCACTGAGCCTCTCCTCAAATAGTCATCTATTTGTTCGAATCTTATCCATGCCAACTCCTTTTCACTGGAGCATACCACCGGTTCGATAGAGGTCAACCACGGACCACACCATTACTATATCTTCCAAGACTCACCACTTTTTGTTCGACACTCAAGGATTCTACCAACATGACTTTGATAGCACTTGTTAAGGACAAGTGACCTCCACATATCTCTACAATATTATGATATTGTCTACTTTGTGCATAAGCCCTCATGACTTTGCTTTTAGTTTCACCTCAAAAGGTTTGATACCAATAGAGATAGTTGTCCTTACTTATATACCCAAAATCATCTTCTATCTAGCCAATGTAGGACTTTGGTCTCATTCCCAACAATCTCCAATTTCCTACTGTAAAATGCGACAACCATTCTTAAAGGATGTTGTAGAGGTGTATTTGCTAATAGGTCTTGCTTCCCCGGTTATGGAAACCAACATCCAGTCTTTTTAATATTGAGAAGGAAAGAAAATGTTGGAGATGCGCAACCCATTGCCTAATATGGGGAATTATAGGTCATGGTCGAAAAAACCTATGTTTGTGGATTAGAGAATCTATGGGTTTTTGCATCACAATGTTGTGCATAAAGACTTGTCCTGATATTTGACAAACTGAATATCCATCTTTTGTGCAGGCAGCACAGTTGATGAGCAAGATGACTAATTCCGAGTGGAAAGAAACTGCAGTTGATAATGAATCAACTGCGATTGAACCCGAGATTCGACCTCCTAGGTCAGTATACAATGAACCTGTTTCTTATATGCCTCACACTAAGCTGTTTACTCACTCTGGACCTGTTTCTCCAGACTTGGACTTGGAGCCAAAGTAACACGCCATTTCAGAAATGGACCATCTAATGACCCACTTGATAGAAAACTATATGCCAAATTAGATGCTGGGAAAAAACAAGCTGCTAGAAAGATGTCGGAGGATACTCCCGTACTTAACAATAAAGATGATGACGACGACGACGATGATGAAGAGAGTAGAACTTCCATATTCGATAAGAAGCGAGCAGCTAAGCCAGTAATGCCTCCTATGCGGGGGAAGAAAAAACGAAGGTAACTACTTTTGTAGGTAGGGAATATTGATTATCGAACAGGTTGTCTTAACAGTAGAAAAATGGTGAACATCTTATGAGGGTCTCGAACCGAAGGTATATATAATTAGTTCATAAGTAAGTACCAAAGTAATCGAAAATATCGGGAAGGGATGATATCATCATCAATATTTTTGTAAAATACAACCTTGAATATTTTGTTAGACGTTGACATTTCCTAGTTACAGAGGTCGAATTTTTTTAATATCAAATTATGATGTTGCAACTTCCAAGTTTATAAAAAATAGTTATCCTACAATTTTGGTTTAAAAGGTATTTTGCCCA

mRNA sequence

CCTACTTTTCTCAATATTTTCAACTCAATTCTATTTTTGTCATTATTTATTAAAATAACATTATTGAATTGAAGGGTGAAATTACTATTCAAACGTGAGTTTTGATCCTCTATTACCCTTCTTTCTCCATCTCCCTCACATACTCGCCTGATCCCTAATCCTCCGCCGGCAGCAGCTCACCGGCGCTACTCTTCTCCGGCAAGTACGTACTTGTCGAACCAAATCCTGTGACGACGATAGACCGACCGGGAAGGTGGTCGACACCCACGAACACCTCTCAGCAACCCTCTCGCTCCCGGCGCGACATACCAGCGTATCGCAGTCTTGAAGTTGCAGTAGCAAGCGCAATGAGCAGCAACATGGACAGGCCGCAGAAATTTAGACCTCCCGAAATTATTAAGCTGAATGATGCAGCGAAATTGGCAGCACAGTTGATGAGCAAGATGACTAATTCCGAGTGGAAAGAAACTGCAGTTGATAATGAATCAACTGCGATTGAACCCGAGATTCGACCTCCTAGACTTGGACTTGGAGCCAAAGTAACACGCCATTTCAGAAATGGACCATCTAATGACCCACTTGATAGAAAACTATATGCCAAATTAGATGCTGGGAAAAAACAAGCTGCTAGAAAGATGTCGGAGGATACTCCCGTACTTAACAATAAAGATGATGACGACGACGACGATGATGAAGAGAGTAGAACTTCCATATTCGATAAGAAGCGAGCAGCTAAGCCAGTAATGCCTCCTATGCGGGGGAAGAAAAAACGAAGGTAACTACTTTTGTAGGTAGGGAATATTGATTATCGAACAGGTTGTCTTAACAGTAGAAAAATGGTGAACATCTTATGAGGGTCTCGAACCGAAGGTATATATAATTAGTTCATAAGTAAGTACCAAAGTAATCGAAAATATCGGGAAGGGATGATATCATCATCAATATTTTTGTAAAATACAACCTTGAATATTTTGTTAGACGTTGACATTTCCTAGTTACAGAGGTCGAATTTTTTTAATATCAAATTATGATGTTGCAACTTCCAAGTTTATAAAAAATAGTTATCCTACAATTTTGGTTTAAAAGGTATTTTGCCCA

Coding sequence (CDS)

ATGAGCAGCAACATGGACAGGCCGCAGAAATTTAGACCTCCCGAAATTATTAAGCTGAATGATGCAGCGAAATTGGCAGCACAGTTGATGAGCAAGATGACTAATTCCGAGTGGAAAGAAACTGCAGTTGATAATGAATCAACTGCGATTGAACCCGAGATTCGACCTCCTAGACTTGGACTTGGAGCCAAAGTAACACGCCATTTCAGAAATGGACCATCTAATGACCCACTTGATAGAAAACTATATGCCAAATTAGATGCTGGGAAAAAACAAGCTGCTAGAAAGATGTCGGAGGATACTCCCGTACTTAACAATAAAGATGATGACGACGACGACGATGATGAAGAGAGTAGAACTTCCATATTCGATAAGAAGCGAGCAGCTAAGCCAGTAATGCCTCCTATGCGGGGGAAGAAAAAACGAAGGTAA

Protein sequence

MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRTSIFDKKRAAKPVMPPMRGKKKRR

Homology

[Close]

BLAST of Lsi03G003350 vs. ExPASy TrEMBL
Match: A0A5D3BV19 (Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001090 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.3e-62
Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 3   SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLG 62
           SNM+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLG
Sbjct: 37  SNMERPQKSRPPEIIKLNDAAKLAAQLMSKMTNSEWKETGVDNESTAIEPEMRPPRLGLG 96

Query: 63  AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRTSI 122
           AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL+NKDDD DD++EESRT+I
Sbjct: 97  AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEESRTAI 156

Query: 123 FDKKRAAKPV-MPPMRGKKKRR 144
           F+KKRAAKPV MPP +GKKKRR
Sbjct: 157 FNKKRAAKPVTMPPFQGKKKRR 178

[Close]

BLAST of Lsi03G003350 vs. ExPASy TrEMBL
Match: A0A1S3C7D1 (uncharacterized protein LOC103497715 OS=Cucumis melo OX=3656 GN=LOC103497715 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 126/140 (90.00%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 5   MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAK 64
           M+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAK
Sbjct: 1   MERPQKSRPPEIIKLNDAAKLAAQLMSKMTNSEWKETGVDNESTAIEPEMRPPRLGLGAK 60

Query: 65  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRTSIFD 124
           VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL+NKDDD DD++EESRT+IF+
Sbjct: 61  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEESRTAIFN 120

Query: 125 KKRAAKPV-MPPMRGKKKRR 144
           KKRAAKPV MPP +GKKKRR
Sbjct: 121 KKRAAKPVTMPPFQGKKKRR 140

[Close]

BLAST of Lsi03G003350 vs. ExPASy TrEMBL
Match: A0A0A0K9Y5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004500 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.2e-60
Identity = 125/142 (88.03%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 5   MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAK 64
           M+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLGLGAK
Sbjct: 1   MERPQKSRPPELIKLNDAAKLAAQLMSKMTNSEWKETGVDSESTAIEPEMRPPRLGLGAK 60

Query: 65  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDD--EESRTSI 124
           VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP+LN KDD+DDDDD  EESRT+I
Sbjct: 61  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPILNTKDDNDDDDDEEEESRTAI 120

Query: 125 FDKKRAAKPV-MPPMRGKKKRR 144
           F KKRA KPV MPP++GKKKRR
Sbjct: 121 FSKKRAPKPVTMPPLQGKKKRR 142

[Close]

BLAST of Lsi03G003350 vs. ExPASy TrEMBL
Match: A0A6J1HHS0 (uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC111464189 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.9e-55
Identity = 115/144 (79.86%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLG 60
           MSSNM+RPQK RPPEIIKLNDAAKLAA+LMSKMTN EWKETA DN+ST +EPE RPPRLG
Sbjct: 1   MSSNMERPQKSRPPEIIKLNDAAKLAAELMSKMTNCEWKETANDNKSTVVEPENRPPRLG 60

Query: 61  LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRT 120
           LGAK++  FRNGPSNDPLDRKLYAKLDAGKKQAARKM EDTPV+NN+DDDD+DD+EES T
Sbjct: 61  LGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTPVVNNEDDDDNDDEEESET 120

Query: 121 SIFDKKRA-AKPVMPPMRGKKKRR 144
           ++FDKKRA  +  MPP+  KKKRR
Sbjct: 121 AMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of Lsi03G003350 vs. ExPASy TrEMBL
Match: A0A6J1KYE5 (uncharacterized protein LOC111499331 OS=Cucurbita maxima OX=3661 GN=LOC111499331 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 117/144 (81.25%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLG 60
           MSSN++RPQK RPPEIIKLNDAAKLAAQLMSKMT +EWKETA DNEST  EP  RPPRLG
Sbjct: 1   MSSNVERPQKSRPPEIIKLNDAAKLAAQLMSKMTKTEWKETANDNESTMFEPGKRPPRLG 60

Query: 61  LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRT 120
           LGAK+T + RNGPSNDPLDRKLYAKLDA KKQAARK+SEDTPVL+N++DDDDDDD+ESRT
Sbjct: 61  LGAKITHNIRNGPSNDPLDRKLYAKLDAVKKQAARKVSEDTPVLDNEEDDDDDDDKESRT 120

Query: 121 SIFDKKRAAKPV-MPPMRGKKKRR 144
           +IFDKKRAA  V M P+R KKKRR
Sbjct: 121 AIFDKKRAATRVSMTPLRAKKKRR 144

[Close]

BLAST of Lsi03G003350 vs. NCBI nr
Match: TYK03014.1 (putative RNA binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 4.7e-62
Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 3   SNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLG 62
           SNM+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLG
Sbjct: 37  SNMERPQKSRPPEIIKLNDAAKLAAQLMSKMTNSEWKETGVDNESTAIEPEMRPPRLGLG 96

Query: 63  AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRTSI 122
           AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL+NKDDD DD++EESRT+I
Sbjct: 97  AKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEESRTAI 156

Query: 123 FDKKRAAKPV-MPPMRGKKKRR 144
           F+KKRAAKPV MPP +GKKKRR
Sbjct: 157 FNKKRAAKPVTMPPFQGKKKRR 178

[Close]

BLAST of Lsi03G003350 vs. NCBI nr
Match: XP_031743839.1 (uncharacterized protein LOC101222227 isoform X1 [Cucumis sativus] >KGN45659.2 hypothetical protein Csa_005356 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-61
Identity = 128/146 (87.67%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLG 60
           +SSNM+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLG
Sbjct: 31  LSSNMERPQKSRPPELIKLNDAAKLAAQLMSKMTNSEWKETGVDSESTAIEPEMRPPRLG 90

Query: 61  LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDD--EES 120
           LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP+LN KDD+DDDDD  EES
Sbjct: 91  LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPILNTKDDNDDDDDEEEES 150

Query: 121 RTSIFDKKRAAKPV-MPPMRGKKKRR 144
           RT+IF KKRA KPV MPP++GKKKRR
Sbjct: 151 RTAIFSKKRAPKPVTMPPLQGKKKRR 176

[Close]

BLAST of Lsi03G003350 vs. NCBI nr
Match: XP_008458228.1 (PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-61
Identity = 126/140 (90.00%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 5   MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAK 64
           M+RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKET VDNESTAIEPE+RPPRLGLGAK
Sbjct: 1   MERPQKSRPPEIIKLNDAAKLAAQLMSKMTNSEWKETGVDNESTAIEPEMRPPRLGLGAK 60

Query: 65  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDEESRTSIFD 124
           VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSE+TPVL+NKDDD DD++EESRT+IF+
Sbjct: 61  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEESRTAIFN 120

Query: 125 KKRAAKPV-MPPMRGKKKRR 144
           KKRAAKPV MPP +GKKKRR
Sbjct: 121 KKRAAKPVTMPPFQGKKKRR 140

[Close]

BLAST of Lsi03G003350 vs. NCBI nr
Match: XP_004138501.1 (uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus] >XP_031743840.1 uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus] >XP_031743841.1 uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus] >XP_031743843.1 uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 125/142 (88.03%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 5   MDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAK 64
           M+RPQK RPPE+IKLNDAAKLAAQLMSKMTNSEWKET VD+ESTAIEPE+RPPRLGLGAK
Sbjct: 1   MERPQKSRPPELIKLNDAAKLAAQLMSKMTNSEWKETGVDSESTAIEPEMRPPRLGLGAK 60

Query: 65  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDD--EESRTSI 124
           VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTP+LN KDD+DDDDD  EESRT+I
Sbjct: 61  VTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPILNTKDDNDDDDDEEEESRTAI 120

Query: 125 FDKKRAAKPV-MPPMRGKKKRR 144
           F KKRA KPV MPP++GKKKRR
Sbjct: 121 FSKKRAPKPVTMPPLQGKKKRR 142

[Close]

BLAST of Lsi03G003350 vs. NCBI nr
Match: XP_038906622.1 (uncharacterized protein LOC120092570 isoform X1 [Benincasa hispida] >XP_038906623.1 uncharacterized protein LOC120092570 isoform X1 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 7.1e-58
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MSSNMDRPQKFRPPEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLG 60
           MSS M RPQK RPPEIIKLNDAAKLAAQLMSKMTNSEWKE+ VDNESTAIEPEIRPPRLG
Sbjct: 1   MSSKMKRPQKSRPPEIIKLNDAAKLAAQLMSKMTNSEWKESTVDNESTAIEPEIRPPRLG 60

Query: 61  LGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDD--DDEES 120
           LGAKVTRHFRNGPSNDPLDRKL+AKL AGKKQA+ KMSEDTPVLNNKDDD DD  ++EES
Sbjct: 61  LGAKVTRHFRNGPSNDPLDRKLHAKLGAGKKQASTKMSEDTPVLNNKDDDGDDEEEEEES 120

Query: 121 RTSIFDKKRAAKPV-MPPMRGKKKRR 144
           RT++F+KKRAAKP+ M P++GKKKRR
Sbjct: 121 RTAMFNKKRAAKPITMSPLQGKKKRR 146

[Close]

BLAST of Lsi03G003350 vs. TAIR 10
Match: AT3G61370.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-13
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 14  PEIIKLNDAAKLAAQLMSKMTNSEWKETAVDNESTAIEPEIRPPRLGLGAKVTRHFRNGP 73
           P+I K + A KLA + ++ MT    + T  D   TA   E RP RLGLGA+V+R  +  P
Sbjct: 12  PQIFKTDKAQKLAEKWVASMT----RPTEDDPIETA--QEERPHRLGLGAQVSRQTKRRP 71

Query: 74  SNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDE-ESRTSIFDKKR 128
           S+DPLD+KL AK  A K++ AR ++E      N  DD +DDDE ES++  F KK+
Sbjct: 72  SDDPLDQKLEAKFAAVKRKNARLVAEAAGSSKNAGDDSEDDDESESKSQAFGKKK 120

[Close]

BLAST of Lsi03G003350 vs. TAIR 10
Match: AT4G07940.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 58  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEDTPVLNNKDDDDDDDDE- 117
           +LGLGA+V+R  +  PS+DPLD+KL AK  AGK++ AR ++E      N  DD++D DE 
Sbjct: 62  KLGLGAQVSRQKKRRPSDDPLDQKLEAKFAAGKRKNARLVAESAGSSKNAGDDNEDGDES 121

Query: 118 ESRTSIFDKKR 128
           ES++  F  K+
Sbjct: 122 ESKSQAFGMKK 132

The following BLAST results are available for this feature:

BLAST of Lsi03G003350 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G003350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BV19	2.3e-62	90.14	Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C7D1	3.3e-61	90.00	uncharacterized protein LOC103497715 OS=Cucumis melo OX=3656 GN=LOC103497715 PE=...	[more]
A0A0A0K9Y5	8.2e-60	88.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G004500 PE=4 SV=1	[more]
A0A6J1HHS0	7.9e-55	79.86	uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC1114641...	[more]
A0A6J1KYE5	3.0e-54	81.25	uncharacterized protein LOC111499331 OS=Cucurbita maxima OX=3661 GN=LOC111499331...	[more]

BLAST of Lsi03G003350 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03014.1	4.7e-62	90.14	putative RNA binding protein [Cucumis melo var. makuwa]	[more]
XP_031743839.1	2.3e-61	87.67	uncharacterized protein LOC101222227 isoform X1 [Cucumis sativus] >KGN45659.2 hy...	[more]
XP_008458228.1	6.8e-61	90.00	PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo]	[more]
XP_004138501.1	1.7e-59	88.03	uncharacterized protein LOC101222227 isoform X2 [Cucumis sativus] >XP_031743840....	[more]
XP_038906622.1	7.1e-58	84.93	uncharacterized protein LOC120092570 isoform X1 [Benincasa hispida] >XP_03890662...	[more]

BLAST of Lsi03G003350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61370.1	4.3e-13	44.35	Protein of unknown function (DUF3245)	[more]
AT4G07940.1	1.9e-08	46.48	Protein of unknown function (DUF3245)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021641	Protein of unknown function DUF3245	PFAM	PF11595	DUF3245	coord: 16..142 e-value: 1.3E-13 score: 51.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..143
None	No IPR available	PANTHER	PTHR35741	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 5..143
None	No IPR available	PANTHER	PTHR35741:SF1	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 5..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003350.1	Lsi03G003350.1	mRNA