Lsi02G013250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Copper transporter
Location	chr02: 17717195 .. 17717671 (+)
RNA-Seq Expression	Lsi02G013250
Synteny	Lsi02G013250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATGAACTCCCCGCCGCCACCGATGGGTCCGTCCAGCGGCGACTCCGGCGACGACATGAACTCCCACGAAATGATGTCGACGGCGATGCACATGACTTTCTTCTGGGGAAAAAACACCCAAGTTTTATTCTCCGGCTGGCCGGGTGACCGGTCCGGCATGTATGCGGTGGCGCTGGTCTTCGTCTTTTTGCTGGCGGTGACCGTCGAGTGGCTGTCGTACTGGCGGGTGATGACGGAGGCGGGGCCGAGAAATGTCGCTGCCGGGATCGTGCAGACGGCGGTGCATGGGATTAGAATGGGAATTGCGTACATGGTGATGCTTGCTTTGATGTCGTTCAACGGCGGCGTTTTTATCGTCGCCGTTGCCGGCCATTCAGTTGGGTTTTTGGTTTTTGGGAGCAGAGTTTTGAAGAAGGCGAAATCGTCGCCGTACGATGAGGGTCCTGCCGATCTTCCATCTAGGGTTTGCTGA

mRNA sequence

ATGCATATGAACTCCCCGCCGCCACCGATGGGTCCGTCCAGCGGCGACTCCGGCGACGACATGAACTCCCACGAAATGATGTCGACGGCGATGCACATGACTTTCTTCTGGGGAAAAAACACCCAAGTTTTATTCTCCGGCTGGCCGGGTGACCGGTCCGGCATGTATGCGGTGGCGCTGGTCTTCGTCTTTTTGCTGGCGGTGACCGTCGAGTGGCTGTCGTACTGGCGGGTGATGACGGAGGCGGGGCCGAGAAATGTCGCTGCCGGGATCGTGCAGACGGCGGTGCATGGGATTAGAATGGGAATTGCGTACATGGTGATGCTTGCTTTGATGTCGTTCAACGGCGGCGTTTTTATCGTCGCCGTTGCCGGCCATTCAGTTGGGTTTTTGGTTTTTGGGAGCAGAGTTTTGAAGAAGGCGAAATCGTCGCCGTACGATGAGGGTCCTGCCGATCTTCCATCTAGGGTTTGCTGA

Coding sequence (CDS)

ATGCATATGAACTCCCCGCCGCCACCGATGGGTCCGTCCAGCGGCGACTCCGGCGACGACATGAACTCCCACGAAATGATGTCGACGGCGATGCACATGACTTTCTTCTGGGGAAAAAACACCCAAGTTTTATTCTCCGGCTGGCCGGGTGACCGGTCCGGCATGTATGCGGTGGCGCTGGTCTTCGTCTTTTTGCTGGCGGTGACCGTCGAGTGGCTGTCGTACTGGCGGGTGATGACGGAGGCGGGGCCGAGAAATGTCGCTGCCGGGATCGTGCAGACGGCGGTGCATGGGATTAGAATGGGAATTGCGTACATGGTGATGCTTGCTTTGATGTCGTTCAACGGCGGCGTTTTTATCGTCGCCGTTGCCGGCCATTCAGTTGGGTTTTTGGTTTTTGGGAGCAGAGTTTTGAAGAAGGCGAAATCGTCGCCGTACGATGAGGGTCCTGCCGATCTTCCATCTAGGGTTTGCTGA

Protein sequence

MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC

Homology

[Close]

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 85/159 (53.46%), Postives = 109/159 (68.55%), Query Frame = 0


Query: 2   HMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALV 61
           HM+  PPP  PSS    +    H MM   MHMTFFWGKNT+VLFSGWPG  SGMYA+ L+
Sbjct: 5   HMHDMPPP-SPSSSSMSNHTTPHMMM---MHMTFFWGKNTEVLFSGWPGTSSGMYALCLI 64

Query: 62  FVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIV 121
            +FLLAV  EWL++  ++  +G  N AAG+ QTAV+ ++ G++Y+VMLA+MSFN GVFIV
Sbjct: 65  VIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIV 124

Query: 122 AVAGHSVGFLVFGSRVLKKAKSSPYDEGPADL--PSRVC 159
           A+AG+ VGF +FGS   KK      D+  A+L  PS  C
Sbjct: 125 AIAGYGVGFFLFGSTTFKKPSD---DQKTAELLPPSSGC 156

[Close]

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 78/148 (52.70%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 2   HMNSPPPPMGPSSGDSGDDMNS--------HEMMSTAMHMTFFWGKNTQVLFSGWPGDRS 61
           HM+  P P   SS      MN+        H  M   MHMTFFWGKNT+VLFSGWPG  S
Sbjct: 5   HMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSS 64

Query: 62  GMYAVALVFVFLLAVTVEWLSYWRVM--TEAGPRNVAAGIVQTAVHGIRMGIAYMVMLAL 121
           GMYA+ L+FVF LAV  EWL++  ++  +     N AAG++QTAV+ +R+G+AY+VMLA+
Sbjct: 65  GMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAV 124

Query: 122 MSFNGGVFIVAVAGHSVGFLVFGSRVLK 140
           MSFN GVF+VA+AGH+VGF++FGS+  +
Sbjct: 125 MSFNAGVFLVALAGHAVGFMLFGSQTFR 152

[Close]

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34
Identity = 78/143 (54.55%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 8   PPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLA 67
           PP  PSS    +  NS+ +M   MHMTFFWGKNT++LFSGWPG   GMY + L+ VFLLA
Sbjct: 7   PPSSPSS--MVNHTNSNMIM---MHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLA 66

Query: 68  VTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVAGHS 127
           V VEWL++  ++   G  + A G+VQTAV+ ++ G+AY+VMLA+MSFNGGVFIVA+AG +
Sbjct: 67  VIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFA 126

Query: 128 VGFLVFGSRVLKKAKSSPYDEGP 151
           VGF++FGS   K       DE P
Sbjct: 127 VGFMLFGSTAFKNPSD---DEKP 141

[Close]

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot
Match: Q60EN8 (Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-29
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 31  MHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVTVEWLSY----WRVMTEAGPRN 90
           MHMTFFWGKNT+VLF+ WPG R GMYA+A++F+F LAV +E+  Y     R+     PR 
Sbjct: 23  MHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPR- 82

Query: 91  VAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVAGHSVGFLVFGSRVLKKAKSSPY 149
            AA  ++TAVH +R+G+AY++MLALMSFNGGVF+  VAGH+ GFL F + +     + P 
Sbjct: 83  -AAAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPL 142

[Close]

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot
Match: Q94EE4 (Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-27
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 3   MNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVF 62
           M    PP   ++   G  M + + M    HMTFFWGKN++VLF+ WPG R GMYA+AL+F
Sbjct: 8   MGGMSPPAAGAAAQGG--MGAMKSMRYT-HMTFFWGKNSEVLFTMWPGTRGGMYALALIF 67

Query: 63  VFLLAVTVEWLSYWR----VMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGV 122
           VF LAV VE+L   R    +   A     A G+ + AVH +R+G+AY++MLALMSFNGGV
Sbjct: 68  VFALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGGV 127

Query: 123 FIVAVAGHSVGFLVF 134
           F+VAVAGH+ GFL F
Sbjct: 128 FLVAVAGHAAGFLAF 139

[Close]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL
Match: A0A5D3BDI0 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001740 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.7e-72
Identity = 139/158 (87.97%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+SPPPPM P+S  SGDD+++H+MMS AMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 1   MHMDSPPPPMSPTSRGSGDDLHTHDMMSPAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WRVMTEAGPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 61  VFVFLLAVAVEWLSCWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 120

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G ADLPSRVC
Sbjct: 121 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGSADLPSRVC 158

[Close]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL
Match: A0A1S3C5H1 (Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497119 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.7e-72
Identity = 139/158 (87.97%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+SPPPPM P+S  SGDD+++H+MMS AMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 35  MHMDSPPPPMSPTSRGSGDDLHTHDMMSPAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 94

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WRVMTEAGPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 95  VFVFLLAVAVEWLSCWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 154

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G ADLPSRVC
Sbjct: 155 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGSADLPSRVC 192

[Close]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL
Match: A0A0A0LY50 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526820 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.5e-70
Identity = 135/158 (85.44%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+ PPPP+ P+S  SGDDM++H+MMS+AMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 36  MHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 95

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WR+MTE GPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 96  VFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 155

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G  DLPSRVC
Sbjct: 156 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 193

[Close]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL
Match: A0A6J1KI42 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493431 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 125/162 (77.16%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMS----TAMHMTFFWGKNTQVLFSGWPGDRSGMY 60
           MH + PPPPMGP SG S DDM+SH M S    T MHMTFFWGKNTQVLFSGWPG++SGMY
Sbjct: 34  MHSDPPPPPMGPMSGGSDDDMHSHGMPSSSGMTMMHMTFFWGKNTQVLFSGWPGNQSGMY 93

Query: 61  AVALVFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNG 120
           A+AL+ VFLLAV+VEWLS WR+MTE GPRN AAGIVQTAVHG+R+GIAYMVMLALMSFNG
Sbjct: 94  ALALILVFLLAVSVEWLSRWRLMTEMGPRNFAAGIVQTAVHGVRIGIAYMVMLALMSFNG 153

Query: 121 GVFIVAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           GVFI A+AGHS GFL+FGSRV K  KS PYD G ADLPS VC
Sbjct: 154 GVFIAAIAGHSFGFLIFGSRVTKNTKSKPYDPGTADLPSGVC 195

[Close]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL
Match: A0A6J1G9S4 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111452254 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 122/162 (75.31%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMS----TAMHMTFFWGKNTQVLFSGWPGDRSGMY 60
           MH + PPPPMGP SG S DDM+SH M S    T MHMTFFWGKNTQVLFSGWPG++SGMY
Sbjct: 34  MHSDPPPPPMGPMSGGSDDDMHSHGMPSSSGMTMMHMTFFWGKNTQVLFSGWPGNQSGMY 93

Query: 61  AVALVFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNG 120
           A+AL+ VFLLAV+VEWLS WR+MTE GPRN AAGIVQTAVHG+R+GIAY+VMLALMSFNG
Sbjct: 94  ALALILVFLLAVSVEWLSRWRLMTEMGPRNFAAGIVQTAVHGVRIGIAYLVMLALMSFNG 153

Query: 121 GVFIVAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           GVFI A+AGHS GFL+FGSRV+   KS PY +G ADLPS VC
Sbjct: 154 GVFIAAIAGHSFGFLIFGSRVMNNTKSKPYQQGTADLPSGVC 195

[Close]

BLAST of Lsi02G013250 vs. NCBI nr
Match: XP_008457428.1 (PREDICTED: copper transporter 2-like [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 5.6e-72
Identity = 139/158 (87.97%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+SPPPPM P+S  SGDD+++H+MMS AMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 35  MHMDSPPPPMSPTSRGSGDDLHTHDMMSPAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 94

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WRVMTEAGPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 95  VFVFLLAVAVEWLSCWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 154

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G ADLPSRVC
Sbjct: 155 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGSADLPSRVC 192

[Close]

BLAST of Lsi02G013250 vs. NCBI nr
Match: KAA0031769.1 (copper transporter 2-like [Cucumis melo var. makuwa] >TYJ97363.1 copper transporter 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 5.6e-72
Identity = 139/158 (87.97%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+SPPPPM P+S  SGDD+++H+MMS AMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL
Sbjct: 1   MHMDSPPPPMSPTSRGSGDDLHTHDMMSPAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WRVMTEAGPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 61  VFVFLLAVAVEWLSCWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 120

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G ADLPSRVC
Sbjct: 121 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGSADLPSRVC 158

[Close]

BLAST of Lsi02G013250 vs. NCBI nr
Match: XP_038895621.1 (copper transporter 6-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 8.0e-71
Identity = 136/148 (91.89%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+SPPPPMGP+SGDSGDDM+SHEMMS AMHM+FFWGKNTQVLFSGWPGDRSGMY +AL
Sbjct: 33  MHMDSPPPPMGPTSGDSGDDMHSHEMMSAAMHMSFFWGKNTQVLFSGWPGDRSGMYVIAL 92

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI
Sbjct: 93  VFVFLLAVVVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 152

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDE 149
           VA+AGHSVGFLVFGSRVLK AKSSP D+
Sbjct: 153 VAIAGHSVGFLVFGSRVLKTAKSSPDDQ 180

[Close]

BLAST of Lsi02G013250 vs. NCBI nr
Match: XP_004145276.3 (LOW QUALITY PROTEIN: copper transporter 6 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 130/158 (82.28%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVAL 60
           MHM+ PPPP+ P+S  SGDDM++H+MMS+AMHMTFFWGKNTQVLFSGW     GMYAVAL
Sbjct: 36  MHMDPPPPPIAPTSRGSGDDMHTHDMMSSAMHMTFFWGKNTQVLFSGWLAGSVGMYAVAL 95

Query: 61  VFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFI 120
           VFVFLLAV VEWLS WR+MTE GPRNVAAGIVQTAVHGIRMGIAY+VMLALMSFNGGVFI
Sbjct: 96  VFVFLLAVAVEWLSCWRMMTEVGPRNVAAGIVQTAVHGIRMGIAYLVMLALMSFNGGVFI 155

Query: 121 VAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           VAVAGH VGFLVFGSRV+KK KSS YD+G  DLPSRVC
Sbjct: 156 VAVAGHMVGFLVFGSRVVKKEKSSAYDQGTVDLPSRVC 193

[Close]

BLAST of Lsi02G013250 vs. NCBI nr
Match: XP_022998908.1 (copper transporter 6-like [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 125/162 (77.16%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MHMNSPPPPMGPSSGDSGDDMNSHEMMS----TAMHMTFFWGKNTQVLFSGWPGDRSGMY 60
           MH + PPPPMGP SG S DDM+SH M S    T MHMTFFWGKNTQVLFSGWPG++SGMY
Sbjct: 34  MHSDPPPPPMGPMSGGSDDDMHSHGMPSSSGMTMMHMTFFWGKNTQVLFSGWPGNQSGMY 93

Query: 61  AVALVFVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNG 120
           A+AL+ VFLLAV+VEWLS WR+MTE GPRN AAGIVQTAVHG+R+GIAYMVMLALMSFNG
Sbjct: 94  ALALILVFLLAVSVEWLSRWRLMTEMGPRNFAAGIVQTAVHGVRIGIAYMVMLALMSFNG 153

Query: 121 GVFIVAVAGHSVGFLVFGSRVLKKAKSSPYDEGPADLPSRVC 159
           GVFI A+AGHS GFL+FGSRV K  KS PYD G ADLPS VC
Sbjct: 154 GVFIAAIAGHSFGFLIFGSRVTKNTKSKPYDPGTADLPSGVC 195

[Close]

BLAST of Lsi02G013250 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 85/159 (53.46%), Postives = 109/159 (68.55%), Query Frame = 0


Query: 2   HMNSPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALV 61
           HM+  PPP  PSS    +    H MM   MHMTFFWGKNT+VLFSGWPG  SGMYA+ L+
Sbjct: 5   HMHDMPPP-SPSSSSMSNHTTPHMMM---MHMTFFWGKNTEVLFSGWPGTSSGMYALCLI 64

Query: 62  FVFLLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIV 121
            +FLLAV  EWL++  ++  +G  N AAG+ QTAV+ ++ G++Y+VMLA+MSFN GVFIV
Sbjct: 65  VIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIV 124

Query: 122 AVAGHSVGFLVFGSRVLKKAKSSPYDEGPADL--PSRVC 159
           A+AG+ VGF +FGS   KK      D+  A+L  PS  C
Sbjct: 125 AIAGYGVGFFLFGSTTFKKPSD---DQKTAELLPPSSGC 156

[Close]

BLAST of Lsi02G013250 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-37
Identity = 78/148 (52.70%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 2   HMNSPPPPMGPSSGDSGDDMNS--------HEMMSTAMHMTFFWGKNTQVLFSGWPGDRS 61
           HM+  P P   SS      MN+        H  M   MHMTFFWGKNT+VLFSGWPG  S
Sbjct: 5   HMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSS 64

Query: 62  GMYAVALVFVFLLAVTVEWLSYWRVM--TEAGPRNVAAGIVQTAVHGIRMGIAYMVMLAL 121
           GMYA+ L+FVF LAV  EWL++  ++  +     N AAG++QTAV+ +R+G+AY+VMLA+
Sbjct: 65  GMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAV 124

Query: 122 MSFNGGVFIVAVAGHSVGFLVFGSRVLK 140
           MSFN GVF+VA+AGH+VGF++FGS+  +
Sbjct: 125 MSFNAGVFLVALAGHAVGFMLFGSQTFR 152

[Close]

BLAST of Lsi02G013250 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-35
Identity = 78/143 (54.55%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 8   PPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLA 67
           PP  PSS    +  NS+ +M   MHMTFFWGKNT++LFSGWPG   GMY + L+ VFLLA
Sbjct: 7   PPSSPSS--MVNHTNSNMIM---MHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLA 66

Query: 68  VTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVAGHS 127
           V VEWL++  ++   G  + A G+VQTAV+ ++ G+AY+VMLA+MSFNGGVFIVA+AG +
Sbjct: 67  VIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFA 126

Query: 128 VGFLVFGSRVLKKAKSSPYDEGP 151
           VGF++FGS   K       DE P
Sbjct: 127 VGFMLFGSTAFKNPSD---DEKP 141

[Close]

BLAST of Lsi02G013250 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-27
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 5   SPPPPMGPSSGDSGDDMNSHEMMSTAMHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVF 64
           S P    PS        + H  M   MHMTFFWGK T+VLF GWPG    MY V L  +F
Sbjct: 7   SSPAAPAPSPSSFFQHRHRHGGM---MHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIF 66

Query: 65  LLAVTVEWLSYWRVMTEAGPRNVAAGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVA 124
           +++   E LS    M ++GP ++  G++QTAV+ +R  ++Y+VMLA+MSFNGGVF+ A+A
Sbjct: 67  VISAFSECLSRCGFM-KSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMA 126

Query: 125 GHSVGFLVFGSRVLKKAKSSPYDE 149
           G  +GF++FGSR  +   S+ + E
Sbjct: 127 GFGLGFMIFGSRAFRATSSNSHTE 146

[Close]

BLAST of Lsi02G013250 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-24
Identity = 53/111 (47.75%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 31  MHMTFFWGKNTQVLFSGWPGDRSGMYAVALVFVFLLAVTVEWLSYWRVMT--EAGPRNVA 90
           +H TF+WG N QVLFSGWPG   GMYA+AL+FVF LA   EWL+     +  + G   +A
Sbjct: 30  LHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLA 89

Query: 91  AGIVQTAVHGIRMGIAYMVMLALMSFNGGVFIVAVAGHSVGFLVFGSRVLK 140
               +TA++ ++ G +Y+V+LA++SFNGGVF+ A+ GH++GF VF  R  +
Sbjct: 90  KVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFR 140

The following BLAST results are available for this feature:

BLAST of Lsi02G013250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STG2	1.6e-37	53.46	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q39065	1.1e-35	52.70	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q8GWP3	8.2e-34	54.55	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q60EN8	7.9e-29	53.28	Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1	[more]
Q94EE4	3.3e-27	51.85	Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1	[more]

BLAST of Lsi02G013250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDI0	2.7e-72	87.97	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G0...	[more]
A0A1S3C5H1	2.7e-72	87.97	Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497119 PE=3 SV=1	[more]
A0A0A0LY50	1.5e-70	85.44	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526820 PE=3 SV=1	[more]
A0A6J1KI42	1.8e-63	77.16	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493431 PE=3 SV=1	[more]
A0A6J1G9S4	1.5e-62	75.31	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111452254 PE=3 SV=1	[more]

BLAST of Lsi02G013250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457428.1	5.6e-72	87.97	PREDICTED: copper transporter 2-like [Cucumis melo]	[more]
KAA0031769.1	5.6e-72	87.97	copper transporter 2-like [Cucumis melo var. makuwa] >TYJ97363.1 copper transpor...	[more]
XP_038895621.1	8.0e-71	91.89	copper transporter 6-like [Benincasa hispida]	[more]
XP_004145276.3	3.5e-66	82.28	LOW QUALITY PROTEIN: copper transporter 6 [Cucumis sativus]	[more]
XP_022998908.1	3.6e-63	77.16	copper transporter 6-like [Cucurbita maxima]	[more]

BLAST of Lsi02G013250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46900.1	1.1e-38	53.46	copper transporter 2	[more]
AT5G59030.1	8.1e-37	52.70	copper transporter 1	[more]
AT2G26975.1	5.8e-35	54.55	Ctr copper transporter family	[more]
AT5G59040.1	5.8e-27	44.44	copper transporter 3	[more]
AT2G37925.1	3.5e-24	47.75	copper transporter 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 33..80 e-value: 1.0E-8 score: 35.9 coord: 89..133 e-value: 4.7E-8 score: 33.7
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 13..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12483:SF100	SUBFAMILY NOT NAMED	coord: 13..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013250.1	Lsi02G013250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity