Lsi03G002950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G002950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 3596143 .. 3599173 (+)
RNA-Seq ExpressionLsi03G002950
SyntenyLsi03G002950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGTTGCATATCTTACTTGTTCAAATTCAAATCTTCAAATGTAAGAAGTTGTAACTATATTATTATATCTCATCTCTCAGTTTTCTGTAGATTCAATATCAATGCCAGTTGGCTCTGAATTGCAAGTTGAGGTTGCAGAGTTCTTGTGGAGGAACGTTCAGGTATGATCCCAAAGGCCAAATCTAGCTCACAAATATACAAATACATATATAGTCTTTATATTACTTCTGCATTAAAATTTCTTTTGTTTGAGAATTATTGTTTTGGTTCTGAGCGTGTTCATCTTGTCAGGTGTGAAAAATAATGTACATTAGGATTTTCCTGTTTTGGGTAATCACGTATTTGAAGTTCCAGATGGCAACAAATTGAAATTTGCACCAATTTCAATTTTGGGGAAATGCTTTCGCCTCATTTGATTTTGATAACTATATGGTTTTTTAAAATTGAACATATTTCCTTTTAATTTCTTACGATGGTTTTCATCTTTTTTAAATAAAAGAGTTGAACCCAAATTCTATAAACAAAAATAAGTTTTTAAAACTTAGTTTGGTTTTTGAATTGGTAGAAAGTAGATAATAAAACAAGAAGTTTAGAGGTGGAATGGATGTTTGTTGGCTTAATTTTAAAAAACGAAATGGTTACTAATGTAGCATTATTTATTCAGATTTTGAACCTCAATTAGATCCCACTGAGCTTGAAGACAAATAGGCAGAAACATGAGTAAAAAGTAGGACTAACAAAATTTTCTCAGGATCTTCTAAAGGTAACTTTGCATTCTGAGCAAAATCCCAAAAAAGAAAAAAAATTGAAAAAGTGTAAGAAAAAAAGAAGATGTACTGTTGAGTTCAATCTTTCAATCAACAAACCTAAAAACCTGTAAATTCATCTTTAGAGTTTGCACAAATATATACTTGTGTAAGATTATTTCTACATTCTGCTAATCAACATGGCTGTGATTGACAGCAGCATCTATTAAGCAATCTAAGCAATGCATCAGCTTTTCTTCTGGCCTTCAATGATCCATCTGCTGCCAAGCTTTGAAGAGAAGGGATACTTCTAGGATTTATCAACAACCGCCTTGCTACTTCCTCTCCTCCATCCTTGCACAGCCCCAATAACAGTGTAATTGAACTCTCTTTTCCTTTTGGAGATCCAAATCTTAAAAGATCAATGAGCAAAGACACTAAAACTCTACTCTTTCTTATCTCCTGCAGCCCTTCTGAGCAACCCAAAACCAGGGAGAGCGCCTGCAAGGCGTCATCTGTTATGCCTGCCTTGTCATCTGTCAACAAGTCAATCAGCAATGGCACTGCCCCAGCTACTACAATACAAGCTTTGTTGGCACTGTAAAGTGCTAGATTGCAAAGTGCAGTGGCAGCATCTCGTTTCCCAGCTGAATGGCCTTCTTTAAGGAGCCTCACCAATGCTGGTATGGCTTTCGGACTTGCTCCTATTGTTATTTTGAACTCATCCACCATGGTTAGGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTCCCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCCACTATGAGGATCTTGTTGTTGTTGAAGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAAAAACGGTATTGCTCCTGCTTCGGCAATCATCCTTCGGTTATCCATTCCTGTTTTCGCTAGTAACCGGAGTTCATATGCAGCTTGTCTTTGAATATCTGGTGACCCAGTTGCAAGCTTTCCCACCAGAAACTCGGCTGTCATTTTGACAGCGTCGGAGGCTGCTTTGGATGCAGAAATGTGATCGACCGGTTCCTCGGAATGGTATCTATTGCTGTTGCTTCTCTCCAACTCAGAGGAAGAATATGGTTTAGTAGATTCATTCATACTTATGTTGTTTTCTTGACACCACTGTTGCATCAAACTTTTGAGTGCATAATTTGGTATAAGGGCCATATGAATTAGCCTCTGATTACTCTTGGGACATACATGATGTCCTGAGTCAATCCATTGGGCTATTGAATAACGATCGTAAGTATGCCCGGACGATATAATTACAGGGTCTCTCATGAAATCTAGTGAAATGGGGCAGCGAAAATCGTCTGGAATTGGAACCAATGAATTAGAAGAAGAAGAAGAATGATCTAAATGTTTGTTTGAGAGTAGAAACTTTAAGTTGAATTTTTCCCCATCATTCTCATTTTCTTTCTTACTGAAGATCGCTGTTTTGGCATGCTTAACAAGAGAGATGAGATTGTTTATGTTAGAAACTACAATTATTCCACCTGTTCCAGCTTGTTTAAGAGCTTCTGCCTCTAGTTTTGATATTTCTTCATCACAATCCATCATGCTTCTCAGCCCAACACTGCTGAAAATCTCTTTGACTTTTCCCACTTCTGCCAAACCTATGTTCTTGTAGTTTCTCTCCTTATTGTTGCTCATTAGTTGAAGAACCTCATCTCTTCTTTGAAGCTCTCGAGCATTGGCTGAAAACTTGAATCGCTTAGCTTGACTGTGAAGAAGCTCCACTTGTTCTCTTGTATCATCTGTTAATTTAAGCAAGCTGAGAGGTAAAATGTCAAGTACCCTCCCAATCTCCTTCACTAGCTGATAAAACTGATTGGAAATGGACTCAGTCTGTAGTAAACTCCATAGACAGCTTCCTTCCTCACAGCTTTGAGTCAGAATCTTAACTCTTCTGATTACAGAAAAGAGTTCAGTGAGACAAAGAATGGAAGATGGAGGAAGAGGACAATTTGATTCTTGAACCTCTTCAAATAAGAAAGCAAGAAGCTTGATTCTTCTTCGCATGGTTGAGATAGTCTTAGCCTGCACAAAAGGAGCCTTCTCTTCAAAAGCAACTTCATTGGATAGGAGAATCAGTGGTTGCAGCAGAGACCCAGAAGGCAAAAAGCCTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCATTCTCACTCCATGA

mRNA sequence

ATGGGCATTCAATATCAATGCCAGTTGGCTCTGAATTGCAAGTTGAGGTTGCAGAGTTCTTGTGGAGGAACGTTCAGCCCTTCTGAGCAACCCAAAACCAGGGAGAGCGCCTGCAAGGCGTCATCTGTTATGCCTGCCTTGTCATCTGTCAACAAGTCAATCAGCAATGGCACTGCCCCAGCTACTACAATACAAGCTTTGTTGGCACTATTGCAAAGTGCAGTGGCAGCATCTCGTTTCCCAGCTGAATGGCCTTCTTTAAGGAGCCTCACCAATGCTGGTATGGCTTTCGGACTTGCTCCTATTGTTATTTTGAACTCATCCACCATGGTTAGGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTCCCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCCACTATGAGGATCTTGTTGTTGTTGAAGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAAAAACGGTATTGCTCCTGCTTCGGCAATCATCCTTCGTTGCAAGCTTTCCCACCAGAAACTCGGCTGTCATTTTGACAGCGTCGGAGGCTGCTTTGGATGCAGAAATGTGATCGACCGGTTCCTCGGAATGAAAGCAAGAAGCTTGATTCTTCTTCGCATGGTTGAGATAGTCTTAGCCTGCACAAAAGGAGCCTTCTCTTCAAAAGCAACTTCATTGGATAGGAGAATCAGTGGTTGCAGCAGAGACCCAGAAGGCAAAAAGCCTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCATTCTCACTCCATGA

Coding sequence (CDS)

ATGGGCATTCAATATCAATGCCAGTTGGCTCTGAATTGCAAGTTGAGGTTGCAGAGTTCTTGTGGAGGAACGTTCAGCCCTTCTGAGCAACCCAAAACCAGGGAGAGCGCCTGCAAGGCGTCATCTGTTATGCCTGCCTTGTCATCTGTCAACAAGTCAATCAGCAATGGCACTGCCCCAGCTACTACAATACAAGCTTTGTTGGCACTATTGCAAAGTGCAGTGGCAGCATCTCGTTTCCCAGCTGAATGGCCTTCTTTAAGGAGCCTCACCAATGCTGGTATGGCTTTCGGACTTGCTCCTATTGTTATTTTGAACTCATCCACCATGGTTAGGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTCCCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCCACTATGAGGATCTTGTTGTTGTTGAAGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAAAAACGGTATTGCTCCTGCTTCGGCAATCATCCTTCGTTGCAAGCTTTCCCACCAGAAACTCGGCTGTCATTTTGACAGCGTCGGAGGCTGCTTTGGATGCAGAAATGTGATCGACCGGTTCCTCGGAATGAAAGCAAGAAGCTTGATTCTTCTTCGCATGGTTGAGATAGTCTTAGCCTGCACAAAAGGAGCCTTCTCTTCAAAAGCAACTTCATTGGATAGGAGAATCAGTGGTTGCAGCAGAGACCCAGAAGGCAAAAAGCCTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCATTCTCACTCCATGA

Protein sequence

MGIQYQCQLALNCKLRLQSSCGGTFSPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLALLQSAVAASRFPAEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVMLSIAPAATMRILLLLKIARLNNAVTAFSSILGSPDFNNVTKNGIAPASAIILRCKLSHQKLGCHFDSVGGCFGCRNVIDRFLGMKARSLILLRMVEIVLACTKGAFSSKATSLDRRISGCSRDPEGKKPEEAAIIGERATSMAILTP
Homology
[Close]
BLAST of Lsi03G002950 vs. ExPASy TrEMBL
Match: A0A2P5ELY7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_176120 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-28
Identity = 92/147 (62.59%), Postives = 107/147 (72.79%), Query Frame = 0 

Query: 26  SPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLAL----LQSAVAASRFP 85
           SPSEQP++      ASSVM ALSS+N S S GTAPATT  +L AL    L+ AVAAS  P
Sbjct: 13  SPSEQPRSSARTANASSVMAALSSINSSTSRGTAPATTTASLFALYTARLKIAVAASFLP 72

Query: 86  AEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVMLSIAPA 145
           A  PSLRS T+AG+A G API  L SS M RL I AAAFSLAS+V PDS+  + LS+APA
Sbjct: 73  AGVPSLRSPTSAGIALGRAPIATLQSSIMDRLKIAAAAFSLASMVPPDSRTPMTLSMAPA 132

Query: 146 ATMRILLLLKIARLNNAVTAFSSILGS 169
           A +R LLLLK+ RL++AVTAFS ILGS
Sbjct: 133 AMIRTLLLLKMERLSSAVTAFSWILGS 159

[Close]
BLAST of Lsi03G002950 vs. ExPASy TrEMBL
Match: A0A2P5E0E6 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_015110 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.7e-27
Identity = 89/147 (60.54%), Postives = 104/147 (70.75%), Query Frame = 0 

Query: 26  SPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLAL----LQSAVAASRFP 85
           SPSEQP++      ASSVM ALSS+N S   GTAPATT  +L AL    L+ AVAAS  P
Sbjct: 13  SPSEQPRSSARTANASSVMAALSSINSSTRRGTAPATTTASLFALYTARLKIAVAASFLP 72

Query: 86  AEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVMLSIAPA 145
           A  PS RS T+AG+A G API  L SS M RL I AAAF LAS+V PDS+  + LS+APA
Sbjct: 73  AGVPSFRSPTSAGIALGRAPIATLQSSIMDRLNIAAAAFFLASMVLPDSRTPMTLSMAPA 132

Query: 146 ATMRILLLLKIARLNNAVTAFSSILGS 169
           A +R LLLLK+ RL++AVTAFS ILGS
Sbjct: 133 AMIRSLLLLKMERLSSAVTAFSWILGS 159

[Close]
BLAST of Lsi03G002950 vs. ExPASy TrEMBL
Match: A0A0A9CHU2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-09
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 0 

Query: 60  PATTIQALL----ALLQSAVAASRFPAEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYI 119
           PA T + LL      L+ AVAAS  P   PS R + + G+A  L PIV L SST  +L  
Sbjct: 4   PAFTARILLPWYMQRLKIAVAASFLPLGLPSHRRVMSGGIAPAL-PIVTLFSSTTDKLNS 63

Query: 120 VAAAFSLASIVFPDSKMCVMLSIAPAATMRILLLLKIARLNNAVTAFSSILGSPDFNNVT 179
           VAAAFSLAS++ P      +L IA   TM  LL   + RL +AVTA S +LGS D + +T
Sbjct: 64  VAAAFSLASML-PILSTSTILGIACEPTMLALLFSWMERLRSAVTACSCVLGSEDESRLT 123

Query: 180 KNGIAPASAIILR 189
             G+APASA+ +R
Sbjct: 124 SKGMAPASAMHIR 134

[Close]
BLAST of Lsi03G002950 vs. ExPASy TrEMBL
Match: A0A7C9EM36 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-04
Identity = 68/174 (39.08%), Postives = 82/174 (47.13%), Query Frame = 0 

Query: 20  SCGGTFSPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLAL----LQSAV 79
           SC     P   P    S   A S M    S   +    TAPA T  +L +L    L S V
Sbjct: 46  SCTMATLPISIPARLLSTTMAFSAMAC--SATSATRGPTAPALTALSLFSLAEHSLYSVV 105

Query: 80  AASRFPAEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVM 139
            AS FP   P +RS T+ GMA   AP+V L SS+M RL   AAAF    +  P     + 
Sbjct: 106 RASFFPRAPPLIRSATSGGMA-PQAPMVNLVSSSMARLIRAAAAFCF-EVSVPVFSTYIK 165

Query: 140 LSIAP-AATMRILLLLKIARLNNAVTAFSSILGSPDFNNVTKNGIAPASAIILR 189
             IAP A+ + ILL     RL  AVTA S + GS      T+ G+AP SAI  R
Sbjct: 166 DLIAPEASAISILLSGWRDRLRTAVTACSWVQGSMHLRRGTRAGMAPDSAIRTR 215

[Close]
BLAST of Lsi03G002950 vs. NCBI nr
Match: PON86564.1 (hypothetical protein TorRG33x02_176120 [Trema orientale])

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-28
Identity = 92/147 (62.59%), Postives = 107/147 (72.79%), Query Frame = 0 

Query: 26  SPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLAL----LQSAVAASRFP 85
           SPSEQP++      ASSVM ALSS+N S S GTAPATT  +L AL    L+ AVAAS  P
Sbjct: 13  SPSEQPRSSARTANASSVMAALSSINSSTSRGTAPATTTASLFALYTARLKIAVAASFLP 72

Query: 86  AEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVMLSIAPA 145
           A  PSLRS T+AG+A G API  L SS M RL I AAAFSLAS+V PDS+  + LS+APA
Sbjct: 73  AGVPSLRSPTSAGIALGRAPIATLQSSIMDRLKIAAAAFSLASMVPPDSRTPMTLSMAPA 132

Query: 146 ATMRILLLLKIARLNNAVTAFSSILGS 169
           A +R LLLLK+ RL++AVTAFS ILGS
Sbjct: 133 AMIRTLLLLKMERLSSAVTAFSWILGS 159

[Close]
BLAST of Lsi03G002950 vs. NCBI nr
Match: PON79010.1 (hypothetical protein PanWU01x14_015110 [Parasponia andersonii])

HSP 1 Score: 131.7 bits (330), Expect = 9.7e-27
Identity = 89/147 (60.54%), Postives = 104/147 (70.75%), Query Frame = 0 

Query: 26  SPSEQPKTRESACKASSVMPALSSVNKSISNGTAPATTIQALLAL----LQSAVAASRFP 85
           SPSEQP++      ASSVM ALSS+N S   GTAPATT  +L AL    L+ AVAAS  P
Sbjct: 13  SPSEQPRSSARTANASSVMAALSSINSSTRRGTAPATTTASLFALYTARLKIAVAASFLP 72

Query: 86  AEWPSLRSLTNAGMAFGLAPIVILNSSTMVRLYIVAAAFSLASIVFPDSKMCVMLSIAPA 145
           A  PS RS T+AG+A G API  L SS M RL I AAAF LAS+V PDS+  + LS+APA
Sbjct: 73  AGVPSFRSPTSAGIALGRAPIATLQSSIMDRLNIAAAAFFLASMVLPDSRTPMTLSMAPA 132

Query: 146 ATMRILLLLKIARLNNAVTAFSSILGS 169
           A +R LLLLK+ RL++AVTAFS ILGS
Sbjct: 133 AMIRSLLLLKMERLSSAVTAFSWILGS 159

[Close]
BLAST of Lsi03G002950 vs. NCBI nr
Match: KAG7016021.1 (hypothetical protein SDJN02_21125 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-19
Identity = 68/131 (51.91%), Postives = 72/131 (54.96%), Query Frame = 0 

Query: 152 IARLNNAVTAFSSILGSPDFNNVTKNGIAPASAIILRCKLSHQKLGCHFDSVGGCFGCRN 211
           IARLNNAVTAFSSILGSPDFN+VT+N                                  
Sbjct: 43  IARLNNAVTAFSSILGSPDFNSVTRN---------------------------------- 102

Query: 212 VIDRFLGMKARSLILLRMVEIVLACTKGAFSSKATSLDRRISGCSRDPEGKKPEEAAIIG 271
                                VLACTKG FSSKATSLDRRI+ CSRDPEGK+ EEAAIIG
Sbjct: 103 ---------------------VLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIG 118

Query: 272 ERATSMAILTP 283
           ERATSMA LTP
Sbjct: 163 ERATSMAGLTP 118

[Close]
BLAST of Lsi03G002950 vs. NCBI nr
Match: KAG6578457.1 (LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-13
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 229 MVEIVLACTKGAFSSKATSLDRRISGCSRDPEGKKPEEAAIIGERATSMA 279
           MVEIVLACTKG FSSKATSLDRRI+ CSRDPEGK+ EEAAIIGERATSMA
Sbjct: 1   MVEIVLACTKGEFSSKATSLDRRINDCSRDPEGKRLEEAAIIGERATSMA 50

The following BLAST results are available for this feature:
BLAST of Lsi03G002950 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G002950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5ELY71.9e-2862.59Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_176120 PE=4 SV... [more]
A0A2P5E0E64.7e-2760.54Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_015110 PE... [more]
A0A0A9CHU29.9e-0946.62Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7C9EM367.3e-0439.08Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of Lsi03G002950 vs. NCBI nr
Match NameE-valueIdentityDescription
PON86564.14.0e-2862.59hypothetical protein TorRG33x02_176120 [Trema orientale][more]
PON79010.19.7e-2760.54hypothetical protein PanWU01x14_015110 [Parasponia andersonii][more]
KAG7016021.14.4e-1951.91hypothetical protein SDJN02_21125 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6578457.11.6e-1390.00LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of Lsi03G002950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G002950.1Lsi03G002950.1mRNA